Chy12G207980 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207980
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	methyl-CpG-binding domain-containing protein 5
Location	chrH12: 2390586 .. 2392899 (+)
RNA-Seq Expression	Chy12G207980
Synteny	Chy12G207980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTTCTGGAACTTCATTTCCGGACTCCGATTGGCCCCGTCCTCATGATCCGATCCGACCCGACTTACCTTTCTCCCATCACCTCCCTCCTGACCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCTACCTCCTCCCCCACTCCCGCCACCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCTCTAACTTCTTCCACTCGCCGATCTCCATTACGCCCCGACCCTCTCAACTCTTTCAACGGAGATTCTTCCCCTTCCAAGAAAGTCTCCGCTTCTAACTCTGCCTCTTCGAAATCTGCCTTGTCTGAGCGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACCGCTGGAACCGTCGATAAGGTGAATTGATTTCTTATCTCTTATCGGTTTGTAATTTCTTTTTTCTTTGTAGTGGAGATTAATCTGCTTTGCTAATTAATTAGCCATGCAAAATAGAACAGAGGTATAACGTCCTCTGAACTATTTTTCTTCTACTTATGAATAATTTTTTGTGATACCTATATTACGTTTGGAGCTTCGGATTAAAACATGAAAAGGATCTTTTTTTTTTTTTTTTTTTTTTTTGCCTTACGTATTCATTAGCTCTTTGTTGTTAGCTCATCAATTTTGGTGGAAATGAGGTATATATCAAGTGGTAAAGGGTTTAAGAACTTCTATGGATTTGATCATCTGAAAAATGGATCGTTAGCTATATTCTGTGTTGAGTTGATGGGTGTTGCAGTTATTAGGAAATCCACAAACAAAGATTATAGCAAACGTAAAATAGAGTAGAATCAACTTTCAAATGTCCACGAGACAGAGGAAGAGTAATTTTATTAGAGAGAATGTTAGTGTCTAGGACTAAAGAGTTTATATAGTGCCCTGTAATTGGTCCCTCCAAGGGCTGCATAATAGATTTAAGGTACTCCAACAAGTTTTAGTTACCTGATAGGGAATCAAGAAAAGAAGGAATTCATTTCATATAAATCTTTTAAGGGAATTCTTTTGTCCTTTACTTGGTATAGTATTTAAGTACATTCTGGTCCATGGATTATCCAAGCAATTCTGTCATGCAGTTAACGTAACAAGCTTTCTTGGTCCTTTCCTTTGGATGGTGAACAATCCTTGACAAACTTGATATATATTTAGGTGTTTCTTTGGATTTTGGTACGCTCTAGTTGGCTACTTACCATTTATATGAAATCAATTAGGATAACAGAGTTTGGTTGATTAGGATGGAGATCATAATGGGAAAAAGAATAACAAAAGTATAACGTTCTGATTTTAAGAGGAGAATGTGAATGTACTGAGACCACATTTGAATGTGACATCTTGAGGATATGAATATATGGTTAAGAAAAGTTTAAAAGAATTTAAAGTTGCAACCTGTGCCAATAATTTTTGGACTCTTTTTTTGAATTGTGCAACTTACAGGATTTGTGACTAGTTCTTGGTGCTTGAACTGATATATGATGCTTCAGTAGAAGTCAAGTTTGAGATTGATTATACCTCAATTTCATATTCTTCAATTGCCTAGTTTAAAACAACGTTGTTATAGACAAAACAAGAACAAGCAATTTAAGTAAAGACACAAGTATCATATGGCCAATTATTGAGTACTGAGCTTGAGTGCCGTATGGAAATTGCATATGAATTGGTTATTATTTTTTTCATTCTGAATTAATTGGGAGCATGCTTGGGCCCATTTATTTCTTGAGACTTCCTTTTCTTAGTATTCTGTTTTAGATATTTATTAAACAAACAAACAGTAAGGAATGTAGAAAGAATCTAATCTATCCCCATGTCCCTTGCAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGTCGGTGAGTTGAAAGCTAACATTCCTTCTTTGGCACCCAATGAGATATTCAGATCTCTCATCCATTTTTTTCGTTCCTGATTTGCGACTCTGCAGTCTACCGATGGCTCTGAAGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAAACTGCTCCTTTAAACTTCGATTTCTTCAATGTACCCGAAAAGGTTGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCTGAATCTACTAAACGCGAATGGGTAGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

mRNA sequence

ATGTCTGCTTCTGGAACTTCATTTCCGGACTCCGATTGGCCCCGTCCTCATGATCCGATCCGACCCGACTTACCTTTCTCCCATCACCTCCCTCCTGACCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCTACCTCCTCCCCCACTCCCGCCACCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCTCTAACTTCTTCCACTCGCCGATCTCCATTACGCCCCGACCCTCTCAACTCTTTCAACGGAGATTCTTCCCCTTCCAAGAAAGTCTCCGCTTCTAACTCTGCCTCTTCGAAATCTGCCTTGTCTGAGCGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACCGCTGGAACCGTCGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGTCGTCTACCGATGGCTCTGAAGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAAACTGCTCCTTTAAACTTCGATTTCTTCAATGTACCCGAAAAGGTTGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCTGAATCTACTAAACGCGAATGGGTAGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCATTTCCGGACTCCGATTGGCCCCGTCCTCATGATCCGATCCGACCCGACTTACCTTTCTCCCATCACCTCCCTCCTGACCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCTACCTCCTCCCCCACTCCCGCCACCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCTCTAACTTCTTCCACTCGCCGATCTCCATTACGCCCCGACCCTCTCAACTCTTTCAACGGAGATTCTTCCCCTTCCAAGAAAGTCTCCGCTTCTAACTCTGCCTCTTCGAAATCTGCCTTGTCTGAGCGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACCGCTGGAACCGTCGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACGTTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGTCGTCTACCGATGGCTCTGAAGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAAACTGCTCCTTTAAACTTCGATTTCTTCAATGTACCCGAAAAGGTTGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCTGAATCTACTAAACGCGAATGGGTAGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTGA

Protein sequence

MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPTLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLLGRSKV*

Homology

[Close]

BLAST of Chy12G207980 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.9e-30
Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = 0


Query: 98  PSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSK 157
           P    +  +S S K A     NWLPP W  E RVR+SG  AGTVDK+Y++P++ R+FRSK
Sbjct: 12  PENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSK 71

Query: 158 IEVLYFLETGTLRKRK-KSLDGNPSSTDGSE-------EPKGKKSSSNAKTAPLNFDFFN 217
            EVLY+LE GT +K+  K+ +   S ++ SE       + K  K  +     PLNFDF N
Sbjct: 72  NEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLN 131

Query: 218 VPEKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 251
           VPEKV W   + S++AW PFI + K+ ES  ++W   F L+
Sbjct: 132 VPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Chy12G207980 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-29
Identity = 82/234 (35.04%), Postives = 126/234 (53.85%), Query Frame = 0


Query: 31  PPDPLLSAGSFIDSSTSSPTPATSTVPSPTLPSRDLDRTPRKTPLTSSTRRSPLRPDPLN 90
           PPDPLL++G+FI S+                             L SS +R P++     
Sbjct: 10  PPDPLLASGAFISSAGDG-------------------------TLDSSAKRRPIQGGIGI 69

Query: 91  SFNGDS------SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKY 150
           S +G+S      + + +V+    + S+   +   NWLPPGW VED++R+SGATAG+VDKY
Sbjct: 70  SGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKY 129

Query: 151 YFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTA--- 210
           Y++P + R+FRS+ EVLY+LE GT ++  K  +    + D  E   G+ S+   +TA   
Sbjct: 130 YYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFE---GQGSNRVTRTATVP 189

Query: 211 -----PLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 251
                PL+FDF N P+KV W + +  ++ W P I + KV +S +R+W  AF  +
Sbjct: 190 PPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of Chy12G207980 vs. ExPASy Swiss-Prot
Match: Q9UBB5 (Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-04
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 121 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFL 165
           LPPGW  E+ +R SG +AG  D YYF P S ++FRSK ++  +L
Sbjct: 155 LPPGWKKEEVIRKSGLSAGKSDVYYFSP-SGKKFRSKPQLARYL 197

[Close]

BLAST of Chy12G207980 vs. ExPASy TrEMBL
Match: A0A0A0LXE4 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 5.1e-137
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 60
           MSASGTSFPDSDWPRPHDP RPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 120
           LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 143

Query: 121 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 180
           LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP
Sbjct: 144 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 203

Query: 181 SSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK 240
           SSTD SEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK
Sbjct: 204 SSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK 263

Query: 241 REWVGAFQLLGRSKV 256
            EWVGAFQLLGRSKV
Sbjct: 264 CEWVGAFQLLGRSKV 278

[Close]

BLAST of Chy12G207980 vs. ExPASy TrEMBL
Match: A0A5D3BC42 (Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002210 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.4e-131
Identity = 244/256 (95.31%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPA-TSTVPSP 60
           MSASGTS PDSDWPRPHDP RPDLPFSHHLPPDPLLSAGSFIDSS+SS T    STVPSP
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180

Query: 181 PSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           PSSTDGS+EPKGKKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 181 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240

Query: 241 KREWVGAFQLLGRSKV 256
           K EWVGAFQLLGRSKV
Sbjct: 241 KCEWVGAFQLLGRSKV 256

[Close]

BLAST of Chy12G207980 vs. ExPASy TrEMBL
Match: A0A1S3C6A2 (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.4e-131
Identity = 244/256 (95.31%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPA-TSTVPSP 60
           MSASGTS PDSDWPRPHDP RPDLPFSHHLPPDPLLSAGSFIDSS+SS T    STVPSP
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 83

Query: 61  TLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 84  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 143

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 144 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 203

Query: 181 PSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           PSSTDGS+EPKGKKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 204 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 263

Query: 241 KREWVGAFQLLGRSKV 256
           K EWVGAFQLLGRSKV
Sbjct: 264 KCEWVGAFQLLGRSKV 279

[Close]

BLAST of Chy12G207980 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 4.6e-98
Identity = 203/267 (76.03%), Postives = 213/267 (79.78%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 60
           MSASGTSFPD DWPR     RPDLP  HH PPDPLLS+GSFIDSST+       T+PS  
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTA----RCGTLPSSP 60

Query: 61  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NSA 120
             +RDLD   RK P TS+T RSPL  DPLN            NGDSS  KKVSAS    A
Sbjct: 61  DYARDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDA 120

Query: 121 SSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGT 180
           S KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGT
Sbjct: 121 SPKSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGT 180

Query: 181 LRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTP 240
           LRKRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTP
Sbjct: 181 LRKRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTP 240

Query: 241 FIDNEKVPESTKREWVGAFQLLGRSKV 256
           FI+NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 FINNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Chy12G207980 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 7.9e-98
Identity = 202/267 (75.66%), Postives = 212/267 (79.40%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 60
           MSASGTSFPD DWPR     RPDLP  HH PPDPLLS+GSFIDSST+       T+PS  
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTA----RCGTLPSSP 60

Query: 61  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NSA 120
             +RDLD   R  P TS+T RSPL  DPLN            NGDSS  KKVSAS    A
Sbjct: 61  DYARDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDA 120

Query: 121 SSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGT 180
           S KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGT
Sbjct: 121 SPKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGT 180

Query: 181 LRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTP 240
           LRKRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTP
Sbjct: 181 LRKRKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTP 240

Query: 241 FIDNEKVPESTKREWVGAFQLLGRSKV 256
           FI+NEKVPESTKREWV AFQLLGRSK+
Sbjct: 241 FINNEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of Chy12G207980 vs. NCBI nr
Match: XP_011658162.2 (methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hypothetical protein Csa_019834 [Cucumis sativus])

HSP 1 Score: 498 bits (1281), Expect = 5.71e-177
Identity = 253/255 (99.22%), Postives = 253/255 (99.22%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 60
           MSASGTSFPDSDWPRPHDP RPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 120
           LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 143

Query: 121 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 180
           LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP
Sbjct: 144 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 203

Query: 181 SSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK 240
           SSTD SEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK
Sbjct: 204 SSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK 263

Query: 241 REWVGAFQLLGRSKV 255
           REWVGAFQLLGRSKV
Sbjct: 264 REWVGAFQLLGRSKV 278

[Close]

BLAST of Chy12G207980 vs. NCBI nr
Match: KAA0067742.1 (methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97402.1 methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 474 bits (1221), Expect = 3.58e-168
Identity = 244/256 (95.31%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPAT-STVPSP 60
           MSASGTS PDSDWPRPHDP RPDLPFSHHLPPDPLLSAGSFIDSS+SS T    STVPSP
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180

Query: 181 PSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           PSSTDGS+EPKGKKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 181 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240

Query: 241 KREWVGAFQLLGRSKV 255
           K EWVGAFQLLGRSKV
Sbjct: 241 KCEWVGAFQLLGRSKV 256

[Close]

BLAST of Chy12G207980 vs. NCBI nr
Match: XP_008457481.2 (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 474 bits (1221), Expect = 8.26e-168
Identity = 244/256 (95.31%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPAT-STVPSP 60
           MSASGTS PDSDWPRPHDP RPDLPFSHHLPPDPLLSAGSFIDSS+SS T    STVPSP
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 83

Query: 61  TLPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 84  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 143

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 144 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 203

Query: 181 PSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           PSSTDGS+EPKGKKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 204 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 263

Query: 241 KREWVGAFQLLGRSKV 255
           K EWVGAFQLLGRSKV
Sbjct: 264 KCEWVGAFQLLGRSKV 279

[Close]

BLAST of Chy12G207980 vs. NCBI nr
Match: XP_038893740.1 (LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa hispida])

HSP 1 Score: 399 bits (1025), Expect = 8.39e-138
Identity = 215/272 (79.04%), Postives = 228/272 (83.82%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 60
           MSASGTSFPD DWPR  DP RPDLPFSHHLPPDPLL AGSF+DSS+S+       +P+PT
Sbjct: 26  MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFVDSSSSA-------LPAPT 85

Query: 61  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFN----------GDSSPSKKVSASNS--- 120
           LPSRDLDRTPRK   +SST RSPLR  PLNSFN          GDS  +KKVS S S   
Sbjct: 86  LPSRDLDRTPRKKAESSSTPRSPLRAGPLNSFNLPPDSSAPRNGDSPATKKVSLSASSSR 145

Query: 121 ----ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYF 180
               AS KSALSERPNWLPPGWVV+DRVRSSGATAGTVDKYYFDP+SNRRFRSKIEVLYF
Sbjct: 146 GTTDASLKSALSERPNWLPPGWVVQDRVRSSGATAGTVDKYYFDPISNRRFRSKIEVLYF 205

Query: 181 LETGTLRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQ 240
           LETGTLRKRKKSLDGNP+STDGSEEPK KKSSSNAK+APLNFDFFNVPEKVEWVLTDPS+
Sbjct: 206 LETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSK 265

Query: 241 DAWTPFIDNEKVPESTKREWVGAFQLLGRSKV 255
           DAWTPFI +EKV ESTKR WVGAFQLLGRSKV
Sbjct: 266 DAWTPFIGSEKVRESTKRAWVGAFQLLGRSKV 289

[Close]

BLAST of Chy12G207980 vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 365 bits (938), Expect = 5.64e-125
Identity = 203/267 (76.03%), Postives = 213/267 (79.78%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPHDPIRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 60
           MSASGTSFPD DWPR     RPDLP  HH PPDPLLS+GSFIDSST+       T+PS  
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTA----RCGTLPSSP 60

Query: 61  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSF----------NGDSSPSKKVSASNS--A 120
             +RDLD   RK P TS+T RSPL  DPLN            NGDSS  KKVSAS    A
Sbjct: 61  DYARDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDA 120

Query: 121 SSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGT 180
           S KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGT
Sbjct: 121 SPKSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGT 180

Query: 181 LRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTP 240
           LRKRKKSLDGN  S DGSEEPK KKSSSNAK+APLNFDFFNVPEKVEWVLTDPSQ+AWTP
Sbjct: 181 LRKRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTP 240

Query: 241 FIDNEKVPESTKREWVGAFQLLGRSKV 255
           FI+NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 FINNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of Chy12G207980 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 132.1 bits (331), Expect = 6.3e-31
Identity = 70/161 (43.48%), Postives = 96/161 (59.63%), Query Frame = 0


Query: 98  PSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSK 157
           P    +  +S S K A     NWLPP W  E RVR+SG  AGTVDK+Y++P++ R+FRSK
Sbjct: 12  PENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSK 71

Query: 158 IEVLYFLETGTLRKRK-KSLDGNPSSTDGSE-------EPKGKKSSSNAKTAPLNFDFFN 217
            EVLY+LE GT +K+  K+ +   S ++ SE       + K  K  +     PLNFDF N
Sbjct: 72  NEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLN 131

Query: 218 VPEKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 251
           VPEKV W   + S++AW PFI + K+ ES  ++W   F L+
Sbjct: 132 VPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of Chy12G207980 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 130.6 bits (327), Expect = 1.8e-30
Identity = 82/234 (35.04%), Postives = 126/234 (53.85%), Query Frame = 0


Query: 31  PPDPLLSAGSFIDSSTSSPTPATSTVPSPTLPSRDLDRTPRKTPLTSSTRRSPLRPDPLN 90
           PPDPLL++G+FI S+                             L SS +R P++     
Sbjct: 10  PPDPLLASGAFISSAGDG-------------------------TLDSSAKRRPIQGGIGI 69

Query: 91  SFNGDS------SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKY 150
           S +G+S      + + +V+    + S+   +   NWLPPGW VED++R+SGATAG+VDKY
Sbjct: 70  SGSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKY 129

Query: 151 YFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPSSTDGSEEPKGKKSSSNAKTA--- 210
           Y++P + R+FRS+ EVLY+LE GT ++  K  +    + D  E   G+ S+   +TA   
Sbjct: 130 YYEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFE---GQGSNRVTRTATVP 189

Query: 211 -----PLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 251
                PL+FDF N P+KV W + +  ++ W P I + KV +S +R+W  AF  +
Sbjct: 190 PPPPPPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

The following BLAST results are available for this feature:

BLAST of Chy12G207980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC0	8.9e-30	43.48	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LTJ1	2.6e-29	35.04	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9UBB5	1.7e-04	50.00	Methyl-CpG-binding domain protein 2 OS=Homo sapiens OX=9606 GN=MBD2 PE=1 SV=1	[more]

BLAST of Chy12G207980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE4	5.1e-137	98.82	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV...	[more]
A0A5D3BC42	5.4e-131	95.31	Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C6A2	5.4e-131	95.31	methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1KC76	4.6e-98	76.03	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1GAC7	7.9e-98	75.66	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]

BLAST of Chy12G207980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011658162.2	5.71e-177	99.22	methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hyp...	[more]
KAA0067742.1	3.58e-168	95.31	methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97...	[more]
XP_008457481.2	8.26e-168	95.31	PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo]	[more]
XP_038893740.1	8.39e-138	79.04	LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa h...	[more]
XP_022998335.1	5.64e-125	76.03	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima...	[more]

BLAST of Chy12G207980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46580.1	6.3e-31	43.48	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	1.8e-30	35.04	methyl-CPG-binding domain 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 114..213 e-value: 3.5E-13 score: 49.0
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 111..183 score: 14.547751
None	No IPR available	GENE3D	3.30.890.10		coord: 90..204 e-value: 2.5E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..116
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 100..241
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 100..241
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 104..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207980.1	Chy12G207980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding