Chy12G207570 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G207570
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Girdin-like
Location	chrH12: 1818500 .. 1819752 (-)
RNA-Seq Expression	Chy12G207570
Synteny	Chy12G207570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCAACATATCTAAGGAAGGAGTCTTGGGTGTCTTTCTTTTCAACAATGAGTTTTGAAAATGTCATATGGAAGGTTCAATGGTTGCCTTTGAAGGCAATGATTTATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATAGGGAGGTGTTAACTATATACCATTGTTAGTTTTGCATCAAGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGACTGACTTTTCATACGATCTTGAAGATTGTCAAGAAAAAAAATATCGAGCAGTATGTGCATGGAAGTTTGTGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACTAGTGAATACGAGGCATGGCAAGCAAACAGAAGGGAAAATGTAATAGATACCTTAAGGGAGGTAGTTGAAAGGGTAGAAGAGACAAGCTTTGAATAACCAAACCAGTGGGTTGAGAAGAGCATAAAATTAGAAGAGAAAAATCAATTGTTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGAGTGTTCATGTGACTTTTTTTGCAGAAAGAGCTCGAAAAGACCAAGAGTTTCTTAAGAAATCAAGCTAAGTTAGAAAAGAATTTTGAGGTGTTAGATAAAGAGATTAGGTGAATGAGTAAAACAAATAGAAGCTTGAAAATGAAAAAACAACATTACAGACAACAATAGAATTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGGATATTTTTTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACAGGAAGCACATATAGTAGATTTGGAAGCACACAATCATTCTCTACATCAAATAGTTGATAGCCTACATGTGAAGATGGTAGAGCACTCTGAAGAGTATAAAATACTGGAAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTGAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAGTTATTAAAGACAAGTTACATGCAAATGAAGGTTGATTATGATTTTGCGAAGGAAAGATTTCCTAGTTGAACGTGTAAATCAGACGATTGAATTTCTCAAAATAGTGTCTGAAGAGCAAATAGTTTTGCAAAATGGACAGCTGATTTAATGATTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTGAATAGGTTTTTTAAGATGATATGCAGAGGACTTGGACATTTTGGTCATTTTTATTAATTGTTTATTTTGCTATTAATGACAATGAG

mRNA sequence

ACCCAACATATCTAAGGAAGGAGTCTTGGGTGTCTTTCTTTTCAACAATGAGTTTTGAAAATGTCATATGGAAGGTTCAATGGTTGCCTTTGAAGGCAATGATTTATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATAGGGAGGTGTTAACTATATACCATTGTTAGTTTTGCATCAAGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGACTGACTTTTCATACGATCTTGAAGATTGTCAAGAAAAAAAATATCGAGCAGTATGTGCATGGAAGTTTGTGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACTAGTGAATACGAGGCATGGCAAGCAAACAGAAGGGAAAATGTAATAGATACCTTAAGGGAGGTAGTTGAAAGGGTAGAAGAGACAAGCTTTGAATAACCAAACCAGTGGGTTGAGAAGAGCATAAAATTAGAAGAGAAAAATCAATTGTTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGAGTGTTCATGTGACTTTTTTTGCAGAAAGAGCTCGAAAAGACCAAGAAATTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGGATATTTTTTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACAGGAAGCACATATAGTAGATTTGGAAGCACACAATCATTCTCTACATCAAATAGTTGATAGCCTACATGTGAAGATGGTAGAGCACTCTGAAGAGTATAAAATACTGGAAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTGAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAGTTATTAAAGACAAGTTACATGCAAATGAAGGTTGATTATGATTTTGCGAAGGAAAGATTTCCTAGTTGAACGTGTAAATCAGACGATTGAATTTCTCAAAATAGTGTCTGAAGAGCAAATAGTTTTGCAAAATGGACAGCTGATTTAATGATTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTGAATAGGTTTTTTAAGATGATATGCAGAGGACTTGGACATTTTGGTCATTTTTATTAATTGTTTATTTTGCTATTAATGACAATGAG

Coding sequence (CDS)

ACCCAACATATCTAAGGAAGGAGTCTTGGGTGTCTTTCTTTTCAACAATGAGTTTTGAAAATGTCATATGGAAGGTTCAATGGTTGCCTTTGAAGGCAATGATTTATAGATGTGGAGATTTTCATAGTGTGCCTTTGTTGGGACCATAGGGAGGTGTTAACTATATACCATTGTTAGTTTTGCATCAAGTGTGGCTCAAACAGTTTATACCACCAACTCATAATCTACAAGACTGACTTTTCATACGATCTTGAAGATTGTCAAGAAAAAAAATATCGAGCAGTATGTGCATGGAAGTTTGTGAGGAAGATAAAAGACAAAGGACACTATGAAGGAGTTACTAGTGAATACGAGGCATGGCAAGCAAACAGAAGGGAAAATGTAATAGATACCTTAAGGGAGGTAGTTGAAAGGGTAGAAGAGACAAGCTTTGAATAACCAAACCAGTGGGTTGAGAAGAGCATAAAATTAGAAGAGAAAAATCAATTGTTAGAGCAAGAGAATGAGAAACTTCGTAAAGAGACAAGTCAATGGAGTGTTCATGTGACTTTTTTTGCAGAAAGAGCTCGAAAAGACCAAGAAATTGCAAGATGAATATATTAAAGATTTAGAAAGTGGGAAGGGATATTTTTTCGAGCTTGTCAATGATTTGAATACATCAATTGGAAAACAGGAAGCACATATAGTAGATTTGGAAGCACACAATCATTCTCTACATCAAATAGTTGATAGCCTACATGTGAAGATGGTAGAGCACTCTGAAGAGTATAAAATACTGGAAAATTATGTTGATTCCTTACACTATCAACTTACTGCATTTGAAAATTCAAGTGAGAGGATAGTGCAAGAATACGAGTTATTAAAGACAAGTTACATGCAAATGAAGGTTGATTATGATTTTGCGAAGGAAAGATTTCCTAGTTGAACGTGTAAATCAGACGATTGAATTTCTCAAAATAGTGTCTGAAGAGCAAATAGTTTTGCAAAATGGACAGCTGATTTAATGATTAATTTTTTCTCAATGCAACCTCATGCAGATGATCTGAATAGGTTTTTTAAGATGATATGCAGAGGACTTGGACATTTTGGTCATTTTTATTAATTGTTTATTTTGCTATTAATGACAATGAG

Protein sequence

TQHI*GRSLGCLSFQQ*VLKMSYGRFNGCL*RQ*FIDVEIFIVCLCWDHREVLTIYHC*FCIKCGSNSLYHQLIIYKTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLREVVERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQEIAR*IY*RFRKWEGIFFRACQ*FEYINWKTGSTYSRFGSTQSFSTSNS**PTCEDGRAL*RV*NTGKLC*FLTLSTYCI*KFK*EDSARIRVIKDKLHANEG*L*FCEGKIS*LNV*IRRLNFSK*CLKSK*FCKMDS*FND*FFLNATSCR*SE*VF*DDMQRTWTFWSFLLIVYFAINDNE

Homology

[Close]

BLAST of Chy12G207570 vs. ExPASy TrEMBL
Match: A0A5D3CZ50 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-41
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 75  IYKTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLRE 134
           + ++DFSYD EDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  RE
Sbjct: 80  LQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISRE 139

Query: 135 VVERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQE 194
           VVER +ETSFE PNQW+EKSI+LEEKN+LLEQENEKLRKETSQW  H T+      K + 
Sbjct: 140 VVERGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKS 199

Query: 195 IAR 198
             +
Sbjct: 200 FLK 202

[Close]

BLAST of Chy12G207570 vs. ExPASy TrEMBL
Match: A0A5A7TNJ1 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 4.5e-41
Identity = 86/123 (69.92%), Postives = 100/123 (81.30%), Query Frame = 0


Query: 75  IYKTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLRE 134
           + ++DFSYD EDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  RE
Sbjct: 189 LQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISRE 248

Query: 135 VVERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQE 194
           VVER +ETSFE PNQW+EKSI+LEEKN+LLEQENEKLRKETSQW  H T+      K + 
Sbjct: 249 VVERGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKS 308

Query: 195 IAR 198
             +
Sbjct: 309 FLK 311

[Close]

BLAST of Chy12G207570 vs. ExPASy TrEMBL
Match: A0A5D3DK34 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.7e-41
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 75  IYKTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLRE 134
           + ++DFSYDLEDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  RE
Sbjct: 122 LQESDFSYDLEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISRE 181

Query: 135 VVERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQ 194
           VVER +ETSFE PNQW++KSI+LEEKN+LLEQENEKLRKETSQW  H  +      K++
Sbjct: 182 VVERGKETSFEQPNQWIKKSIELEEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNK 240

[Close]

BLAST of Chy12G207570 vs. ExPASy TrEMBL
Match: A0A1S4DX26 (girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.7e-41
Identity = 85/119 (71.43%), Postives = 100/119 (84.03%), Query Frame = 0


Query: 75  IYKTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLRE 134
           + ++DFSYDLEDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  RE
Sbjct: 48  LQESDFSYDLEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISRE 107

Query: 135 VVERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQ 194
           VVER +ETSFE PNQW++KSI+LEEKN+LLEQENEKLRKETSQW  H  +      K++
Sbjct: 108 VVERGKETSFEQPNQWIKKSIELEEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNK 166

[Close]

BLAST of Chy12G207570 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-40
Identity = 85/123 (69.11%), Postives = 99/123 (80.49%), Query Frame = 0


Query: 75  IYKTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLRE 134
           + ++DFSYD EDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  RE
Sbjct: 345 LQESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISRE 404

Query: 135 VVERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQE 194
           VVE  +ETSFE PNQW+EKSI+LEEKN+LLEQENEKLRKETSQW  H T+      K + 
Sbjct: 405 VVESGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKS 464

Query: 195 IAR 198
             +
Sbjct: 465 FLK 467

[Close]

BLAST of Chy12G207570 vs. NCBI nr
Match: TYK16558.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 7.57e-49
Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 77  KTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLREVV 136
           ++DFSYD EDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  REVV
Sbjct: 82  ESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVV 141

Query: 137 ERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQEIA 196
           ER +ETSFE PNQW+EKSI+LEEKN+LLEQENEKLRKETSQW  H T+      K +   
Sbjct: 142 ERGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFL 201

[Close]

BLAST of Chy12G207570 vs. NCBI nr
Match: TYK21787.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 3.52e-48
Identity = 83/108 (76.85%), Postives = 98/108 (90.74%), Query Frame = 0


Query: 77  KTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLREVV 136
           ++DFSYDLEDCQ +K +AVCAWK +RKIKDKGHYEGVT+ YEAWQANR +N+I+  REVV
Sbjct: 92  ESDFSYDLEDCQGQKRQAVCAWKSIRKIKDKGHYEGVTNGYEAWQANRMKNIINISREVV 151

Query: 137 ERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTF 184
           E+ +ETSFE PNQW+EKSI+LEEKN+LLEQENEKLRKETSQW VHVT+
Sbjct: 152 EKGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMVHVTY 199

[Close]

BLAST of Chy12G207570 vs. NCBI nr
Match: KAA0044912.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 1.50e-47
Identity = 86/121 (71.07%), Postives = 99/121 (81.82%), Query Frame = 0


Query: 77  KTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLREVV 136
           ++DFSYD EDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  REVV
Sbjct: 191 ESDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVV 250

Query: 137 ERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQEIA 196
           ER +ETSFE PNQW+EKSI+LEEKN+LLEQENEKLRKETSQW  H T+      K +   
Sbjct: 251 ERGKETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFL 310

[Close]

BLAST of Chy12G207570 vs. NCBI nr
Match: XP_016900531.1 (PREDICTED: girdin-like [Cucumis melo])

HSP 1 Score: 175 bits (443), Expect = 4.69e-47
Identity = 85/117 (72.65%), Postives = 99/117 (84.62%), Query Frame = 0


Query: 77  KTDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLREVV 136
           ++DFSYDLEDCQ KK +AVCAWK +RKIKDKGHYEGVTS YEAWQANRR+N+ID  REVV
Sbjct: 50  ESDFSYDLEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVV 109

Query: 137 ERVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQ 193
           ER +ETSFE PNQW++KSI+LEEKN+LLEQENEKLRKETSQW  H  +      K++
Sbjct: 110 ERGKETSFEQPNQWIKKSIELEEKNRLLEQENEKLRKETSQWMDHAAYLQNELEKNK 166

[Close]

BLAST of Chy12G207570 vs. NCBI nr
Match: XP_031739496.1 (uncharacterized protein LOC116403043 [Cucumis sativus])

HSP 1 Score: 172 bits (436), Expect = 1.66e-46
Identity = 86/120 (71.67%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 78  TDFSYDLEDCQEKKYRAVCAWKFVRKIKDKGHYEGVTSEYEAWQANRRENVIDTLREVVE 137
           +DF+YD EDCQ KK+RAVCAWK VRKIKDKGHYEGVTS YEAWQ NRR+NVI TL++VVE
Sbjct: 198 SDFAYDHEDCQRKKHRAVCAWKSVRKIKDKGHYEGVTSGYEAWQTNRRKNVIYTLKDVVE 257

Query: 138 RVEETSFE*PNQWVEKSIKLEEKNQLLEQENEKLRKETSQWSVHVTFFAERARKDQEIAR 197
           RVEETS E P+QWVEK  KLEEKN+LLEQENEKL+KETSQW  H TF  +   K +   +
Sbjct: 258 RVEETSSEQPDQWVEKITKLEEKNRLLEQENEKLQKETSQWIDHATFLQKELEKTKSFLK 317

The following BLAST results are available for this feature:

BLAST of Chy12G207570 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G207570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZ50	4.5e-41	69.92	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003770 PE...	[more]
A0A5A7TNJ1	4.5e-41	69.92	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002070 PE...	[more]
A0A5D3DK34	7.7e-41	71.43	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00110 PE...	[more]
A0A1S4DX26	7.7e-41	71.43	girdin-like OS=Cucumis melo OX=3656 GN=LOC107990936 PE=4 SV=1	[more]
A0A5A7T5S7	2.2e-40	69.11	Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=...	[more]

BLAST of Chy12G207570 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16558.1	7.57e-49	71.07	girdin-like [Cucumis melo var. makuwa]	[more]
TYK21787.1	3.52e-48	76.85	girdin-like [Cucumis melo var. makuwa]	[more]
KAA0044912.1	1.50e-47	71.07	girdin-like [Cucumis melo var. makuwa]	[more]
XP_016900531.1	4.69e-47	72.65	PREDICTED: girdin-like [Cucumis melo]	[more]
XP_031739496.1	1.66e-46	71.67	uncharacterized protein LOC116403043 [Cucumis sativus]	[more]

BLAST of Chy12G207570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 148..171
None	No IPR available	COILS	Coil	Coil	coord: 117..137

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G207570.1	Chy12G207570.1	mRNA