Chy12G207920 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207920
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RING-type E3 ubiquitin transferase
Location	chrH12: 2358417 .. 2362042 (-)
RNA-Seq Expression	Chy12G207920
Synteny	Chy12G207920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAAGAATCTCATTCCTTTTACAACTCTTTCACTCTTCCAAAAACGCATCACTGAAAAAAAGAGGAAACAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCATTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCGTCTCGTTTATTCATTTCCTTCTTGAGCTTTCTGTTTTCTTTCAATTGTGAATAATTCTTTTTGTTTGAGTTTCATTGGTTAGTTGGATTCGATAATATTTAATTCATTCGTTTTCTTTTTTTCTTTTTGAAAGAATCAAAAGCTGATTATTGATTTGTTAGTTGTAGTGAATCATAATTTGTTTTTGTGTTTTAGATGTGTATGGATCGATTATTTCATTGACTCATTCTTTTCTATTTTAATTTTGTTGTTTTGGTGTGATTAATTAGTTTAATCTCCCCCTCCAATGAACTTAATTAGCTCACACCAATGGATATTTTTGTATGATTCACCTAACTTTTTGTTTGGATTAATGAAATTTACTTCCTATTTGCATCCACTATGGTGAAACTTTCTAATTTATTCTAAATTTTTTAGGTTACGTAATATTTTGATGCTAAATTTGTCAAATTATTCATTAGTAGATGATACACTACTTATTTTATATATAATTAATTGTGGATTCTAACATGCCTAATTGATAAGATTATTACATGTTGCACAAGCATCAACGTATACATTAAAATTAGTTGAATGACTGCACCAAATACTATCTCAAAGTTACTTTTATCAATACATAATCAAGATTGTTGCATTCACCTCAATGTCAAAGAGAGTAAGATTCATTTTGATTATGTTTGCTGCCAAAGTTGAAACTTAATTGGTGTTTCCTTTCAAATCCTAATGAAATATAAATGATATTTTATATTTCTAATAATTAATTAAAATGCAGTAAATGAATAATTTTATGAGAATTGAAATATACCGTAACCACATTGATATTTGTTAAAAATTATCACTAATATTCTCATGATCATTAGCACAAAACAGTAAAATCGTAGCTTATCCTCTTAGAAAAACAATGATATAGGATACTATTAAGGCCTCGACTACCATTATTGATATTATCAAATTAATACTCTCATATCTTCAATCACTATGGTGTAGGTAATATATTTCTTTGTGGGACAAGTTGATTAGGATTACATGGTGTTAATAAACGACTACAAACATAATTAAATGGGTACCGTTTTTTTCATTATAAACATTGAAATTATTATAGGATCCTAGTGGTAAATATGAGTGCATGACCTTAATATATGGTAGTCGCCTACCTAAGATTTAATATTTTAAATTTTCTTACAAACAAGGTAGGATCACACAGATTATCTTACAAAATTAGTCGAGATACACGTAAAGCTAATAAAATATTTATGGATATAAAAAAAATATTTATATGAAGTAAAGGTGGCCAAATTCTTAATTAGGTAGAATAAACATCGATAAGAATATTAAAATGCAAGATTTTGAATTCCTGGGTCAATTATTTGTTATATTTGAAAATACTTCTTCTTTTTTTTTTTTTTATTGAAAATTTGTTCTCCAAAATTACTTTTATTTACAATTAAAAAATCAAGTTTGCATAAAGAAATTAAATAATTATAAATTAACAAGATTTACAGAATAAATTAATAAATTTTTTTGTTTTTTTTAAGTTTGAGACTAAAACAAACCCTTTTAAAAGTTGAATGAGCATTTTTTAAAATAATATGATAAATAATTATAAAAAAAGTGATATTGTATATATTTTTAAAATAAAGAAAATAGTTTTGTAAAACAAAAAAGAAAGTATGTTGATCCACTCAAATAAAATTAGAAATTTTTTACTAAAGACAAAAAAAGAAAAGAAGAAAAGAAGAAAAAGAAAAAGAAAAAGATGTTCTAAATAAGTTCAAAACCAGCCATTTGCACCGTTTATAATTTCAAAACTACCCTCATTGTCCAATTAATCCTAAAATCGGACTTCAAAATTAATTCAATGTTAGTGAAATAAGAATATATGAAAACTTATTTAAAATGATTTAAAAAAAAATTTACAAATATAATAAAATATCAAAATCTTCATGTGATAGATGAAGATAGACTATTTTTCGTATCTAATACAAACAGAAACAGAAAATATCTATGTTTGTATTATTCCATAAAAATAAAATTAGTTAAACATAATTTAAATTCGAAAGAAAATTATTCCGGGAAAGACGGAAGTTCCAAATCTATACAAATTATTAAAATTAATTAAACCAAACTAACAAGTAATAGTTAAAATTAGACCCTAAATTATAAAAGTTAAAAAAGTAAAAAAAATCAAACCCTCAAAATTTATTAAAATTGAAACTTTAAATTCTCTTGAAAATGAGTGAAAATCGAGGTTGAAGATAAAAGTCTCTAATTTATTTAACATTAAGATATTCAAATTGAAAATTTAAACTTGATACAAATAATTTTTGAAAAGGTTTCGTAATCACAATTCCAATTTGGTTGATCACATCACAAGTGAGTAAAAATCTTTTAAAGATTTCCAAATTTCCCATTTTAATATAATATTTATAACAATTAAATCCATCAAATTGATCATATTATATGTTTAATTCTTCCACCATATAATCTTCCAAAATTCATGTCTCTTAAGAAGATGATCATCTTCCAACCGCCACCCTTCAACATCATAATTGCTATCTTCCGCCGTCGTTTATGATTTCCAACAACCAAAAGATGGGATTCTTGTTTGTGAGCGTCATTTGTATCGTTGTAATCATCTTCCTTTTCCGTTTCTACCATTACCGTCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGAACGACTCCACGAACACCGTACAACGCAACTCTTTACTCAACTTCAAGCCGAAATCGTAAGGCAACGGCAGACTAGGACGAATAACAGGATGGAAGGCGAAGAACCTTCTTCTGCTGTCATGACGGTTGCTTACACAGTGAAGGATGAAGACGGTTCGTACTGTGGCTGTGCCATATGCGTCGAAGAGTTTGAGGATGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGGCCATTGTTTTCATATGGATTGTATGGATCAATGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGAAGGTTAG

mRNA sequence

ATGCTAAAGAATCTCATTCCTTTTACAACTCTTTCACTCTTCCAAAAACGCATCACTGAAAAAAAGAGGAAACAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCATTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCAAGATGATCATCTTCCAACCGCCACCCTTCAACATCATAATTGCTATCTTCCGCCGTCGTTTATGATTTCCAACAACCAAAAGATGGGATTCTTGTTTGTGAGCGTCATTTGTATCGTTGTAATCATCTTCCTTTTCCGTTTCTACCATTACCGTCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGAACGACTCCACGAACACCGTACAACGCAACTCTTTACTCAACTTCAAGCCGAAATCGTAAGGCAACGGCAGACTAGGACGAATAACAGGATGGAAGGCGAAGAACCTTCTTCTGCTGTCATGACGGTTGCTTACACAGTGAAGGATGAAGACGGTTCGTACTGTGGCTGTGCCATATGCGTCGAAGAGTTTGAGGATGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGGCCATTGTTTTCATATGGATTGTATGGATCAATGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGAAGGTTAG

Coding sequence (CDS)

ATGCTAAAGAATCTCATTCCTTTTACAACTCTTTCACTCTTCCAAAAACGCATCACTGAAAAAAAGAGGAAACAAATGAATTCTCCGACGGCCGTATCTCCAACAACCATGCCTCCACCGCCTCCACCTCCTGACGAGTTACCCGTCGACGTCCTCTCAACTCTAGATCTCGACTTCCTAAATTTCGCAGGACTCTCCGCTCTGGCTTTGATGTTCCTCTACTTCATTTTCACCTGCTGCGAACGGAAATACTGGAACCGAAACGGCGATATCGAAGGCGGACGGTTGCCGACGGTAACGATGGATGAATCTCCGGCTTCAGAAACAGGGGATTCATCGAGAAGACGGCCGTCTTCGAGGGCGGTGATTTCGACGAGGCTGTTTCAGTACGGAGTGGGAGGAGGAGTAATAGGGAAAAATGCGGATTGTTCGATTTGTTTGGATGAATTTACCGAAGGTGAGATTTGTCGAATGCTTCCAAAATGCAAACATGTTTTTCATCGGTTTTGTATCGATCGATGGCTTCCCAATGAACGCAATTGCCCTGTTTGTCGTTCCCCTGTTTATGTTCAAGATGATCATCTTCCAACCGCCACCCTTCAACATCATAATTGCTATCTTCCGCCGTCGTTTATGATTTCCAACAACCAAAAGATGGGATTCTTGTTTGTGAGCGTCATTTGTATCGTTGTAATCATCTTCCTTTTCCGTTTCTACCATTACCGTCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGAACGACTCCACGAACACCGTACAACGCAACTCTTTACTCAACTTCAAGCCGAAATCGTAAGGCAACGGCAGACTAGGACGAATAACAGGATGGAAGGCGAAGAACCTTCTTCTGCTGTCATGACGGTTGCTTACACAGTGAAGGATGAAGACGGTTCGTACTGTGGCTGTGCCATATGCGTCGAAGAGTTTGAGGATGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGGCCATTGTTTTCATATGGATTGTATGGATCAATGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGAAGGTTAG

Protein sequence

MLKNLIPFTTLSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDDHLPTATLQHHNCYLPPSFMISNNQKMGFLFVSVICIVVIIFLFRFYHYRLRLSQTRTLDIEERLHEHRTTQLFTQLQAEIVRQRQTRTNNRMEGEEPSSAVMTVAYTVKDEDGSYCGCAICVEEFEDEEICGVVESCGHCFHMDCMDQWLKIESRCPLCRCLVHAVSHNISNSQENEG*

Homology

[Close]

BLAST of Chy12G207920 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.3e-15
Identity = 56/179 (31.28%), Postives = 79/179 (44.13%), Query Frame = 0


Query: 38  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLP 97
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 98  TVTMDESPASETGDSSRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 157
           +VT  ++   E  D +  R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 146

Query: 158 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV--QDDHLPTAT 200
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV +  +  H  T T
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETET 193

[Close]

BLAST of Chy12G207920 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-13
Identity = 44/153 (28.76%), Postives = 72/153 (47.06%), Query Frame = 0


Query: 41  PPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLPTVT 100
           PPPP+      L    L  +         L F+  ++  C         D +G R+    
Sbjct: 25  PPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDR 84

Query: 101 MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 160
           + +   + +   S      +A+ S   F++    G + +  +CS+CL +F + EI R+LP
Sbjct: 85  LWQGLFNRSSRFSGL--DKKAIESLPFFRFSALKG-LKQGLECSVCLSKFEDVEILRLLP 144

Query: 161 KCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDD 194
           KC+H FH  CID+WL     CP+CR+ V ++DD
Sbjct: 145 KCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDD 174

[Close]

BLAST of Chy12G207920 vs. ExPASy Swiss-Prot
Match: Q9SJJ7 (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.9e-13
Identity = 53/185 (28.65%), Postives = 81/185 (43.78%), Query Frame = 0


Query: 11  LSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALAL 70
           L L+Q    E++  +       SP T  PPP PP  L   +  T+ +  +    +   ++
Sbjct: 10  LQLYQACGGEQELTKTVQNVTSSPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSV 69

Query: 71  MFLYFIFTCCERKYWNRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQY 130
            F +F  +       +        R+    +  S       S RR   S+AV S  +++Y
Sbjct: 70  YFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRY 129

Query: 131 GVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 190
                   +N DC ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS    
Sbjct: 130 TKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLF 189

Query: 191 QDDHL 196
            D  L
Sbjct: 190 SDKDL 192

[Close]

BLAST of Chy12G207920 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 76.6 bits (187), Expect = 6.4e-13
Identity = 59/178 (33.15%), Postives = 71/178 (39.89%), Query Frame = 0


Query: 38  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKY----WNRNGDIEG 97
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 98  GRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVG--------GGVIGKNADCSI 157
           GR   +    SP     D      SS A +   L +  +G         G      DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIK-KIGFFKLKKHQNGFKINGTDCSI 158

Query: 158 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDDHLPTATLQHH 204
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V     P    +HH
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQP----EHH 211

[Close]

BLAST of Chy12G207920 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 5.5e-12
Identity = 50/157 (31.85%), Postives = 76/157 (48.41%), Query Frame = 0


Query: 43  PPDELPVDVLSTLDLDFLNFAGLSAL--ALMFLYFIFT-CCERKYWNRNGD--IEGGRL- 102
           PP     D+++  +       G+ A+  AL F+  ++  CC     + +GD      RL 
Sbjct: 21  PPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLR 80

Query: 103 PTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEIC 162
             +  + S AS    S        A+ S  LF++    G   +  DCS+CL +F   EI 
Sbjct: 81  QGIFFNRSTASSDRFSGL---DKTAIESLPLFRFSALKG-SKQGLDCSVCLSKFESVEIL 140

Query: 163 RMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDD 194
           R+LPKC+H FH  CID+WL     CP+CR  V +++D
Sbjct: 141 RLLPKCRHAFHIGCIDQWLEQHATCPLCRDRVSMEED 173

[Close]

BLAST of Chy12G207920 vs. ExPASy TrEMBL
Match: A0A0A0M0H1 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYF+FTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGGRLPTVTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 192
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. ExPASy TrEMBL
Match: A0A5D3BEF0 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002260 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 3.8e-85
Identity = 152/166 (91.57%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YFIFTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGG+LP+VTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 192
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. ExPASy TrEMBL
Match: A0A1S3C5T1 (RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 3.8e-85
Identity = 152/166 (91.57%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YFIFTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGG+LP+VTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 192
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. ExPASy TrEMBL
Match: A0A5A7VKM2 (RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00570 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 6.5e-85
Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YFIFTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGGRLP+ TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 192
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 2.3e-58
Identity = 118/146 (80.82%), Postives = 128/146 (87.67%), Query Frame = 0


Query: 219 MGFLFVSVICIVVIIFLFRFYHYRLRLSQTRTLDIEERLHEHRTTQLFTQLQAEIVRQRQ 278
           MGFLFVSV+CI++IIFLF  YHYRLRL+QTRTLDIE+RLHEHRT QL  Q QAEI+RQRQ
Sbjct: 1   MGFLFVSVVCIILIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQRQ 60

Query: 279 TRT--NNRMEGEEPSSAVMTVAYTVKDED--GSYCGCAICVEEFEDEEICGVVESCGHCF 338
           T T  N+  EGEE SSAVMTVAY VKD +  GSYC CAIC+EEFEDEEICGVVESCGHCF
Sbjct: 61  TTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGHCF 120

Query: 339 HMDCMDQWLKIESRCPLCRCLVHAVS 361
           H DCMDQWL+IESRCPLCRCLVHAVS
Sbjct: 121 HEDCMDQWLRIESRCPLCRCLVHAVS 146

[Close]

BLAST of Chy12G207920 vs. NCBI nr
Match: KAE8653247.1 (hypothetical protein Csa_019633 [Cucumis sativus])

HSP 1 Score: 385 bits (990), Expect = 2.64e-130
Identity = 185/189 (97.88%), Postives = 187/189 (98.94%), Query Frame = 0


Query: 3   KNLIPFTTLSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNF 62
           KNLIPFTTLSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNF
Sbjct: 111 KNLIPFTTLSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNF 170

Query: 63  AGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAV 122
           AGLSALALMFLYF+FTCCERKYWNRNGDIEGGRLPTVTMDESPASET DS RRRPSSRAV
Sbjct: 171 AGLSALALMFLYFVFTCCERKYWNRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAV 230

Query: 123 ISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCP 182
           ISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCP
Sbjct: 231 ISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCP 290

Query: 183 VCRSPVYVQ 191
           VCRSPVYV+
Sbjct: 291 VCRSPVYVR 299

[Close]

BLAST of Chy12G207920 vs. NCBI nr
Match: XP_004151031.2 (RING-H2 finger protein ATL39 [Cucumis sativus])

HSP 1 Score: 342 bits (876), Expect = 4.99e-115
Identity = 162/166 (97.59%), Postives = 164/166 (98.80%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYF+FTCCERKYW
Sbjct: 1   MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFVFTCCERKYW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGGRLPTVTMDESPASET DS RRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPTVTMDESPASETEDSPRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 191
           CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. NCBI nr
Match: XP_008457570.2 (PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 322 bits (824), Expect = 3.91e-107
Identity = 152/166 (91.57%), Postives = 160/166 (96.39%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YFIFTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGG+LP+VTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGQLPSVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 191
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. NCBI nr
Match: KAA0067737.1 (RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa])

HSP 1 Score: 321 bits (822), Expect = 7.87e-107
Identity = 152/166 (91.57%), Postives = 159/166 (95.78%), Query Frame = 0


Query: 26  MNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYW 85
           MNSPTAVSPTTMP PPPPPD+LPV  LS LDLDFLN AGLSALA+MF+YFIFTC ERK+W
Sbjct: 1   MNSPTAVSPTTMPSPPPPPDDLPVGFLSALDLDFLNVAGLSALAMMFIYFIFTCYERKFW 60

Query: 86  NRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 145
           NRNGDIEGGRLP+ TMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI
Sbjct: 61  NRNGDIEGGRLPSETMDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSI 120

Query: 146 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQ 191
           CLDEFTEGEICRMLPKCKHVFHRFCID+WLPNERNCPVCRSPVYV+
Sbjct: 121 CLDEFTEGEICRMLPKCKHVFHRFCIDQWLPNERNCPVCRSPVYVR 166

[Close]

BLAST of Chy12G207920 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323 bits (828), Expect = 1.33e-105
Identity = 180/334 (53.89%), Postives = 224/334 (67.07%), Query Frame = 0


Query: 41  PPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLPTVT 100
           PPP  EL VDVLST+DLDFLNFAGL  LA+  +YFI+T  E KYWNR+ DIEGGR     
Sbjct: 3   PPPSPELSVDVLSTVDLDFLNFAGLFILAVTIMYFIYTYYEHKYWNRSRDIEGGR----- 62

Query: 101 MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 160
              +  +  G S   R  + AVISTRLFQYG  G ++G+NADCSICLDEF EGEICRMLP
Sbjct: 63  --SAATAAVGSSGEDRGGATAVISTRLFQYGERG-MVGQNADCSICLDEFVEGEICRMLP 122

Query: 161 KCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDDHLPTATLQHHNCYLPPSFMISNNQKMG 220
           KCKHVFHRFCID+WLPNER+CP+CRSPV+       +AT  +    + P+    +++ MG
Sbjct: 123 KCKHVFHRFCIDQWLPNERHCPLCRSPVHN------SATFLNPTAIMSPNM---SHELMG 182

Query: 221 FLFVSVICIVVI--IFLFRFYHYRLRLSQTRTLDIEERLHEHRTTQLFTQLQAEIVRQRQ 280
            + +S I I V   IF+FR YH  L   QTR LD+E+  H    T+LF + +AE +RQ+Q
Sbjct: 183 LIVLSAIAITVFLSIFMFRCYHNHLMQYQTRALDVEQTNH---ATRLFARFRAEFMRQQQ 242

Query: 281 T------RTNNRMEGEEPSSAVMTVAY----TVKDEDGSYCGCAICVEEFEDEEICGVVE 340
           +      R+N   E  E +S V  VAY    T ++ D   C CAIC+E F++EE+CGV++
Sbjct: 243 SIVAPPPRSNTAEE--EAASIVTKVAYKDIKTTEEADSDDC-CAICIEGFQEEELCGVLD 302

Query: 341 SCGHCFHMDCMDQWLKIESRCPLCRCLVHAVSHN 362
            CGHCFH  C+DQWL IESRCPLCRCLV  VS N
Sbjct: 303 RCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSEN 313

[Close]

BLAST of Chy12G207920 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 87.4 bits (215), Expect = 2.6e-17
Identity = 53/145 (36.55%), Postives = 75/145 (51.72%), Query Frame = 0


Query: 66  SALALMFLYFIFTCCERKYWNRNGDIEGGRLPTVTMDES-------PASETGDSS----R 125
           S +  +FL  +   C + Y+ R   I   R    +M+E+       PA    D      R
Sbjct: 131 SIITTLFLLTLLVLCFKFYYRRRRSITTSR--RWSMEEARNWDFDGPAPVIVDHPIWHIR 190

Query: 126 RRPSSRAVIST-RLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDR 185
               +  VIS+ ++ QY    GV+ +  DCS+CL EF E E  R+LPKCKH FH +CID 
Sbjct: 191 TIGLNPTVISSIKVCQYSKKDGVV-EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDT 250

Query: 186 WLPNERNCPVCRSPVY----VQDDH 195
           WL +  NCP+CR+P+     + DDH
Sbjct: 251 WLRSHTNCPLCRAPIVEANTMIDDH 272

[Close]

BLAST of Chy12G207920 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 3.7e-16
Identity = 56/179 (31.28%), Postives = 79/179 (44.13%), Query Frame = 0


Query: 38  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLP 97
           PPPPPPP    + +L    +  +    L    + FLY   T   R               
Sbjct: 27  PPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRI-----------SAA 86

Query: 98  TVTMDESPASETGDSSRRRPSS---------------RAVISTRLFQYGVGGGVIGKNAD 157
           +VT  ++   E  D +  R  S                A+ S  +  +  G G+I    +
Sbjct: 87  SVTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGII-DGTE 146

Query: 158 CSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV--QDDHLPTAT 200
           CS+CL+EF E E  R+LPKC H FH  CID WL + +NCP+CR+PV +  +  H  T T
Sbjct: 147 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETET 193

[Close]

BLAST of Chy12G207920 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 9.2e-15
Identity = 44/153 (28.76%), Postives = 72/153 (47.06%), Query Frame = 0


Query: 41  PPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKYWNRNGDIEGGRLPTVT 100
           PPPP+      L    L  +         L F+  ++  C         D +G R+    
Sbjct: 25  PPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDR 84

Query: 101 MDESPASETGDSSRRRPSSRAVISTRLFQYGVGGGVIGKNADCSICLDEFTEGEICRMLP 160
           + +   + +   S      +A+ S   F++    G + +  +CS+CL +F + EI R+LP
Sbjct: 85  LWQGLFNRSSRFSGL--DKKAIESLPFFRFSALKG-LKQGLECSVCLSKFEDVEILRLLP 144

Query: 161 KCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDD 194
           KC+H FH  CID+WL     CP+CR+ V ++DD
Sbjct: 145 KCRHAFHIGCIDQWLEQHATCPLCRNRVNIEDD 174

[Close]

BLAST of Chy12G207920 vs. TAIR 10
Match: AT2G27940.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.0 bits (188), Expect = 3.5e-14
Identity = 53/185 (28.65%), Postives = 81/185 (43.78%), Query Frame = 0


Query: 11  LSLFQKRITEKKRKQMNSPTAVSPTTMPPPPPPPDELPVDVLSTLDLDFLNFAGLSALAL 70
           L L+Q    E++  +       SP T  PPP PP  L   +  T+ +  +    +   ++
Sbjct: 10  LQLYQACGGEQELTKTVQNVTSSPLTPTPPPQPPSALDSTMALTIFILLVALFFMGFFSV 69

Query: 71  MFLYFIFTCCERKYWNRNGDIEGGRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQY 130
            F +F  +       +        R+    +  S       S RR   S+AV S  +++Y
Sbjct: 70  YFRHFADSSSSTVDISSMPRTRSSRMSPRRLSTSVVVSRPYSFRRGLDSQAVRSLPVYRY 129

Query: 131 GVGGGVIGKNADCSICLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYV 190
                   +N DC ICL +F EGE  +++P C HVFH  C+D WL +   CP+CRS    
Sbjct: 130 TKAAK--QRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLF 189

Query: 191 QDDHL 196
            D  L
Sbjct: 190 SDKDL 192

[Close]

BLAST of Chy12G207920 vs. TAIR 10
Match: AT4G17905.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 4.6e-14
Identity = 59/178 (33.15%), Postives = 71/178 (39.89%), Query Frame = 0


Query: 38  PPPPPPPDELPVDVLSTLDLDFLNFAGLSALALMFLYFIFTCCERKY----WNRNGDIEG 97
           PPP      L   V S  +L  L  A     A  FL   +     KY           E 
Sbjct: 39  PPPISYEQFLNDGVASNPNLSPLVIAIFGIFATAFLLAAYYTLVSKYCANDTTNEAASES 98

Query: 98  GRLPTVTMDESPASETGDSSRRRPSSRAVISTRLFQYGVG--------GGVIGKNADCSI 157
           GR   +    SP     D      SS A +   L +  +G         G      DCSI
Sbjct: 99  GRSDIILDVNSPERGDQDDPFALESSTAGLDDTLIK-KIGFFKLKKHQNGFKINGTDCSI 158

Query: 158 CLDEFTEGEICRMLPKCKHVFHRFCIDRWLPNERNCPVCRSPVYVQDDHLPTATLQHH 204
           CL EF E E  R+LPKC H FH  CIDRWL +  NCP+CR+ + V     P    +HH
Sbjct: 159 CLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQP----EHH 211

The following BLAST results are available for this feature:

BLAST of Chy12G207920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	5.3e-15	31.28	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9SL78	1.3e-13	28.76	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]
Q9SJJ7	4.9e-13	28.65	RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1	[more]
P0C041	6.4e-13	33.15	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]
Q5XF85	5.5e-12	31.85	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]

BLAST of Chy12G207920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0H1	3.6e-91	97.59	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G515990 PE...	[more]
A0A5D3BEF0	3.8e-85	91.57	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C5T1	3.8e-85	91.57	RING-H2 finger protein ATL39-like OS=Cucumis melo OX=3656 GN=LOC103497235 PE=4 S...	[more]
A0A5A7VKM2	6.5e-85	91.57	RING-H2 finger protein ATL39-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VMH1	2.3e-58	80.82	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Chy12G207920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653247.1	2.64e-130	97.88	hypothetical protein Csa_019633 [Cucumis sativus]	[more]
XP_004151031.2	4.99e-115	97.59	RING-H2 finger protein ATL39 [Cucumis sativus]	[more]
XP_008457570.2	3.91e-107	91.57	PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo] >TYJ97406.1 RING-H2 ...	[more]
KAA0067737.1	7.87e-107	91.57	RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]	[more]
KAG7019192.1	1.33e-105	53.89	E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Chy12G207920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G33565.1	2.6e-17	36.55	RING/U-box superfamily protein	[more]
AT5G10380.1	3.7e-16	31.28	RING/U-box superfamily protein	[more]
AT2G20030.1	9.2e-15	28.76	RING/U-box superfamily protein	[more]
AT2G27940.1	3.5e-14	28.65	RING/U-box superfamily protein	[more]
AT4G17905.1	4.6e-14	33.15	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 311..352 e-value: 0.007 score: 25.6 coord: 143..184 e-value: 1.0E-7 score: 41.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 142..185 e-value: 1.6E-12 score: 47.6 coord: 311..353 e-value: 6.5E-11 score: 42.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 311..353 score: 13.28594
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 143..185 score: 12.99088
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 106..189 e-value: 1.8E-19 score: 71.2 coord: 270..358 e-value: 2.7E-15 score: 57.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..43
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 65..191
None	No IPR available	PANTHER	PTHR45676:SF73	E3 UBIQUITIN-PROTEIN LIGASE RING1-RELATED	coord: 220..360
None	No IPR available	CDD	cd16448	RING-H2	coord: 311..353 e-value: 6.30435E-11 score: 55.1507
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 305..359
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 138..198
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 65..191
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 220..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207920.1	Chy12G207920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane