Chy12G206050 (gene) Cucumber (hystrix) v1

Overview


Name	Chy12G206050
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	40S ribosomal protein S14
Location	chrH12: 74210 .. 76189 (+)
RNA-Seq Expression	Chy12G206050
Synteny	Chy12G206050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCAAATTCTCGTAGAGCTCCACACAGGGGAAGCTACTTCGGCCATCTTTTTCGTAAACATGGTGAGTACATCTAATCTTTCTGGTTGGCTTCTACCATTGCAGTTCCTGTCGGCTTTTTCTGCCCCATGCCAATGATAGTCGTTCAAGTATGGATTTGTGAAGAAGTGTTTGAATATCTTTTTTTCAACACTTCGAATGTCGTCATCAAGGTTCTTCCATCTCTGTTTCAAGATTTTGCTGCTATTAGTGTAGTATGAAATCTGGAGTTTAATAGGGCGTATAATCATATGAAACAAGTGATTAATACTCATTATCCAGGATATTAGGTTATTTGGTATGCTCTCTGCCATGTTTTGAAATTTAGGGTTTTAGTCAGTGGTGTGATATAGTAGATTGGGAGTGGAGTGGATTCGAGCTTTTAAGCTGTGTGGTTTGGAGTCTACTGTTTATAACAAGTACCTCTACTTTGTTTGCTCAGCAGAGGCAGAGATGACCTATATTTATTTATGGGTTTTTTTTCATTTGTGTTTTGTGCTTTATGATTCTTCTCAACGTCCTTTGGCTACTTAGTGATTGGCTTTATGTTTCAGCATGAAAATCTGTTGAATGTAGGAATCTTTACTTTGCTTTTGTTTTTGTTGGATTCCATAGTCTGGTTCAAGGAGGAAGACCAGGGAGCCTAAGGAAGAGACTGTGACTCTTGGTCCTGCAGTGAGGGAAGGCGAGCATGTGTTCGGTGTGGCTCACATTTTTGCCTCATTTAACGATACATTTATTGTAAGTGGAAAAATTTATATAATTTTGGTTTCTCGTTCGGTAACAGAATGATGACTTTGTTGTTTCAACAACAGCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGAAACAATTGAATAGTTTCTTCCTTCTTTGAATTTGGGATCTCTCTATTTCTTAGTTTTTGTTCCTTCAGTTGTGTAATTTCATTGATTGGTCCATATATGTAAGTAAATTTAATACAAGCTGTAGAGAATCATTAAAATTCATTGTCTAGAGTTGATGCGTATGAAAACCTTCTGCATTTATGAATATGATGTATGGTATTAGATTGTTTGTAATTTCCTGTTAAATCTCTATACTCACTTCAGAGCTCTCCAAAAGAAGTGTTATGCTTTATTTCTTCTTCTTCTTCTTCTTATTTATTTATATTATATTATTTTTCATGTGGAGTTTGGAAAGTTTAATTATTTTGATGAACGCAGGTGGTATGAAGGTGAAAGCTGATAGGGATGAGTCCTCCCCCTACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAAAGATGCAAGGTTCCATCCTCTTTTAATATTGTTTCTTAATCACTCTTTACCCTCATTTTATGGATTGTAATCTTTGTACTTGGTCGAGTCTAATAATTTCCTCTGGAACTTATTTCATCCCATTTTCTTATTTCATCTGTACGGTTTGTCAACTTTCTCACTCCGAACAACATGACATGTGTGTGGCATGATGTCGTTCACGAAACAGGAACTCGGTATTACTGCTCTTCATATTAAACTGCGTGCTACCGGAGGAAACAAGACCAAAACACCTGGTCCAGGTGCCCAATCTGCACTACGTGCTCTTGCTCGTTCTGGGATGAGGATTGGACGCATAGGTGAATCCTTTGTCCCTCTACATTGATGAATTCAAATCTAAGTACACGAATGCTGTACATTCTCACAACTTTTCATAATACTTTATTAGCTGTTAATCACTCATATGCGTTTTTTATATTTTCTAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCCGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAAGCTTACTCTGGGATTCCTACTATTATGGCTGTGTCGATGGTTTCTCTGTGGTTCTGATGCTCCTTAAGCTTTGCGGCCTTAGTTTTTCAGAACTCCAACTTGGTTTTTGA

mRNA sequence

CGGCAAATTCTCGTAGAGCTCCACACAGGGGAAGCTACTTCGGCCATCTTTTTCGTAAACATGTCTGGTTCAAGGAGGAAGACCAGGGAGCCTAAGGAAGAGACTGTGACTCTTGGTCCTGCAGTGAGGGAAGGCGAGCATGTGTTCGGTGTGGCTCACATTTTTGCCTCATTTAACGATACATTTATTCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGGTATGAAGGTGAAAGCTGATAGGGATGAGTCCTCCCCCTACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAAAGATGCAAGGAACTCGGTATTACTGCTCTTCATATTAAACTGCGTGCTACCGGAGGAAACAAGACCAAAACACCTGGTCCAGGTGCCCAATCTGCACTACGTGCTCTTGCTCGTTCTGGGATGAGGATTGGACGCATAGCTGTTAATCACTCATATGCGTTTTTTATATTTTCTAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCCGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAAGCTTACTCTGGGATTCCTACTATTATGGCTGTGTCGATGGTTTCTCTGTGGTTCTGATGCTCCTTAAGCTTTGCGGCCTTAGTTTTTCAGAACTCCAACTTGGTTTTTGA

Coding sequence (CDS)

CGGCAAATTCTCGTAGAGCTCCACACAGGGGAAGCTACTTCGGCCATCTTTTTCGTAAACATGTCTGGTTCAAGGAGGAAGACCAGGGAGCCTAAGGAAGAGACTGTGACTCTTGGTCCTGCAGTGAGGGAAGGCGAGCATGTGTTCGGTGTGGCTCACATTTTTGCCTCATTTAACGATACATTTATTCATGTGACTGATCTTTCTGGGAGGGAAACTCTTGTCCGCATTACAGGTGGTATGAAGGTGAAAGCTGATAGGGATGAGTCCTCCCCCTACGCAGCTATGCTTGCAGCACAGGATGTTTCCCAAAGATGCAAGGAACTCGGTATTACTGCTCTTCATATTAAACTGCGTGCTACCGGAGGAAACAAGACCAAAACACCTGGTCCAGGTGCCCAATCTGCACTACGTGCTCTTGCTCGTTCTGGGATGAGGATTGGACGCATAGCTGTTAATCACTCATATGCGTTTTTTATATTTTCTAGAGGATGTGACTCCAATTCCAACAGACAGCACTCGCCGAAAGGGTGGAAGAAGAGGAAGAAGGCTGTAAGCTTACTCTGGGATTCCTACTATTATGGCTGTGTCGATGGTTTCTCTGTGGTTCTGATGCTCCTTAAGCTTTGCGGCCTTAGTTTTTCAGAACTCCAACTTGGTTTTTGA

Protein sequence

RQILVELHTGEATSAIFFVNMSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAVSLLWDSYYYGCVDGFSVVLMLLKLCGLSFSELQLGF*

Homology

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BLAST of Chy12G206050 vs. ExPASy Swiss-Prot
Match: P19951 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.2e-61
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 21  MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 80
           MSG R+KTREPKEE V LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG
Sbjct: 1   MSG-RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 60

Query: 81  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 140
           MKVKADRDESSPYAAMLA+QDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL
Sbjct: 61  MKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 120

Query: 141 ARSGMRIGRI 151
           ARSGM+IGRI
Sbjct: 121 ARSGMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. ExPASy Swiss-Prot
Match: Q9CAX6 (40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.9e-61
Identity = 117/127 (92.13%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. ExPASy Swiss-Prot
Match: P42036 (40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-60
Identity = 116/127 (91.34%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. ExPASy Swiss-Prot
Match: P19950 (40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-60
Identity = 121/127 (95.28%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           SRRKTREPKEE V LGP VREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 127

[Close]

BLAST of Chy12G206050 vs. ExPASy Swiss-Prot
Match: Q9SIH0 (40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 4.2e-60
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. ExPASy TrEMBL
Match: A0A5A7UR49 (40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00240 PE=3 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.5e-76
Identity = 152/169 (89.94%), Postives = 154/169 (91.12%), Query Frame = 0


Query: 21  MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 80
           +SGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG
Sbjct: 27  VSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 86

Query: 81  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 140
           MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL
Sbjct: 87  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 146

Query: 141 ARSGMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAVSLLW 190
           ARSGMRIGRI             GCDSNSNRQHSPKGWKKRKKAVS  +
Sbjct: 147 ARSGMRIGRI-------------GCDSNSNRQHSPKGWKKRKKAVSFTY 182

[Close]

BLAST of Chy12G206050 vs. ExPASy TrEMBL
Match: A0A5A7TQL8 (Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004090 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 1.4e-71
Identity = 143/162 (88.27%), Postives = 148/162 (91.36%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 506 SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 565

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 566 KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 625

Query: 144 GMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAV 186
           GMRIGRI     ++      GC+SN+ RQHS KGWK+RKK V
Sbjct: 626 GMRIGRIGAYSCFSVI----GCNSNTYRQHSKKGWKERKKTV 663

[Close]

BLAST of Chy12G206050 vs. ExPASy TrEMBL
Match: A0A4S8JBA3 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t20190 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.5e-68
Identity = 138/170 (81.18%), Postives = 150/170 (88.24%), Query Frame = 0


Query: 21  MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 80
           +   R+KTREPKE+ VTLGPAVREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGG
Sbjct: 3   LQSGRKKTREPKEDNVTLGPAVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 62

Query: 81  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 140
           MKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL
Sbjct: 63  MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 122

Query: 141 ARSGMRIGRI-AVNHSYAFFI----FSRGCDSNSNRQHSPKGWKKRKKAV 186
           ARSGM+IGRI A  H     +    F++GCD++S+RQH  KGWKKR+K V
Sbjct: 123 ARSGMKIGRIDAFCHICCELVLATRFAQGCDADSDRQHPQKGWKKREKTV 172

[Close]

BLAST of Chy12G206050 vs. ExPASy TrEMBL
Match: A0A4S4DHJ1 (Ribosomal_L40e domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_018280 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 7.4e-68
Identity = 139/169 (82.25%), Postives = 148/169 (87.57%), Query Frame = 0


Query: 20  NMSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 79
           N   SRRK REPKEETVTLGP+VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITG
Sbjct: 17  NTPSSRRKVREPKEETVTLGPSVRDGEIVFGVAHIFASFNDTFIHVTDLSGRETLVRITG 76

Query: 80  GMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRA 139
           GMKVKADRDESSPYAAMLAAQDVSQRCKELGI ALHIKLRATGGNKTKTPGPGAQSALRA
Sbjct: 77  GMKVKADRDESSPYAAMLAAQDVSQRCKELGINALHIKLRATGGNKTKTPGPGAQSALRA 136

Query: 140 LARSGMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAVSLL 189
           LARSGM+IGRI          + +GC S+S RQ+SPKGW+K KKA+ LL
Sbjct: 137 LARSGMKIGRI--GSIVPAIEYLKGCHSDSYRQYSPKGWQKGKKALILL 183

[Close]

BLAST of Chy12G206050 vs. ExPASy TrEMBL
Match: A0A6J1KQN4 (40S ribosomal protein S14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111495605 PE=3 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 1.3e-64
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 21  MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 80
           MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG
Sbjct: 1   MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 60

Query: 81  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 140
           MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL
Sbjct: 61  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 120

Query: 141 ARSGMRIGRI 151
           ARSGMRIGRI
Sbjct: 121 ARSGMRIGRI 130

[Close]

BLAST of Chy12G206050 vs. NCBI nr
Match: KAA0057107.1 (40S ribosomal protein S14-2-like [Cucumis melo var. makuwa] >TYK20641.1 40S ribosomal protein S14-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 296 bits (758), Expect = 4.01e-99
Identity = 152/170 (89.41%), Postives = 154/170 (90.59%), Query Frame = 0


Query: 21  MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 80
           +SGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG
Sbjct: 27  VSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 86

Query: 81  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 140
           MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL
Sbjct: 87  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 146

Query: 141 ARSGMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAVSLLWD 190
           ARSGMRIGRI             GCDSNSNRQHSPKGWKKRKKAVS  + 
Sbjct: 147 ARSGMRIGRI-------------GCDSNSNRQHSPKGWKKRKKAVSFTYS 183

[Close]

BLAST of Chy12G206050 vs. NCBI nr
Match: KAG6789163.1 (hypothetical protein POTOM_005253 [Populus tomentosa])

HSP 1 Score: 283 bits (723), Expect = 4.58e-94
Identity = 144/173 (83.24%), Postives = 156/173 (90.17%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+R+TREPKEE VTLGP VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRRTREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAVSLLW-DSYYYG 195
           GM+IGRIA N   ++ + S GCD+NSN QH  KGW+K KKAVS L  + +++G
Sbjct: 122 GMKIGRIAFNLGISYSLVS-GCDTNSNGQHPQKGWQKGKKAVSCLSSEKFHFG 173

[Close]

BLAST of Chy12G206050 vs. NCBI nr
Match: KAG6792574.1 (hypothetical protein POTOM_001726 [Populus tomentosa])

HSP 1 Score: 277 bits (709), Expect = 4.40e-92
Identity = 142/173 (82.08%), Postives = 152/173 (87.86%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+R+TREPKEE VTLGP VREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRRTREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRIAVNHSYAFFIFSRGCDSNSNRQHSPKGWKKRKKAVSLLW-DSYYYG 195
           GM+IGRI            +GCD+NSNRQH  KGW+K KKAVS L  + +++G
Sbjct: 122 GMKIGRIG-----------KGCDTNSNRQHPQKGWQKGKKAVSCLSSEKFHFG 163

[Close]

BLAST of Chy12G206050 vs. NCBI nr
Match: XP_038903510.1 (40S ribosomal protein S14-2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 276 bits (706), Expect = 3.63e-91
Identity = 142/168 (84.52%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRIAVNHSYAFFIFSR------GCDSNSNRQHSPKGWKKRKKAV 185
           GMRIGR+    +Y++F + +      GC+S+  RQHS KGW++RKK V
Sbjct: 122 GMRIGRMG---TYSYFQYLQEWLDFQGCNSDPYRQHSKKGWQERKKTV 166

[Close]

BLAST of Chy12G206050 vs. NCBI nr
Match: THU58981.1 (hypothetical protein C4D60_Mb03t20190 [Musa balbisiana])

HSP 1 Score: 271 bits (692), Expect = 7.10e-89
Identity = 142/191 (74.35%), Postives = 157/191 (82.20%), Query Frame = 0


Query: 21  MSGSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 80
           +   R+KTREPKE+ VTLGPAVREGE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGG
Sbjct: 3   LQSGRKKTREPKEDNVTLGPAVREGEQVFGVAHIFASFNDTFIHVTDLSGRETLVRITGG 62

Query: 81  MKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 140
           MKVKADRDESSPYAAMLAAQDV+QRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL
Sbjct: 63  MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 122

Query: 141 ARSGMRIGRI-AVNHSYAFFI----FSRGCDSNSNRQHSPKGWKKRKKAV--SLLWDSYY 200
           ARSGM+IGRI A  H     +    F++GCD++S+RQH  KGWKKR+K V      +   
Sbjct: 123 ARSGMKIGRIDAFCHICCELVLATRFAQGCDADSDRQHPQKGWKKREKTVVHPNATERTV 182

Query: 201 YGCVDGFSVVL 204
           Y  + GF  +L
Sbjct: 183 YSAIVGFESML 193

[Close]

BLAST of Chy12G206050 vs. TAIR 10
Match: AT3G11510.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 235.7 bits (600), Expect = 3.5e-62
Identity = 117/127 (92.13%), Postives = 124/127 (97.64%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. TAIR 10
Match: AT3G52580.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 234.6 bits (597), Expect = 7.8e-62
Identity = 116/127 (91.34%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. TAIR 10
Match: AT2G36160.1 (Ribosomal protein S11 family protein )

HSP 1 Score: 232.6 bits (592), Expect = 3.0e-61
Identity = 115/127 (90.55%), Postives = 123/127 (96.85%), Query Frame = 0


Query: 24  SRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKV 83
           S+RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKV
Sbjct: 2   SKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKV 61

Query: 84  KADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARS 143
           KADRDESSPYAAMLAAQDV+QRCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARS
Sbjct: 62  KADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARS 121

Query: 144 GMRIGRI 151
           GM+IGRI
Sbjct: 122 GMKIGRI 128

[Close]

BLAST of Chy12G206050 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 53.1 bits (126), Expect = 3.2e-07
Identity = 39/123 (31.71%), Postives = 58/123 (47.15%), Query Frame = 0


Query: 23  GSRRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMK 82
           GSR+ TR    + V   P         GV H+ ASFN+T + VTD+ GR       G   
Sbjct: 9   GSRKNTRSGSRKNVRRIPK--------GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 68

Query: 83  VKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALAR 142
            +  R   +P+AA  AA +  +   + G+    +++        K PG G  +ALRA+ R
Sbjct: 69  FRGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVRI--------KGPGLGRDAALRAIRR 114

Query: 143 SGM 146
           SG+
Sbjct: 129 SGI 114

The following BLAST results are available for this feature:

BLAST of Chy12G206050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19951	2.2e-61	94.62	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9CAX6	4.9e-61	92.13	40S ribosomal protein S14-2 OS=Arabidopsis thaliana OX=3702 GN=RPS14B PE=1 SV=1	[more]
P42036	1.1e-60	91.34	40S ribosomal protein S14-3 OS=Arabidopsis thaliana OX=3702 GN=RPS14C PE=2 SV=2	[more]
P19950	1.4e-60	95.28	40S ribosomal protein S14 OS=Zea mays OX=4577 PE=3 SV=1	[more]
Q9SIH0	4.2e-60	90.55	40S ribosomal protein S14-1 OS=Arabidopsis thaliana OX=3702 GN=RPS14A PE=1 SV=1	[more]

BLAST of Chy12G206050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UR49	2.5e-76	89.94	40S ribosomal protein S14-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5A7TQL8	1.4e-71	88.27	Beta-fructofuranosidase, insoluble isoenzyme 1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A4S8JBA3	2.5e-68	81.18	Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb03t20190 PE=3 SV=...	[more]
A0A4S4DHJ1	7.4e-68	82.25	Ribosomal_L40e domain-containing protein OS=Camellia sinensis var. sinensis OX=5...	[more]
A0A6J1KQN4	1.3e-64	100.00	40S ribosomal protein S14-2-like OS=Cucurbita maxima OX=3661 GN=LOC111495605 PE=...	[more]

BLAST of Chy12G206050 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057107.1	4.01e-99	89.41	40S ribosomal protein S14-2-like [Cucumis melo var. makuwa] >TYK20641.1 40S ribo...	[more]
KAG6789163.1	4.58e-94	83.24	hypothetical protein POTOM_005253 [Populus tomentosa]	[more]
KAG6792574.1	4.40e-92	82.08	hypothetical protein POTOM_001726 [Populus tomentosa]	[more]
XP_038903510.1	3.63e-91	84.52	40S ribosomal protein S14-2-like isoform X1 [Benincasa hispida]	[more]
THU58981.1	7.10e-89	74.35	hypothetical protein C4D60_Mb03t20190 [Musa balbisiana]	[more]

BLAST of Chy12G206050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11510.1	3.5e-62	92.13	Ribosomal protein S11 family protein	[more]
AT3G52580.1	7.8e-62	91.34	Ribosomal protein S11 family protein	[more]
AT2G36160.1	3.0e-61	90.55	Ribosomal protein S11 family protein	[more]
ATCG00750.1	3.2e-07	31.71	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 50..150 e-value: 5.5E-37 score: 126.5
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 15..150
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 25..173 score: 15.698723
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 23..155 e-value: 8.3E-56 score: 190.1
None	No IPR available	PANTHER	PTHR11759:SF37	BNAA05G27530D PROTEIN	coord: 15..150
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 46..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy12G206050.1	Chy12G206050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0048027	mRNA 5'-UTR binding
molecular_function	GO:0070181	small ribosomal subunit rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome