Chy12G207110 (gene) Cucumber (hystrix) v1

Overview
NameChy12G207110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH12: 1241994 .. 1242239 (-)
RNA-Seq ExpressionChy12G207110
SyntenyChy12G207110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCTTCTTCCACAGCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCAGCGCTAGAACCGTCGATGTTCCTCCGCCTACTCGCGCACCACTCCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

mRNA sequence

ATGGCAGCAGCTTCTTCCACAGCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCAGCGCTAGAACCGTCGATGTTCCTCCGCCTACTCGCGCACCACTCCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

Coding sequence (CDS)

ATGGCAGCAGCTTCTTCCACAGCTTCAAAGGGGAAGATCTCTACCCTTCCACCAAAACGCGGTCGTATCAAAGCTCAAATTTTTGAGAGCCTTGTTAATTCCGCAGCTTTGGCGGCTTTCATGGCTGAAGAAATACTCTGCAGACTCATCCGAGACCTCGTCACCAGCGCTAGAACCGTCGATGTTCCTCCGCCTACTCGCGCACCACTCCCACCTCCTCTTATTTTTCATGGAAGCTCCTTTTAA

Protein sequence

MAAASSTASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTVDVPPPTRAPLPPPLIFHGSSF*
Homology
BLAST of Chy12G207110 vs. ExPASy TrEMBL
Match: A0A0A0LS06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.4e-27
Identity = 72/81 (88.89%), Postives = 72/81 (88.89%), Query Frame = 0

Query: 1  MAAASSTASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAASSTASKGKI TLPPKRGRIKAQI ESLVNSAALA FMAEEILCR IRDLVTSARTV
Sbjct: 1  MAAASSTASKGKIFTLPPKRGRIKAQILESLVNSAALATFMAEEILCRPIRDLVTSARTV 60

Query: 61 DVPPPTRAPLPPPLIFHGSSF 82
          D PPP  AP PPPLIFHG SF
Sbjct: 61 DAPPPYPAP-PPPLIFHGVSF 80

BLAST of Chy12G207110 vs. NCBI nr
Match: KAE8653222.1 (hypothetical protein Csa_019661, partial [Cucumis sativus])

HSP 1 Score: 140 bits (354), Expect = 1.10e-41
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0

Query: 4  ASSTASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTVDVP 63
          ASST+SKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVT ARTVDVP
Sbjct: 1  ASSTSSKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTGARTVDVP 60

Query: 64 PPTRAPLPPPLIFHGSSF 81
          PPT A  PPPLIFHGSSF
Sbjct: 61 PPTPARPPPPLIFHGSSF 78

BLAST of Chy12G207110 vs. NCBI nr
Match: KAG6583309.1 (hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.07e-16
Identity = 49/81 (60.49%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 1  MAAASSTASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAA ST  K  IS+LPP+RGRIKA+IFESLVNSAAL       IL ++IR LV+ AR  
Sbjct: 1  MAAARSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGARVH 60

Query: 61 DVPPPTR-APLPPPLIFHGSS 80
           VP P+  APLPPPL + G S
Sbjct: 61 AVPLPSPVAPLPPPLRYDGGS 74

BLAST of Chy12G207110 vs. NCBI nr
Match: KAG6583308.1 (hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.6 bits (179), Expect = 5.04e-15
Identity = 47/81 (58.02%), Postives = 56/81 (69.14%), Query Frame = 0

Query: 1  MAAASSTASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTV 60
          MAAA ST  K  IS+LPP+RGRIKA+IFESLVNSAAL       IL ++IR LV+ A+  
Sbjct: 1  MAAAPSTGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILFKVIRYLVSGAQIR 60

Query: 61 DVPPPT-RAPLPPPLIFHGSS 80
           V PP+  AP PPPL + G S
Sbjct: 61 AVLPPSPMAPPPPPLRYDGGS 74

BLAST of Chy12G207110 vs. NCBI nr
Match: KAG6583472.1 (hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.02e-14
Identity = 48/82 (58.54%), Postives = 56/82 (68.29%), Query Frame = 0

Query: 1  MAAASSTASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSA--R 60
          MAAA S   K  IS+LPP+RGRIKA+IFESLVNSAAL       IL ++IR LV+SA  R
Sbjct: 1  MAAAPSMGLKANISSLPPRRGRIKARIFESLVNSAAL-------ILLKVIRYLVSSAQIR 60

Query: 61 TVDVPPPTRAPLPPPLIFHGSS 80
           V +P P  AP PPPL + G S
Sbjct: 61 AVPLPSPV-APPPPPLRYDGGS 74

BLAST of Chy12G207110 vs. NCBI nr
Match: RDX96567.1 (hypothetical protein CR513_20760, partial [Mucuna pruriens])

HSP 1 Score: 49.3 bits (116), Expect = 1.94e-05
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = 0

Query: 6  STASKGKISTLPPKRGRIKAQIFESLVNSAALAAFMAEEILCRLIRDLVTSARTVDVPPP 65
          S  S+ K ++LPPKRG+IKAQ+F SLVNS A A     E L  +I +   S      PPP
Sbjct: 8  SNTSERKKASLPPKRGQIKAQVFNSLVNSVASAISKTRESLRNVIANGGGSGSASSTPPP 67

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LS061.4e-2788.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077160 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8653222.11.10e-4193.59hypothetical protein Csa_019661, partial [Cucumis sativus][more]
KAG6583309.11.07e-1660.49hypothetical protein SDJN03_19241, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583308.15.04e-1558.02hypothetical protein SDJN03_19240, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6583472.11.02e-1458.54hypothetical protein SDJN03_19404, partial [Cucurbita argyrosperma subsp. sorori... [more]
RDX96567.11.94e-0545.90hypothetical protein CR513_20760, partial [Mucuna pruriens][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy12G207110.1Chy12G207110.1mRNA