Chy12G208080 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G208080
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH12: 2481701 .. 2482157 (+)
RNA-Seq Expression	Chy12G208080
Synteny	Chy12G208080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAAGGATTTGAAAAGAATTGGTAAGGAAGGAAAGTAAGAACTTTGAAGGTGGGGGTAAAGTTGTAATAAAAATGATACTTCTAAAAGCCGCGTGGACGGCATTGGAGGGCCAGCCAAGGCCAAGCAGTTGAACGAGAAGACAGAGAGAACCAGCAGCCATTTTTCCGGTAATTTTCCCTCAAATTGACTCCATTTTCCCTTAATTTCCTTTTGCAAACCCCATTATACCGCCATTTCTTTTCCAATTTTTCATCTTTATTCTTCTCTTCTCCCTCTTCTTCCGATAGGAGATCTGTTGCTTCCACCCTTCTCCGATCTCAAATTCCCTTTTTGAACCGCTTCTCCTCTTCACAATCATCAAACTCCAATTCCCTTTTCCCAAATTCTCTTCTTGTCCCCGTTTCCTCCACCCCTTTTGGGATTTCATTCTTTTGCAGGCGTTTGTGCCTGA

mRNA sequence

ATGCTAAAAGGATTTGAAAAGAATTGGGCCAGCCAAGGCCAAGCAGTTGAACGAGAAGACAGAGAGAACCAGCAGCCATTTTTCCGGAGATCTGTTGCTTCCACCCTTCTCCGATCTCAAATTCCCTTTTTGAACCGCTTCTCCTCTTCACAATCATCAAACTCCAATTCCCTTTTCCCAAATTCTCTTCTTGTCCCCGTTTCCTCCACCCCTTTTGGGATTTCATTCTTTTGCAGGCGTTTGTGCCTGA

Coding sequence (CDS)

ATGCTAAAAGGATTTGAAAAGAATTGGGCCAGCCAAGGCCAAGCAGTTGAACGAGAAGACAGAGAGAACCAGCAGCCATTTTTCCGGAGATCTGTTGCTTCCACCCTTCTCCGATCTCAAATTCCCTTTTTGAACCGCTTCTCCTCTTCACAATCATCAAACTCCAATTCCCTTTTCCCAAATTCTCTTCTTGTCCCCGTTTCCTCCACCCCTTTTGGGATTTCATTCTTTTGCAGGCGTTTGTGCCTGA

Protein sequence

MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSLFPNSLLVPVSSTPFGISFFCRRLCLX

Homology

[Close]

BLAST of Chy12G208080 vs. ExPASy TrEMBL
Match: A0A0A0LVC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523080 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.8e-22
Identity = 62/77 (80.52%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 1  MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSLFP 60
          MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSL  
Sbjct: 1  MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSLSQ 60

Query: 61 NSLLVPVSSTPFGISFF 78
             L P      G   F
Sbjct: 61 ILFLSPFPPPLLGFHSF 77

[Close]

BLAST of Chy12G208080 vs. NCBI nr
Match: KGN65733.1 (hypothetical protein Csa_019726 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 7.43e-30
Identity = 60/66 (90.91%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSLFP 60
          MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSL  
Sbjct: 1  MLKGFEKNWASQGQAVEREDRENQQPFFRRSVASTLLRSQIPFLNRFSSSQSSNSNSLSQ 60

Query: 61 NSLLVP 66
             L P
Sbjct: 61 ILFLSP 66

The following BLAST results are available for this feature:

BLAST of Chy12G208080 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G208080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVC8	6.8e-22	80.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G523080 PE=4 SV=1	[more]

BLAST of Chy12G208080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65733.1	7.43e-30	90.91	hypothetical protein Csa_019726 [Cucumis sativus]	[more]

BLAST of Chy12G208080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G208080.1	Chy12G208080.1	mRNA