Chy12G207940 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207940
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Phytosulfokine-beta
Location	chrH12: 2369541 .. 2369893 (+)
RNA-Seq Expression	Chy12G207940
Synteny	Chy12G207940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGAATCTCGCAGCTCTCATCACCATTATTGCAGCACTTGTAACAATAATGTCCCTCATCATCATACCATCCTCTCAAGCTACCACTTCATGTGAACCCCCACATCGAGTAAGTTTAATTTTATTTCAAAAATCTCCCTTCAAAACTCATTAATATAATTATTTCATTCTTAATTTCCGTTACTGCGTATTTCTTTAATTAATCAGATTGTTTCTCAAGAGCTCGTCGCTGATCAAAATAACGACGGACCATGTGAAGGACTAGGAAAAGAAGATTGTCTGATTAGAAAAACCTTACAGGCTCATACTGATTACGTTTATACTTGTGATAATCCAACCAAAGCATGA

mRNA sequence

ATGTCGAAGAATCTCGCAGCTCTCATCACCATTATTGCAGCACTTGTAACAATAATGTCCCTCATCATCATACCATCCTCTCAAGCTACCACTTCATGTGAACCCCCACATCGAATTGTTTCTCAAGAGCTCGTCGCTGATCAAAATAACGACGGACCATGTGAAGGACTAGGAAAAGAAGATTGTCTGATTAGAAAAACCTTACAGGCTCATACTGATTACGTTTATACTTGTGATAATCCAACCAAAGCATGA

Coding sequence (CDS)

ATGTCGAAGAATCTCGCAGCTCTCATCACCATTATTGCAGCACTTGTAACAATAATGTCCCTCATCATCATACCATCCTCTCAAGCTACCACTTCATGTGAACCCCCACATCGAATTGTTTCTCAAGAGCTCGTCGCTGATCAAAATAACGACGGACCATGTGAAGGACTAGGAAAAGAAGATTGTCTGATTAGAAAAACCTTACAGGCTCATACTGATTACGTTTATACTTGTGATAATCCAACCAAAGCATGA

Protein sequence

MSKNLAALITIIAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCLIRKTLQAHTDYVYTCDNPTKA*

Homology

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BLAST of Chy12G207940 vs. ExPASy Swiss-Prot
Match: Q9FS10 (Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.5e-07
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 15 LVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCLIRKTLQAHTDY 74
          L+ I  L  +  +QA    +P     S  ++ ++ +D  CEG+G+E+CL+R+TL AH DY
Sbjct: 8  LLLIALLFSLSLAQAARPLQPADSTKSVHVIPEKVHDEACEGVGEEECLMRRTLTAHVDY 67

Query: 75 VYTCDN 81
          +YT D+
Sbjct: 68 IYTQDH 73

[Close]

BLAST of Chy12G207940 vs. ExPASy Swiss-Prot
Match: Q9M2Y0 (Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 2.8e-04
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 12 IAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCLIRKTLQAH 71
          I AL+   +L        TT+         +E+  D+  +  C G+G+E+CLIR++L  H
Sbjct: 9  IMALLLCSTLTYAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIRRSLVLH 68

Query: 72 TDYVYT 78
          TDY+YT
Sbjct: 69 TDYIYT 74

[Close]

BLAST of Chy12G207940 vs. ExPASy Swiss-Prot
Match: Q9FEB4 (Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-04
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 54 CEGLGKEDC-LIRKTLQAHTDYVYT 78
          CEG+G+E+C LIR+TL AHTDY+YT
Sbjct: 48 CEGVGEEECFLIRRTLVAHTDYIYT 72

[Close]

BLAST of Chy12G207940 vs. ExPASy TrEMBL
Match: A0A5A7V550 (Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001000 PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.6e-21
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1  MSKNLAALITIIAALVTIMSLIIIPSSQAT----TSCEPPHRIVSQELVADQNNDG-PCE 60
          MSK LAAL TIIAALVTIMSLI+IPSS+A     +  +P + IVS+ELVAD NN+G  CE
Sbjct: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60

Query: 61 GLGKEDCLIRKTLQAHTDYVYTCDNPTK 84
          GLGKEDCLI++TLQAH DYVYTCD PTK
Sbjct: 61 GLGKEDCLIKRTLQAHIDYVYTCD-PTK 87

[Close]

BLAST of Chy12G207940 vs. ExPASy TrEMBL
Match: A0A0A0LR23 (Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.9e-20
Identity = 56/83 (67.47%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 1  MSKNLAALITIIAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKE 60
          MSKNLA+L T IAAL TIMSLII+PSS+       P   +  E   + NNDG CEG GKE
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEGRPI---PSFELIPEFATNHNNDGSCEGSGKE 60

Query: 61 DCLIRKTLQAHTDYVYTCDNPTK 84
          DCLIR+TLQAHTDYVYTCDNPTK
Sbjct: 61 DCLIRRTLQAHTDYVYTCDNPTK 80

[Close]

BLAST of Chy12G207940 vs. ExPASy TrEMBL
Match: A0A2P5AUV2 (Phytosulfokine-beta OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298170 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.5e-05
Identity = 26/53 (49.06%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 25 PSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCLIRKTLQAHTDYVYT 78
          P   AT   +  HR+V  E V  +  D  CEG+G+E+CL+R+TL AHTDY+YT
Sbjct: 28 PGFAATVPAKTQHRVVEAEQV--EVGDESCEGVGEEECLMRRTLAAHTDYIYT 78

[Close]

BLAST of Chy12G207940 vs. ExPASy TrEMBL
Match: A0A6A5MZE7 (Phytosulfokine-beta OS=Lupinus albus OX=3870 GN=Lal_00011559 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 24 IPSSQATTSCEPPHRIVSQELVADQNNDG-PCEGLGKEDCLIRKTLQAHTDYVYT 78
          +P+S    S +  H I+ +E V   N +G  CEG+G+EDCL+R+TL AHTDY+YT
Sbjct: 47 VPASSLDISNKSKHEIIEEESV---NMEGSSCEGIGEEDCLMRRTLVAHTDYIYT 98

[Close]

BLAST of Chy12G207940 vs. ExPASy TrEMBL
Match: A0A2P5FS83 (Phytosulfokine-beta OS=Trema orientale OX=63057 GN=TorRG33x02_032990 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.8e-05
Identity = 25/53 (47.17%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 25 PSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCLIRKTLQAHTDYVYT 78
          P   AT   +  H +V  E V  +  D  CEG+G+E+CL+R+TL AHTDY+YT
Sbjct: 28 PGFSATVPAQTQHGVVEAEQV--EVGDESCEGVGEEECLMRRTLAAHTDYIYT 78

[Close]

BLAST of Chy12G207940 vs. NCBI nr
Match: XP_031739822.1 (phytosulfokines-like [Cucumis sativus] >KAE8653250.1 hypothetical protein Csa_020040 [Cucumis sativus])

HSP 1 Score: 150 bits (379), Expect = 2.34e-45
Identity = 77/84 (91.67%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MSK-NLAALITIIAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGK 60
          MSK NLAALIT++AALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNND PCEG GK
Sbjct: 1  MSKINLAALITLLAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDEPCEGPGK 60

Query: 61 EDCLIRKTLQAHTDYVYTCDNPTK 83
          EDCLIR+TLQAHTDYVYTCDNPT+
Sbjct: 61 EDCLIRRTLQAHTDYVYTCDNPTE 84

[Close]

BLAST of Chy12G207940 vs. NCBI nr
Match: XP_031744017.1 (phytosulfokines-like [Cucumis sativus] >KAE8653241.1 hypothetical protein Csa_019762 [Cucumis sativus])

HSP 1 Score: 147 bits (371), Expect = 3.90e-44
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 0


Query: 4  NLAALITIIAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCL 63
          NL ALIT++AALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNND PCEG GKEDCL
Sbjct: 5  NLPALITLLAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDEPCEGPGKEDCL 64

Query: 64 IRKTLQAHTDYVYTCDNPT 82
          IR+TLQAHTDYVYTCDNPT
Sbjct: 65 IRRTLQAHTDYVYTCDNPT 83

[Close]

BLAST of Chy12G207940 vs. NCBI nr
Match: XP_031736089.1 (phytosulfokines-like [Cucumis sativus] >XP_031737677.1 phytosulfokines-like [Cucumis sativus] >KAE8653242.1 hypothetical protein Csa_019948 [Cucumis sativus] >KAE8653248.1 hypothetical protein Csa_019586 [Cucumis sativus])

HSP 1 Score: 146 bits (368), Expect = 1.12e-43
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 1  MSK-NLAALITIIAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGK 60
          MSK NL ALI ++AALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNND PCEG GK
Sbjct: 1  MSKINLPALIILLAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDEPCEGPGK 60

Query: 61 EDCLIRKTLQAHTDYVYTCDNPTK 83
          EDCLIR+TLQAHTDYVYTCDNPT+
Sbjct: 61 EDCLIRRTLQAHTDYVYTCDNPTE 84

[Close]

BLAST of Chy12G207940 vs. NCBI nr
Match: KAA0060965.1 (phytosulfokines-like [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 3.74e-29
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 0


Query: 1  MSKNLAALITIIAALVTIMSLIIIPSSQATTSC----EPPHRIVSQELVADQNNDG-PCE 60
          MSK LAAL TIIAALVTIMSLI+IPSS+A        +P + IVS+ELVAD NN+G  CE
Sbjct: 1  MSKKLAALFTIIAALVTIMSLIVIPSSEAARPIPSLFKPQNPIVSRELVADHNNEGISCE 60

Query: 61 GLGKEDCLIRKTLQAHTDYVYTCDNPTK 83
          GLGKEDCLI++TLQAH DYVYTCD PTK
Sbjct: 61 GLGKEDCLIKRTLQAHIDYVYTCD-PTK 87

[Close]

BLAST of Chy12G207940 vs. NCBI nr
Match: KGN62431.1 (hypothetical protein Csa_018781 [Cucumis sativus])

HSP 1 Score: 105 bits (261), Expect = 2.07e-27
Identity = 56/83 (67.47%), Postives = 63/83 (75.90%), Query Frame = 0


Query: 1  MSKNLAALITIIAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKE 60
          MSKNLA+L T IAAL TIMSLII+PSS+      P   ++  E   + NNDG CEG GKE
Sbjct: 1  MSKNLASLTTTIAALATIMSLIIVPSSEGRPI--PSFELIP-EFATNHNNDGSCEGSGKE 60

Query: 61 DCLIRKTLQAHTDYVYTCDNPTK 83
          DCLIR+TLQAHTDYVYTCDNPTK
Sbjct: 61 DCLIRRTLQAHTDYVYTCDNPTK 80

[Close]

BLAST of Chy12G207940 vs. TAIR 10
Match: AT3G49780.1 (phytosulfokine 4 precursor )

HSP 1 Score: 45.8 bits (107), Expect = 2.0e-05
Identity = 23/66 (34.85%), Postives = 36/66 (54.55%), Query Frame = 0


Query: 12 IAALVTIMSLIIIPSSQATTSCEPPHRIVSQELVADQNNDGPCEGLGKEDCLIRKTLQAH 71
          I AL+   +L        TT+         +E+  D+  +  C G+G+E+CLIR++L  H
Sbjct: 9  IMALLLCSTLTYAARLTPTTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIRRSLVLH 68

Query: 72 TDYVYT 78
          TDY+YT
Sbjct: 69 TDYIYT 74

[Close]

BLAST of Chy12G207940 vs. TAIR 10
Match: AT5G65870.1 (phytosulfokine 5 precursor )

HSP 1 Score: 44.7 bits (104), Expect = 4.4e-05
Identity = 18/25 (72.00%), Postives = 23/25 (92.00%), Query Frame = 0


Query: 54 CEGLGKEDC-LIRKTLQAHTDYVYT 78
          CEG+G+E+C LIR+TL AHTDY+YT
Sbjct: 48 CEGVGEEECFLIRRTLVAHTDYIYT 72

The following BLAST results are available for this feature:

BLAST of Chy12G207940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FS10	3.5e-07	37.88	Phytosulfokines OS=Asparagus officinalis OX=4686 GN=PSK PE=1 SV=1	[more]
Q9M2Y0	2.8e-04	34.85	Phytosulfokines 3 OS=Arabidopsis thaliana OX=3702 GN=PSK3 PE=2 SV=2	[more]
Q9FEB4	6.2e-04	72.00	Phytosulfokines 5 OS=Arabidopsis thaliana OX=3702 GN=PSK5 PE=2 SV=1	[more]

BLAST of Chy12G207940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V550	2.6e-21	71.59	Phytosulfokine-beta OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G...	[more]
A0A0A0LR23	4.9e-20	67.47	Phytosulfokine-beta OS=Cucumis sativus OX=3659 GN=Csa_2G354080 PE=3 SV=1	[more]
A0A2P5AUV2	1.5e-05	49.06	Phytosulfokine-beta OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298170 PE=3 S...	[more]
A0A6A5MZE7	2.0e-05	49.09	Phytosulfokine-beta OS=Lupinus albus OX=3870 GN=Lal_00011559 PE=3 SV=1	[more]
A0A2P5FS83	5.8e-05	47.17	Phytosulfokine-beta OS=Trema orientale OX=63057 GN=TorRG33x02_032990 PE=3 SV=1	[more]

BLAST of Chy12G207940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739822.1	2.34e-45	91.67	phytosulfokines-like [Cucumis sativus] >KAE8653250.1 hypothetical protein Csa_02...	[more]
XP_031744017.1	3.90e-44	92.41	phytosulfokines-like [Cucumis sativus] >KAE8653241.1 hypothetical protein Csa_01...	[more]
XP_031736089.1	1.12e-43	89.29	phytosulfokines-like [Cucumis sativus] >XP_031737677.1 phytosulfokines-like [Cuc...	[more]
KAA0060965.1	3.74e-29	71.59	phytosulfokines-like [Cucumis melo var. makuwa]	[more]
KGN62431.1	2.07e-27	67.47	hypothetical protein Csa_018781 [Cucumis sativus]	[more]

BLAST of Chy12G207940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49780.1	2.0e-05	34.85	phytosulfokine 4 precursor	[more]
AT5G65870.1	4.4e-05	72.00	phytosulfokine 5 precursor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009438	Phytosulfokine	PFAM	PF06404	PSK	coord: 39..79 e-value: 6.2E-9 score: 36.8
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..33 score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207940.1	Chy12G207940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0008283	cell population proliferation
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0016020	membrane
molecular_function	GO:0008083	growth factor activity