Chy12G207790 (gene) Cucumber (hystrix) v1

Overview
NameChy12G207790
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 2172762 .. 2174955 (+)
RNA-Seq ExpressionChy12G207790
SyntenyChy12G207790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCTCTTGGAGCGAAGATCACCAACAAAGGTAGATCATGTCATCACTATATATGCTTTTCAATTCATTTATAATCACTTTCTACAAACACAACTTTTGTAATTTTCTATATGTAGTAATTCTAATTTCTAAACAAAGTTTAAGCTTTTTCGTATACCTAATTGAACTAATTACTAGAGATAATATGGCAAGATAATACATTGAACTTTTTTAGAACAATAATTTGAGACGAGGAAATCTCATCTCTCATCTCTCATCTCTAAGATGGTTAATTACCACTATGAGTACTTAAAAGCTTGCTTTGGTTGTTAGATACATAGTTAAGAGAATAGATTAAAGATTATGGTACAAATAAGGGCAAATAAACCAAAAGCTTCAATGGGATCACCTGCATGTGTGTGTTATACATATTTTAATTGGAGTTTTTTTCTTTTCTCAATTGATATATATTTTAGGTTAAAATACTGTTTAAGTTTCATGTTAAGTTTTAGTTTTACTTTTAATAAATTTTGAATTTAATCAATTTTTACCGAAATTGATTAAAATACACGTTAAAATACCATTTTAGTCTATATATTTTAAAAAATATTGTTTTAATATACATACTTTGAAGTTTCTTCAATTTTAATTCATATAACTTTGATTGTCCAATATTAGTCTATTATTTTTAATATATAATAACATTTTTATTCTAGAAAATAAAATATGAGAATATTTTTTCAAAGTTGATAGTAGGAATATGCTAGATAAAAAGAGTTTTTTCTCTCTAGAAAATAAAAACAACAATAAAGTAACATTGAAGATTAAATTTAAGATATTTACAAATACAGTATCAAACGTATTTAAAACAATTGTTTAATATTAGAATTCAAAATTTTGATTAATATTTACCAAGTGCATATATGAAGACATGAGATATAATTTTGTTTTTACTGAGTCCACTTTAAATTTTTGTTAAACAACTGTTACTTGATTTGAGCTATATATGTGTATATATATATAAAGTTGAAATATAAAATTCAAATATAAAGAAATATAAAATTGTCAGGTTAGTTTCCGATATTGACGATATGGGTCAAATTGATATTTAACTCAAATCTTATTTAGGTGTTAATTGACAATATGGGTCATAACTCAAATCTTATTTAGGTGTTAACATGTCGAGTTTAGAAATCCAAAACTCGAAAGGCTAAAATCTAGACCTTATAAACCAAAAGTGTAAGTAAAAGAAAATAATTGAAAAAATTATGGAATAATTGTAATAACTTTTGATTTTTTTAAAAAGAAAATAAACATAATCGAATCAATTGTGTGAATCTATTTAGCCAAAGGGCAGAAGGAAGAGGAGAAGCCCTTTTAGAACAACAATAACAACAAACAAAAAACTTTGTAGATTATGTTTCATTCTTGTCCTAATAGTGAAAAAGGGTTGTAAAGTAGTTTATAAAACACTATTTTGTTGATTTTATGTAGAGCTAAGATCTGTTCATCATTGGAGCTCCAATTCAATGCATATCAATGGTGCATTAATTTCAAAGGTAAGTTCATCCTATTACTTTCTTTTATCCAACATTCTTTTTCTTCCCAAATTTAATTTTTCTTACTTCACGGTAACGGCGATATCGTCAAAATCTAGTTCCAAAAGCAAAAATGTTATGGACTTGAAACTTAATGTCCTAGAAAGAATACATCCTTACAAAGAAGAGTTTTTGTTTGAAATTGGTGTTTGAGAAACAAATATGACATTGATATTTTATAAATATTTTGGTTCATTATCATACGTGATTAAAAAAATTATTGTAAACGACAAGCTATTGAAATTTTCTTAGATTTTATAAATATTTTGATTAATTTTGCTACATTTAAAAACAAAACTTATAAAAACGCATTCTACCCATCAAACGAAACCTCAAAAGCAAGCAGTCATAGTATCCTAAAGATCAAGCTAGCTCTATCCATTACCATCCTAAACAACAACGGTTCGATTGTTAAAATTAGATTAGAACAAGGGTAAAAAAAGAAAAAAAGTTTCCTAATTTTTTTCTTATTTTTAATAAGATGCAAAGGACTCATACCTGAAACTGTGTTCATTGTTATGATGATTGAAAGCAGGCAATTGAGAAGAGAGTTTATAAAAAGCCATCAGTGCCAAATCCAAAGGGGAATCATCTGCCTCCATCAACCAAATGA

mRNA sequence

ATGGTGGCTCTTGGAGCGAAGATCACCAACAAAGAGCTAAGATCTGTTCATCATTGGAGCTCCAATTCAATGCATATCAATGGTGCATTAATTTCAAAGGCAATTGAGAAGAGAGTTTATAAAAAGCCATCAGTGCCAAATCCAAAGGGGAATCATCTGCCTCCATCAACCAAATGA

Coding sequence (CDS)

ATGGTGGCTCTTGGAGCGAAGATCACCAACAAAGAGCTAAGATCTGTTCATCATTGGAGCTCCAATTCAATGCATATCAATGGTGCATTAATTTCAAAGGCAATTGAGAAGAGAGTTTATAAAAAGCCATCAGTGCCAAATCCAAAGGGGAATCATCTGCCTCCATCAACCAAATGA

Protein sequence

MVALGAKITNKELRSVHHWSSNSMHINGALISKAIEKRVYKKPSVPNPKGNHLPPSTK*
Homology
[Close]
BLAST of Chy12G207790 vs. ExPASy TrEMBL
Match: A0A0A0LUT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G505900 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.5e-23
Identity = 55/57 (96.49%), Postives = 56/57 (98.25%), Query Frame = 0 

Query: 2  VALGAKITNKELRSVHHWSSNSMHINGALISKAIEKRVYKKPSVPNPKGNHLPPSTK 59
          VALGAKITNKELRSVHHWSSNSMHING L+SKAIEKRVYKKPSVPNPKGNHLPPSTK
Sbjct: 30 VALGAKITNKELRSVHHWSSNSMHINGELVSKAIEKRVYKKPSVPNPKGNHLPPSTK 86

[Close]
BLAST of Chy12G207790 vs. NCBI nr
Match: KAE8653239.1 (hypothetical protein Csa_019902 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.77e-12
Identity = 31/39 (79.49%), Postives = 33/39 (84.62%), Query Frame = 0 

Query: 2  VALGAKITNKELRSVHHWSSNSMHINGALISKAIEKRVY 40
          VALGAKITNKELRSVHHWSSNSMHING L+SK I    +
Sbjct: 30 VALGAKITNKELRSVHHWSSNSMHINGELVSKVISSYYF 68

The following BLAST results are available for this feature:
BLAST of Chy12G207790 vs.
Match NameE-valueIdentityDescription
BLAST of Chy12G207790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LUT61.5e-2396.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G505900 PE=4 SV=1[more]
BLAST of Chy12G207790 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653239.11.77e-1279.49hypothetical protein Csa_019902 [Cucumis sativus][more]
BLAST of Chy12G207790 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G207790.1Chy12G207790.1mRNA