Chy11G203870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G203870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	TCP transcription factor
Location	chrH11: 24424506 .. 24426956 (+)
RNA-Seq Expression	Chy11G203870
Synteny	Chy11G203870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCTCTTTGTGCTGCTCGTGTCTTTCAATTAACTCGTGAATTGGGTCATAAAACTGATGGGGAGACCATTCAATGGCTTCTTCAACAAGCTGAGCCTTCTATTATTGCTGCCACTGGCTCCGGTACTATCCCCGCTTCTGCTCTTCATGCTGTTGGTGTTTCCCTTTCCGATCACGATTCCTCTGTTTCCGTCTCTGCTTCTTTAACCCCTAAAATCGAAGCGGTTCCCAGGACCAATTGGGCGATGATGGGTGCTAATTTGAGTAGATCTCATATGGCATCCCCGGGGTTTTGGCCCTCTTTAGGCGGGATTGGGACTGGATTTGTTAGTGAGAATCCGGGGTCGATTATGCCCAAGTTTGGGTTTCATGGGTTTGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACCATGATTGGGAATCAACATCAACAAATACCTGGGTTGGAGTTGGGGCTTTCGCAGGATGGGAATAATTTGAGAGGGATGTTGAATCCGCCTTCGTTTTCGCAAATTTATCATCAAATTGGCCAAAATCGTGATTCCTCTGCACAGCCATTGGAGCAGGATCAAGCTCCTGAGAAAGATGATTCTCAAGAATCGAGATGAAGAATGATGATGATGAATGAAGAATTTGATAATTTGGGTTTTCCAAATGGAAACTGTTTCGGATTTCTAGGTCTAAAATTAGGACTAAATTTGGAAAGAGGGGCAAATTGAAGAAGACGAAGACGAAGATTCAAAGATTGGTTCATAATTTTCAGCGTGTGTGTTTGATTCTTCAAATTCAGGTTAATTCTTTGCTCCTCATCCTCAATTTTTTTTTTTTATATTCCAACCAAAATTAATTTAACTTTTGATCTTCCAAAAGAATTTCTTTTTCTTTTTCCTTTTTCAGATAAGTATTCCTTATAAATAAATAAGAACAAATTTTTTTTTCTGAGAAAATAAAATTAATTTCTTTAAAATCTTTCTTGAATAAACCCCAAATTTAGTCTTTCAAAATTAAATACTTAATTTTGAAGAAAACTTCTGGATTTTCTATTTTAATGGAATAATAATAATAATCTGTTCTTGGGAATAAATTAACCAAAACAAAAGAATGTAAGGTTCTATATATAATTTATCTATTCAAGATTATTGTTTTCTTCTTCTTCTTTTTATATATATATATATATATGTATATAAATTTAGAGTGTGATTTTTTTTTATAAATATGCAGGTGGGAAGTTTTGAGGAGAAGAGTGGTTTAATTGCAAGATTGAATTTGACTTTCATTTCTTCAATTTTGAGGTGTGTGTATGTTTTTGTTTTGTTTTTTTTTTAATAATTTATATAAATAATTTGTAGAAAAGAAAATGAGTGTAATATTTAGTAATTTTTGTGAAGTTGATGTGGAAATTGAAAATTGTTCCATCATTGCATTTAAATTTAATGGATGGTAAGTTAAAGAAGAAACAACAATCTATCCATTGCAAAATCTGTGGTCAATATTGAGAACCAAATGCCAATTCTATCAATCTCCATAATTCTCCAATAATTTCACCATCATATATTATTACTATTTCTTCTCTTCCTCACAATTAATTTCTCCCCTATTTTTTTTTTATATTTTTGAAAAATAATATTTGAATTTTAAGTTGAAACGTTCTATTATGATATATAGACACTAGTCTATTGTTATATATCGCAAACAATCATAGATAGACGATGATATTTTGCAAATATTTTTAAAAGACACCCTTTAATTTACTTTCTATCAAAGTCTTAAAATTTGTGTAAACTTTTGAAAACAAAAAAAGAAATTGTATGTTTTTTATTTGCACTAAGAATTTAATTTTTGTGTACTTAACAATTATGAAAATTACGATAAGGAATGGAAACAAAAAATGAGAAGGTTACAAAAACATATTGAAAACATAATTTTTAAAAAGTATATTTTGTTTTATAAATTTGAATGCGAATTTAAATTAAATATTTGTGTTAAAAGAAAAAAAAAAAAAGATGAAAATCATAATTTGAAAATTGTGAGGAGGGAACGTAAGTTTCAAAACTAGTGAGCCAAATACAAATTTGTTTATTAATTTGCTCATGGAAATTATTAGTAATCTAACAAGTTCATCTATGTTTGGCTCCTCCATCTCTCTCTCTATATGCATATTGATGAAGACAAATAACAAAAGACTTCAATTTTCTCAAACATGTAAATCAAACAAAGAGAGACTCCCCAGTCCCCAACTAGGAGGTTTGGCTTCATAATCCAAAGTTTTATTTTGTTATGTACATCGAGATGTAGCAAATATAGGGGGGGGTATCCATGGATATTTAATTAAGCTTTTAGAAAACAAAAGTCATTTGTACGTACTCAAAACTAGATGTGTATTAGAAAGCTAGTGAATCTGTGTAAAGAAATGTTGCAGGTGGAAGAAGCCTGCTTGA

mRNA sequence

ATGCCTGCTCTTTGTGCTGCTCGTGTCTTTCAATTAACTCGTGAATTGGGTCATAAAACTGATGGGGAGACCATTCAATGGCTTCTTCAACAAGCTGAGCCTTCTATTATTGCTGCCACTGGCTCCGGTACTATCCCCGCTTCTGCTCTTCATGCTGTTGGTGTTTCCCTTTCCGATCACGATTCCTCTGTTTCCGTCTCTGCTTCTTTAACCCCTAAAATCGAAGCGGTTCCCAGGACCAATTGGGCGATGATGGGTGCTAATTTGAGTAGATCTCATATGGCATCCCCGGGGTTTTGGCCCTCTTTAGGCGGGATTGGGACTGGATTTGTTAGTGAGAATCCGGGGTCGATTATGCCCAAGTTTGGGTTTCATGGGTGGAAGAAGCCTGCTTGA

Coding sequence (CDS)

ATGCCTGCTCTTTGTGCTGCTCGTGTCTTTCAATTAACTCGTGAATTGGGTCATAAAACTGATGGGGAGACCATTCAATGGCTTCTTCAACAAGCTGAGCCTTCTATTATTGCTGCCACTGGCTCCGGTACTATCCCCGCTTCTGCTCTTCATGCTGTTGGTGTTTCCCTTTCCGATCACGATTCCTCTGTTTCCGTCTCTGCTTCTTTAACCCCTAAAATCGAAGCGGTTCCCAGGACCAATTGGGCGATGATGGGTGCTAATTTGAGTAGATCTCATATGGCATCCCCGGGGTTTTGGCCCTCTTTAGGCGGGATTGGGACTGGATTTGTTAGTGAGAATCCGGGGTCGATTATGCCCAAGTTTGGGTTTCATGGGTGGAAGAAGCCTGCTTGA

Protein sequence

MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDHDSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMPKFGFHGWKKPA*

Homology

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BLAST of Chy11G203870 vs. ExPASy Swiss-Prot
Match: Q9LSD5 (Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.4e-25
Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAAR+FQLTRELGHK+DGETIQWLLQQAEPSIIAATGSGTIPASAL A   + S+H
Sbjct: 94  MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASAL-ASSAATSNH 153

Query: 61  DSSVSVSASLT-------PKIEAVPRTNWAMMGA-NLSRSHMASPGFWPSLGGIG----- 120
               S++A L            +    NW + G   +SRS + + G WP++ G G     
Sbjct: 154 HQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPT-GLWPNVAGFGSGVPT 213

Query: 121 TGFVSENPGSIMPKFGFHGWKKP 131
           TG +SE  G    + GF G+  P
Sbjct: 214 TGLMSEGAGY---RIGFPGFDFP 231

[Close]

BLAST of Chy11G203870 vs. ExPASy Swiss-Prot
Match: Q93Z00 (Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-19
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHK+DGETI+WLLQQAEPS+IAATG+GTIPA+   ++ +SL   
Sbjct: 133 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRSS 192

Query: 61  DSSVSV 67
            SS+S+
Sbjct: 193 GSSMSL 197

[Close]

BLAST of Chy11G203870 vs. ExPASy Swiss-Prot
Match: Q9C9L2 (Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPA+CAARVFQLTRELGHK+DGETI+WLLQQAEP++IAATG+GTIPA+   ++ +SL   
Sbjct: 68  MPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPAN-FTSLNISLRSS 127

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASP 98
            SS+S +   T        +    M  +L   H   P
Sbjct: 128 RSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRP 163

[Close]

BLAST of Chy11G203870 vs. ExPASy Swiss-Prot
Match: Q53PH2 (Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-18
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPA--SALHAVGVSLS 60
           MPALCAARVFQLTRELGHKTDGETI+WLLQQAEP+I+AATG+GTIPA  S+L     S +
Sbjct: 168 MPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSSLAVSLRSAA 227

Query: 61  DHDSS 64
            H SS
Sbjct: 228 SHSSS 232

[Close]

BLAST of Chy11G203870 vs. ExPASy Swiss-Prot
Match: Q9C518 (Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.4e-18
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHK+DGETI+WLLQQAEP+I+AATG+GTIPA+    + VSL   
Sbjct: 76  MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSS 135

Query: 61  DSSVSVSAS 70
            S++S   S
Sbjct: 136 GSTLSAPPS 143

[Close]

BLAST of Chy11G203870 vs. ExPASy TrEMBL
Match: A0A1S3CAQ4 (transcription factor TCP20-like OS=Cucumis melo OX=3656 GN=LOC103498864 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.6e-64
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSDH
Sbjct: 89  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDH 148

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMA+PGFWPSLGGIGTGFVSENPGSIMP
Sbjct: 149 DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMATPGFWPSLGGIGTGFVSENPGSIMP 208

Query: 121 KFGFHGWK 129
           KFGFHG++
Sbjct: 209 KFGFHGFE 216

[Close]

BLAST of Chy11G203870 vs. ExPASy TrEMBL
Match: A0A5A7T992 (Transcription factor TCP20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002190 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 6.6e-64
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSDH
Sbjct: 89  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDH 148

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMA+PGFWPSLGGIGTGFVSENPGSIMP
Sbjct: 149 DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMATPGFWPSLGGIGTGFVSENPGSIMP 208

Query: 121 KFGFHGWK 129
           KFGFHG++
Sbjct: 209 KFGFHGFE 216

[Close]

BLAST of Chy11G203870 vs. ExPASy TrEMBL
Match: A0A0A0KC88 (TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G093640 PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 8.6e-64
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH
Sbjct: 87  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 146

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMAS GFWPSLGGIGTGFVSENPGSIMP
Sbjct: 147 DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASQGFWPSLGGIGTGFVSENPGSIMP 206

Query: 121 KFGFHGWK 129
           KFGFHG++
Sbjct: 207 KFGFHGFE 214

[Close]

BLAST of Chy11G203870 vs. ExPASy TrEMBL
Match: A0A6J1GQQ8 (transcription factor TCP20-like OS=Cucurbita moschata OX=3662 GN=LOC111456629 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.7e-59
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSD 
Sbjct: 136 MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDP 195

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           D+SVSVSA+LTPKI+AVPR NWAMMGANL+RSHM +PGFWPSLGGIG GFVSENPGSIMP
Sbjct: 196 DTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMP 255

Query: 121 KFGFHGWK 129
           KFGFHG++
Sbjct: 256 KFGFHGFE 263

[Close]

BLAST of Chy11G203870 vs. ExPASy TrEMBL
Match: A0A6J1JW14 (transcription factor TCP20-like OS=Cucurbita maxima OX=3661 GN=LOC111488026 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.9e-58
Identity = 114/128 (89.06%), Postives = 122/128 (95.31%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSI+AATGSGTIPASALHA GVSLSD 
Sbjct: 70  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIMAATGSGTIPASALHAAGVSLSDP 129

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           D+SVSVSA+ TPKI+AVPR NWAMMGANL+RSHM +PGFWPSLGGIG GFVSENPGSIMP
Sbjct: 130 DTSVSVSATQTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMP 189

Query: 121 KFGFHGWK 129
           KFGFHG++
Sbjct: 190 KFGFHGFE 197

[Close]

BLAST of Chy11G203870 vs. NCBI nr
Match: XP_008459878.1 (PREDICTED: transcription factor TCP20-like [Cucumis melo] >XP_016902500.1 PREDICTED: transcription factor TCP20-like [Cucumis melo] >KAA0039830.1 transcription factor TCP20-like [Cucumis melo var. makuwa] >TYK24669.1 transcription factor TCP20-like [Cucumis melo var. makuwa])

HSP 1 Score: 252 bits (643), Expect = 8.32e-82
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSDH
Sbjct: 89  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDH 148

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMA+PGFWPSLGGIGTGFVSENPGSIMP
Sbjct: 149 DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMATPGFWPSLGGIGTGFVSENPGSIMP 208

Query: 121 KFGFHGWK 128
           KFGFHG++
Sbjct: 209 KFGFHGFE 216

[Close]

BLAST of Chy11G203870 vs. NCBI nr
Match: XP_011656799.1 (transcription factor TCP20 [Cucumis sativus] >XP_031743603.1 transcription factor TCP20 [Cucumis sativus] >KGN46444.1 hypothetical protein Csa_005032 [Cucumis sativus])

HSP 1 Score: 251 bits (642), Expect = 1.11e-81
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH
Sbjct: 87  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 146

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMAS GFWPSLGGIGTGFVSENPGSIMP
Sbjct: 147 DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASQGFWPSLGGIGTGFVSENPGSIMP 206

Query: 121 KFGFHGWK 128
           KFGFHG++
Sbjct: 207 KFGFHGFE 214

[Close]

BLAST of Chy11G203870 vs. NCBI nr
Match: XP_038876191.1 (transcription factor TCP20-like [Benincasa hispida])

HSP 1 Score: 241 bits (616), Expect = 6.30e-78
Identity = 118/128 (92.19%), Postives = 124/128 (96.88%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSDH
Sbjct: 73  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDH 132

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           DSSVSVSA+LTPKI+AVPR NWAMMG NL+RSHMA+ GFWPSLGGIGTGFVSENPGSIMP
Sbjct: 133 DSSVSVSATLTPKIDAVPRPNWAMMGTNLNRSHMATTGFWPSLGGIGTGFVSENPGSIMP 192

Query: 121 KFGFHGWK 128
           KFGFHG++
Sbjct: 193 KFGFHGFE 200

[Close]

BLAST of Chy11G203870 vs. NCBI nr
Match: KAG6576122.1 (Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 237 bits (605), Expect = 3.14e-76
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSD 
Sbjct: 73  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDP 132

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           D+SVSVSA+LTPKI+AVPR NWAMMGANL+RSHM +PGFWPSLGGIG GFVSENPGSIMP
Sbjct: 133 DTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMP 192

Query: 121 KFGFHGWK 128
           KFGFHG++
Sbjct: 193 KFGFHGFE 200

[Close]

BLAST of Chy11G203870 vs. NCBI nr
Match: KAG7014641.1 (Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 237 bits (605), Expect = 3.34e-76
Identity = 116/128 (90.62%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHA GVSLSD 
Sbjct: 75  MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDP 134

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASPGFWPSLGGIGTGFVSENPGSIMP 120
           D+SVSVSA+LTPKI+AVPR NWAMMGANL+RSHM +PGFWPSLGGIG GFVSENPGSIMP
Sbjct: 135 DTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMP 194

Query: 121 KFGFHGWK 128
           KFGFHG++
Sbjct: 195 KFGFHGFE 202

[Close]

BLAST of Chy11G203870 vs. TAIR 10
Match: AT3G27010.1 (TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 )

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-26
Identity = 74/143 (51.75%), Postives = 90/143 (62.94%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAAR+FQLTRELGHK+DGETIQWLLQQAEPSIIAATGSGTIPASAL A   + S+H
Sbjct: 94  MPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASAL-ASSAATSNH 153

Query: 61  DSSVSVSASLT-------PKIEAVPRTNWAMMGA-NLSRSHMASPGFWPSLGGIG----- 120
               S++A L            +    NW + G   +SRS + + G WP++ G G     
Sbjct: 154 HQGGSLTAGLMISHDLDGGSSSSGRPLNWGIGGGEGVSRSSLPT-GLWPNVAGFGSGVPT 213

Query: 121 TGFVSENPGSIMPKFGFHGWKKP 131
           TG +SE  G    + GF G+  P
Sbjct: 214 TGLMSEGAGY---RIGFPGFDFP 231

[Close]

BLAST of Chy11G203870 vs. TAIR 10
Match: AT3G47620.1 (TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14 )

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-20
Identity = 48/66 (72.73%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHK+DGETI+WLLQQAEPS+IAATG+GTIPA+   ++ +SL   
Sbjct: 133 MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPAN-FTSLNISLRSS 192

Query: 61  DSSVSV 67
            SS+S+
Sbjct: 193 GSSMSL 197

[Close]

BLAST of Chy11G203870 vs. TAIR 10
Match: AT1G69690.1 (TCP family transcription factor )

HSP 1 Score: 94.4 bits (233), Expect = 7.5e-20
Identity = 51/97 (52.58%), Postives = 65/97 (67.01%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPA+CAARVFQLTRELGHK+DGETI+WLLQQAEP++IAATG+GTIPA+   ++ +SL   
Sbjct: 68  MPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPAN-FTSLNISLRSS 127

Query: 61  DSSVSVSASLTPKIEAVPRTNWAMMGANLSRSHMASP 98
            SS+S +   T        +    M  +L   H   P
Sbjct: 128 RSSLSAAHLRTTPSSYYFHSPHQSMTHHLQHQHQVRP 163

[Close]

BLAST of Chy11G203870 vs. TAIR 10
Match: AT1G58100.1 (TCP family transcription factor )

HSP 1 Score: 94.0 bits (232), Expect = 9.8e-20
Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAVGVSLSDH 60
           MPALCAARVFQLTRELGHK+DGETI+WLLQQAEP+I+AATG+GTIPA+    + VSL   
Sbjct: 76  MPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPAN-FSTLSVSLRSS 135

Query: 61  DSSVSVSAS 70
            S++S   S
Sbjct: 136 GSTLSAPPS 143

[Close]

BLAST of Chy11G203870 vs. TAIR 10
Match: AT1G72010.1 (TCP family transcription factor )

HSP 1 Score: 90.9 bits (224), Expect = 8.3e-19
Identity = 41/48 (85.42%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 1   MPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPAS 49
           MPA+CAARVFQLTRELGHK+DGETI+WLLQQAEP+IIA+TG+GTIPA+
Sbjct: 79  MPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPAN 126

The following BLAST results are available for this feature:

BLAST of Chy11G203870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSD5	3.4e-25	51.75	Transcription factor TCP20 OS=Arabidopsis thaliana OX=3702 GN=TCP20 PE=1 SV=1	[more]
Q93Z00	3.6e-19	72.73	Transcription factor TCP14 OS=Arabidopsis thaliana OX=3702 GN=TCP14 PE=1 SV=1	[more]
Q9C9L2	1.1e-18	52.58	Transcription factor TCP15 OS=Arabidopsis thaliana OX=3702 GN=TCP15 PE=1 SV=1	[more]
Q53PH2	1.4e-18	75.38	Transcription factor PCF3 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF3 PE=2 ...	[more]
Q9C518	1.4e-18	69.57	Transcription factor TCP8 OS=Arabidopsis thaliana OX=3702 GN=TCP8 PE=1 SV=1	[more]

BLAST of Chy11G203870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CAQ4	6.6e-64	96.88	transcription factor TCP20-like OS=Cucumis melo OX=3656 GN=LOC103498864 PE=4 SV=...	[more]
A0A5A7T992	6.6e-64	96.88	Transcription factor TCP20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0KC88	8.6e-64	97.66	TCP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G093640 PE=4 SV...	[more]
A0A6J1GQQ8	1.7e-59	90.63	transcription factor TCP20-like OS=Cucurbita moschata OX=3662 GN=LOC111456629 PE...	[more]
A0A6J1JW14	1.9e-58	89.06	transcription factor TCP20-like OS=Cucurbita maxima OX=3661 GN=LOC111488026 PE=4...	[more]

BLAST of Chy11G203870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008459878.1	8.32e-82	96.88	PREDICTED: transcription factor TCP20-like [Cucumis melo] >XP_016902500.1 PREDIC...	[more]
XP_011656799.1	1.11e-81	97.66	transcription factor TCP20 [Cucumis sativus] >XP_031743603.1 transcription facto...	[more]
XP_038876191.1	6.30e-78	92.19	transcription factor TCP20-like [Benincasa hispida]	[more]
KAG6576122.1	3.14e-76	90.63	Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7014641.1	3.34e-76	90.63	Transcription factor TCP20, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Chy11G203870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27010.1	2.4e-26	51.75	TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20	[more]
AT3G47620.1	2.6e-20	72.73	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	[more]
AT1G69690.1	7.5e-20	52.58	TCP family transcription factor	[more]
AT1G58100.1	9.8e-20	69.57	TCP family transcription factor	[more]
AT1G72010.1	8.3e-19	85.42	TCP family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 1..75 e-value: 4.9E-20 score: 72.7
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 1..39 score: 20.884634
None	No IPR available	PANTHER	PTHR31072:SF121	TRANSCRIPTION FACTOR TCP20-LIKE	coord: 1..117
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G203870.1	Chy11G203870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding