Chy12G206720 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G206720
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L11
Location	chrH12: 635210 .. 636480 (-)
RNA-Seq Expression	Chy12G206720
Synteny	Chy12G206720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGAGATATTAAAGTCCAGAAGCTGGTTCTTAACATCTCCGTCGGTGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTTTCAACCCTTCTCCTTTAACGCACTGGTTTTCCCCCTTTATAGCTTCACCCCATTTGCATCCCGATTGATTTCTTATATCGGTTATTTATTCGTAGGTGCTTGAACAACTCAGTGGCCAATCCCCCGTCTTCTCCAAAGGTGGGTATTTGATTTCGATTTTGTGTTGTTTTTTTTAAAAAGACTGTTTTTACTCTTAGATCTGTTTTCTAATTTTCGTTACTGGGAATAAAACAGCCCGTTACACTGTTCGGTCTTTTGGGATCAGGCGTAACGAGAAGATCGCCTGCTACGTCACTGTGAGGGGCGAAAAGGCAATGCAACTTCTTGAAAGTGGTTTGAAGGTTAAGGAATACGAACTCTTGCGCAGGAACTTCAGTGATACAGGCTGCTTTGGTTTTGGTATTCAGGAGCATATTGATCTTGGAATCAAGTTAGTTTTCAATATTCTTGTTTCTTTCTTAATACTTGTGTGTTTTTTTTAGCTAAGGGTCTTTGTCCTCGCTTATGTCTTGCTGGTTCATTTGGAACCTTATGGCCTACATTAAAACTATTTGAGAACAACCATTCTTTAATTACAGGAACTCAGCTGCCCGGATTAGAAATCTATCTTTTGCCATAATCTGAAGTAGCAGTGTGACATTCGTGGTTTAAGCGTAGCAAAATGTTTTGAAAAAACTTGTCTTAGAAGTTAGAATAGAAGCTGGAAACGTTTGAATTCACATTGTAATTTGTTTGTTGTGACATAGAAACATAGTTTACACATGAATGGACTACACCTATGGAATTGAGACTCGAGAAGTTTAGACCTTTGATTATATTTGGTCAGAAGTTTTCCAATCGGTAAATGCTGTTTTGGCTGAAATTTATAAGCAAAGTAAAATCCTGATGGGTCTAGTTCTCCTGGCTGGGATAGGTTACGTATATGCATTATTGAGCTTCATGGAGGCTGGTGTTTGACAAATAATTGCTTTCTTTTCTCCATCTTTAGGTATGACCCTTCAACTGGTATATATGGTATGGACTTCTATGTTGTTCTAGAACGTCCAGGCTATCGTGTTGGTCGTCGACGTCGATGCAAGTCAAGTGTTGGAATTCAACATAGGGTCACCAAAGAGGATGCAATGAAGTGGTTTCAAGTTAAGTATGAAGGCGTCATCCTTAATAAGTCTCAGAACATTACAGGCTAG

mRNA sequence

ATGCGAGATATTAAAGTCCAGAAGCTGGTTCTTAACATCTCCGTCGGTGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTGCTTGAACAACTCAGTGGCCAATCCCCCGTCTTCTCCAAAGCCCGTTACACTGTTCGGTCTTTTGGGATCAGGCGTAACGAGAAGATCGCCTGCTACGTCACTGTGAGGGGCGAAAAGGCAATGCAACTTCTTGAAAGTGGTTTGAAGGTTAAGGAATACGAACTCTTGCGCAGGAACTTCAGTGATACAGGCTGCTTTGGTTTTGGTATTCAGGAGCATATTGATCTTGGAATCAAGTATGACCCTTCAACTGGTATATATGGTATGGACTTCTATGTTGTTCTAGAACGTCCAGGCTATCGTGTTGGTCGTCGACGTCGATGCAAGTCAAGTGTTGGAATTCAACATAGGGTCACCAAAGAGGATGCAATGAAGTGGTTTCAAGTTAAGTATGAAGGCGTCATCCTTAATAAGTCTCAGAACATTACAGGCTAG

Coding sequence (CDS)

ATGCGAGATATTAAAGTCCAGAAGCTGGTTCTTAACATCTCCGTCGGTGAAAGCGGCGATCGTCTCACCAGAGCCGCCAAGGTGCTTGAACAACTCAGTGGCCAATCCCCCGTCTTCTCCAAAGCCCGTTACACTGTTCGGTCTTTTGGGATCAGGCGTAACGAGAAGATCGCCTGCTACGTCACTGTGAGGGGCGAAAAGGCAATGCAACTTCTTGAAAGTGGTTTGAAGGTTAAGGAATACGAACTCTTGCGCAGGAACTTCAGTGATACAGGCTGCTTTGGTTTTGGTATTCAGGAGCATATTGATCTTGGAATCAAGTATGACCCTTCAACTGGTATATATGGTATGGACTTCTATGTTGTTCTAGAACGTCCAGGCTATCGTGTTGGTCGTCGACGTCGATGCAAGTCAAGTGTTGGAATTCAACATAGGGTCACCAAAGAGGATGCAATGAAGTGGTTTCAAGTTAAGTATGAAGGCGTCATCCTTAATAAGTCTCAGAACATTACAGGCTAG

Protein sequence

MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG*

Homology

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BLAST of Chy12G206720 vs. ExPASy Swiss-Prot
Match: P42795 (60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.5e-92
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. ExPASy Swiss-Prot
Match: P42794 (60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.5e-92
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. ExPASy Swiss-Prot
Match: P46287 (60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 5.2e-90
Identity = 162/170 (95.29%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRG+KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDF+
Sbjct: 71  VTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFF 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI 171
           VVLERPGYRVGRRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQ I
Sbjct: 131 VVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQAI 180

[Close]

BLAST of Chy12G206720 vs. ExPASy Swiss-Prot
Match: A2YDY2 (60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 SV=2)

HSP 1 Score: 327.4 bits (838), Expect = 9.7e-89
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 169
           VVLER GYRV RRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct: 131 VVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178

[Close]

BLAST of Chy12G206720 vs. ExPASy Swiss-Prot
Match: Q0DK10 (60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 9.7e-89
Identity = 161/168 (95.83%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MR+IKVQKLVLNISVGESGDRLTRA+KVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFS+TGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQ 169
           VVLER GYRV RRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNK+Q
Sbjct: 131 VVLERAGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKAQ 178

[Close]

BLAST of Chy12G206720 vs. ExPASy TrEMBL
Match: A0A5A7UMH0 (60S ribosomal protein L11-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002400 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. ExPASy TrEMBL
Match: A0A0A0LUL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470310 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. ExPASy TrEMBL
Match: A0A1S3B809 (60S ribosomal protein L11-1 OS=Cucumis melo OX=3656 GN=LOC103487028 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. ExPASy TrEMBL
Match: A0A200R2R8 (Ribosomal protein L5 OS=Macleaya cordata OX=56857 GN=BVC80_9043g45 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 9.8e-92
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. ExPASy TrEMBL
Match: A0A6J1IU83 (60S ribosomal protein L11-1 OS=Cucurbita maxima OX=3661 GN=LOC111478629 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.7e-91
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIT 172
           VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI+
Sbjct: 131 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIS 181

[Close]

BLAST of Chy12G206720 vs. NCBI nr
Match: XP_008443441.1 (PREDICTED: 60S ribosomal protein L11-1 [Cucumis melo] >XP_011657618.1 60S ribosomal protein L11-1 [Cucumis sativus] >XP_038893913.1 60S ribosomal protein L11-1 [Benincasa hispida] >KAA0057052.1 60S ribosomal protein L11-1-like [Cucumis melo var. makuwa] >KGN65615.1 hypothetical protein Csa_019905 [Cucumis sativus])

HSP 1 Score: 348 bits (892), Expect = 1.24e-120
Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 172
           VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. NCBI nr
Match: OVA17001.1 (Ribosomal protein L5 [Macleaya cordata])

HSP 1 Score: 345 bits (884), Expect = 2.06e-119
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 172
           VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. NCBI nr
Match: XP_026405064.1 (60S ribosomal protein L11-1-like [Papaver somniferum])

HSP 1 Score: 345 bits (884), Expect = 2.06e-119
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQAPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 172
           VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. NCBI nr
Match: XP_010052835.1 (60S ribosomal protein L11-1-like [Eucalyptus grandis])

HSP 1 Score: 344 bits (883), Expect = 2.92e-119
Identity = 170/172 (98.84%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MR+IKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 172
           VVLERPGYRVGRRRRCKS VGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. NCBI nr
Match: XP_022926136.1 (60S ribosomal protein L11-1 [Cucurbita moschata] >XP_022978768.1 60S ribosomal protein L11-1 [Cucurbita maxima] >KAG6581365.1 60S ribosomal protein L11-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 344 bits (882), Expect = 4.01e-119
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIT 171
           VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNI+
Sbjct: 131 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNIS 181

[Close]

BLAST of Chy12G206720 vs. TAIR 10
Match: AT2G42740.1 (ribosomal protein large subunit 16A )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. TAIR 10
Match: AT3G58700.1 (Ribosomal L5P family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. TAIR 10
Match: AT4G18730.1 (ribosomal protein L16B )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 182

[Close]

BLAST of Chy12G206720 vs. TAIR 10
Match: AT5G45775.1 (Ribosomal L5P family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 1   MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 121 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 172

[Close]

BLAST of Chy12G206720 vs. TAIR 10
Match: AT5G45775.2 (Ribosomal L5P family protein )

HSP 1 Score: 340.1 bits (871), Expect = 1.0e-93
Identity = 166/172 (96.51%), Postives = 170/172 (98.84%), Query Frame = 0


Query: 1   MRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACY 60
           MRDIKVQKLVLNISVGESGDRLTRA+KVLEQLSGQ+PVFSKARYTVRSFGIRRNEKIACY
Sbjct: 11  MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 70

Query: 61  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 120
           VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY
Sbjct: 71  VTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFY 130

Query: 121 VVLERPGYRVGRRRRCKSSVGIQHRVTKEDAMKWFQVKYEGVILNKSQNITG 173
           VVLERPGYRV RRRRCK+ VGIQHRVTK+DAMKWFQVKYEGVILNKSQNITG
Sbjct: 131 VVLERPGYRVARRRRCKTRVGIQHRVTKDDAMKWFQVKYEGVILNKSQNITG 182

The following BLAST results are available for this feature:

BLAST of Chy12G206720 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42795	1.5e-92	96.51	60S ribosomal protein L11-1 OS=Arabidopsis thaliana OX=3702 GN=RPL11A PE=2 SV=2	[more]
P42794	1.5e-92	96.51	60S ribosomal protein L11-2 OS=Arabidopsis thaliana OX=3702 GN=RPL11B PE=2 SV=2	[more]
P46287	5.2e-90	95.29	60S ribosomal protein L11 OS=Medicago sativa OX=3879 GN=RPL11 PE=2 SV=1	[more]
A2YDY2	9.7e-89	95.83	60S ribosomal protein L11 OS=Oryza sativa subsp. indica OX=39946 GN=RPL11 PE=2 S...	[more]
Q0DK10	9.7e-89	95.83	60S ribosomal protein L11 OS=Oryza sativa subsp. japonica OX=39947 GN=RPL11 PE=2...	[more]

BLAST of Chy12G206720 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMH0	1.2e-92	100.00	60S ribosomal protein L11-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A0A0LUL5	1.2e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470310 PE=3 SV=1	[more]
A0A1S3B809	1.2e-92	100.00	60S ribosomal protein L11-1 OS=Cucumis melo OX=3656 GN=LOC103487028 PE=3 SV=1	[more]
A0A200R2R8	9.8e-92	98.84	Ribosomal protein L5 OS=Macleaya cordata OX=56857 GN=BVC80_9043g45 PE=3 SV=1	[more]
A0A6J1IU83	1.7e-91	99.42	60S ribosomal protein L11-1 OS=Cucurbita maxima OX=3661 GN=LOC111478629 PE=3 SV=...	[more]

BLAST of Chy12G206720 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443441.1	1.24e-120	100.00	PREDICTED: 60S ribosomal protein L11-1 [Cucumis melo] >XP_011657618.1 60S riboso...	[more]
OVA17001.1	2.06e-119	98.84	Ribosomal protein L5 [Macleaya cordata]	[more]
XP_026405064.1	2.06e-119	98.84	60S ribosomal protein L11-1-like [Papaver somniferum]	[more]
XP_010052835.1	2.92e-119	98.84	60S ribosomal protein L11-1-like [Eucalyptus grandis]	[more]
XP_022926136.1	4.01e-119	99.42	60S ribosomal protein L11-1 [Cucurbita moschata] >XP_022978768.1 60S ribosomal p...	[more]

BLAST of Chy12G206720 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42740.1	1.0e-93	96.51	ribosomal protein large subunit 16A	[more]
AT3G58700.1	1.0e-93	96.51	Ribosomal L5P family protein	[more]
AT4G18730.1	1.0e-93	96.51	ribosomal protein L16B	[more]
AT5G45775.1	1.0e-93	96.51	Ribosomal L5P family protein	[more]
AT5G45775.2	1.0e-93	96.51	Ribosomal L5P family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031310	Ribosomal protein L5, N-terminal	PFAM	PF00281	Ribosomal_L5	coord: 1..52 e-value: 3.6E-19 score: 68.8
IPR022803	Ribosomal protein L5 domain superfamily	GENE3D	3.30.1440.10		coord: 1..167 e-value: 3.9E-70 score: 237.0
IPR022803	Ribosomal protein L5 domain superfamily	SUPERFAMILY	55282	RL5-like	coord: 1..163
IPR031309	Ribosomal protein L5, C-terminal	PFAM	PF00673	Ribosomal_L5_C	coord: 56..154 e-value: 5.3E-21 score: 74.6
IPR002132	Ribosomal protein L5	PIRSF	PIRSF002161	RPL5p_RPL5a_RPL11e_RPL5o	coord: 1..162 e-value: 1.2E-40 score: 136.9
IPR002132	Ribosomal protein L5	PANTHER	PTHR11994	60S RIBOSOMAL PROTEIN L11-RELATED	coord: 1..171
None	No IPR available	PANTHER	PTHR11994:SF31	60S RIBOSOMAL PROTEIN L11-1	coord: 1..171
IPR020929	Ribosomal protein L5, conserved site	PROSITE	PS00358	RIBOSOMAL_L5	coord: 29..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G206720.1	Chy12G206720.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome