Chy11G203780 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G203780
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Fcf2 domain-containing protein
Location	chrH11: 24359819 .. 24363181 (+)
RNA-Seq Expression	Chy11G203780
Synteny	Chy11G203780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAAAGAAAGCCCATAATTGGCCTCTCTTGGGAGCCAAAGCTGCCAGCCTCCTCATCGGGGATCAAAGCTAAAACTTGCGACAAATCTAATAGTCAAGCAGAAAACGGTCTTGTTTGGAAAAGCAATTCAGAGCTTGTAGATGGGTTATTTGTTCCACCAAACAACCCAAAAAAGTTGAACAAGTTATTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAATTGGTATATGCTCTCTTCTCTATAAATTTCAGCAGTTTTACTATTGATTCATGAAAAAAAAAAAAAAAAAAACTAGACTAAGGTTTTTTTTCTATTTTTTTTAATGCTGATTAACCATAGTAGTTGATGTTTTAAATTCTAATACCTATTCGCTTGTCACTGTAATTAGGTTTGACATGCCAGCAAAAACCATGACCCCTGAAGTGGAAAAAGATTTGCGCTTGTTGAAGGTGAGACTGTCTCTGATGTACTATCCATTTTACTCTTGATCGGTTTTCTATCCACACGTGTAGCAAGCTGGTAACTTTGACCGTGTATCAAGAGTTTTCTTCTAGTTCGTTTTTTCATTACGTACCAGACTATTTTTCTTCTTGGGAATTCATTTTCTTGTTTCTTTTGGAAGGTGAAAACCCTAAAAAATATGAAGTTTTTTGTCTCCCAAGCTCTTTAGGATAACGCCTTCTTTGTTGGGCCTTTTGATAGACATGTTGTTCGGGGTATATTAACACATAGTTAAAAAAGTTGTTAGGGTATTTGGTTATAAATGTGAGAGGTGAAGAAGGGGAAAGTTGACATTATGTTGATGAGTGGAAGTAATAGCCAAATACAAATAAGGAAGAGACATGCCGGGGCGGTCCAGCTCTTCATGGAAGTCGAGCAGAGTTCAATTGGAGCTCTAGATCTCAAGGGGGGAAGGGCCCAAGTACTTTGAATTACTTGGCTATCCTGTAAGCTTTCAAGTTTCATCCTTTACATTAGCATTCTACTATAGTTTGAACTTGTAGTGCTTCCTACCAAATTATTATAGAGCTTTTCGGTTCTCGTCATGAAGTTTGAGTGAACAATACTGAAGAGTGTTTGTGAAAGGTTTAAGGAGTTGATAGATTGATGGCAGGAGAACATGATGTCTATTTTCCAATATTTTCGAGCCACGACTCAAAAAATTGAAGAGAAAATAGTAGAATTAAAGAGGAAATTGAATTAATATTGGGAGAAATGGAAGAATCGGGAGTATTATCTAGTCAAGGCAGAGTGAAAGGGAAATCAATCTAGAAAAGAAGGAGAAATAAGACCTTGTTGAAGTGGAAAGTTTTTGTACAAAAGTTGGAAAAATAAAAAAGAGTTCGAATCTGTCAAGGAAGAATGAGGTTGTATGAAAGCGAAAGAAAGCACACAGAGAGGATCTAAGACTAACTGAAAGACGGGTGGCTGGAAAAACATTGAGGAAAAAGGATTGAGAAAGTCAGTTAATGATTTGCCAGTATTTGAAAACCTGCCAAGGGGTGCAAAATGCATTCAAGGCAAAGAAGGTGAAGTATTTGAGGTAGATATGTCAGCAAGGAGAATCATTGACAAAATATGTCCAAAGGGGGATCATTGACGATTGTTGTTTAAAAGGTTGGAATGAAAACCTGGAAGAGATGTCGGGACCGGGGTTGTGGAGAGGAAGTGGAGGGATCAAGGGTGTACAATAAAGAAGAGAATAAATATATATATATATATATATAAAAAAAAAAAAAAAAAAAAGGTACCTAACAGGCTGTTGTAGGCAGTAAGTGACAACATGGACGGGGATGAAAACTTGGAAGGGCACTAACGCAAGTTGGGTGAAGATGAACACGTGCATATTAGGTTTGTTGTCAATTGTCATGTGTGTTGTGAGAATAAAAAAGAGTATGGAATTAACTGAGTCCAATTGTTGGATTTAAATTAATTGATGAGGTTCACTTGTTTGGTTTGGATTCCAATGAATTGCTAAGGTCCAAGTACCTTGAATTACTTAGCTGTCTTTTATGTTTTTATCCTTCACAGTTCAATATAGTTTGATTCTGTACTATTCCTACCACCTTTTATTGCATCCTTTGTTTGAGGGCTTTGGAAGTGAGTAATTTATTTTGAAGTTGTGATTATGGCTAGTCGGTATGGAATTGCTTTTTTGGTGTGTTTAAGCTTTTAGTGATATGACCTAGAAATTTCTCCTCCATCTACCGTTGCAGGGGTTGGAATTTTTTTATGACTAGCTAGGTTGTGTGCTTTATAGTGTGGTTTATGAGGGGAGAGAATAAGAGGATTTTTAGAGGGGTTGATGCTTGATTCGTTATGAGATTGTTTCTCTTTGGTATCGGTGACAAATTTCTTTTGTAATTATTCGTTGGGTCTTATTTTATTCAATTAGACCTTTTTTCACCTTTGCATTAGTTCTTGATACGTGTTTTATTATCTTCTATTTCCTCGGAAGAAAATTTGTTTGAGATTGACTTCTGCATCTCTGTTTCTCTTGATGATTATAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGATTCGAAATTGAAAACTCTTCCCAAATATTTCCAGGCAAGCTTTTAGTTCAAGTGTTTTGCTAATTTATACATGGGCAAAATAAAATTTTCTAATTTGACATAATTTACAGTGTTTGTATCTGCTTTAGACCTATGTAATGTTTTAAGTACTTTTCAGGTGGGAACTGTGGTTGAGTCTTCGTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGATGAGCTGCTATCCGACCAGGCTCTCACTCAGTACAGGTTTGATCTTTTATCATTTCCTCTTGCTATTGCAAAATTTTCCAGTGAAGGAAAAGAAATGGGGAAGTATATGGCTACCCATTTTGAATTCTACAAATTATCCATTCCTAACCTATGGCTGGCTGCTTCCTATGAATCATTTGCATGTATGCTTGTTTATGAAGTTAAACTTAGAATTGAAAAATGTAAAGCGTATTCTGATGCAAGATTGGTGGAACATGATATGACTCTTATCTTATCATCTTTCGTGTCTGTCAAAACAGATTGTAGTGATCACTCTCCTCAACCAGTTTTCTCATTGACTCTCACCTCATGATTTCAAAGATTCTTTTGTTTCAACTTTCAACTCAGAATGTATTAATTCTGGTGCATTATCAAACATTTTGTTGTACTTATGCTCTTTCTAAAACCTTTTGCAGAAAACGTAAAGTTCGAGAAATCGAAGAACAGAATCGACCTGGTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAG

mRNA sequence

ATGTCGAAAAGAAAGCCCATAATTGGCCTCTCTTGGGAGCCAAAGCTGCCAGCCTCCTCATCGGGGATCAAAGCTAAAACTTGCGACAAATCTAATAGTCAAGCAGAAAACGGTCTTGTTTGGAAAAGCAATTCAGAGCTTGTAGATGGGTTATTTGTTCCACCAAACAACCCAAAAAAGTTGAACAAGTTATTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAATTGGTTTGACATGCCAGCAAAAACCATGACCCCTGAAGTGGAAAAAGATTTGCGCTTGTTGAAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGATTCGAAATTGAAAACTCTTCCCAAATATTTCCAGGTGGGAACTGTGGTTGAGTCTTCGTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGATGAGCTGCTATCCGACCAGGCTCTCACTCAGTACAGAAAACGTAAAGTTCGAGAAATCGAAGAACAGAATCGACCTGGTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAG

Coding sequence (CDS)

ATGTCGAAAAGAAAGCCCATAATTGGCCTCTCTTGGGAGCCAAAGCTGCCAGCCTCCTCATCGGGGATCAAAGCTAAAACTTGCGACAAATCTAATAGTCAAGCAGAAAACGGTCTTGTTTGGAAAAGCAATTCAGAGCTTGTAGATGGGTTATTTGTTCCACCAAACAACCCAAAAAAGTTGAACAAGTTATTGAGAAAGCAAGTCAGTGACACGGCTGGGAGGAATTGGTTTGACATGCCAGCAAAAACCATGACCCCTGAAGTGGAAAAAGATTTGCGCTTGTTGAAGCTGAGGAGTGTCATTGATCCAAAGAGACACTACAAGAAGGGTGATTCGAAATTGAAAACTCTTCCCAAATATTTCCAGGTGGGAACTGTGGTTGAGTCTTCGTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAAAGGAAAGCAACGCTTGCAGATGAGCTGCTATCCGACCAGGCTCTCACTCAGTACAGAAAACGTAAAGTTCGAGAAATCGAAGAACAGAATCGACCTGGTGGCAACGATAAATGGAAAATAAGGGGTCATCATTCACGAAAACGGGCAAAGGATAGGAGGAACTAG

Protein sequence

MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDKWKIRGHHSRKRAKDRRN*

Homology

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BLAST of Chy11G203780 vs. ExPASy Swiss-Prot
Match: O42877 (rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf2 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 7.9e-26
Identity = 54/117 (46.15%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 66  RKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPKYFQVG 125
           +K + DTAG NWFDMPA  +T  V++D++LLK+R+ +DPKRHY++ ++  K++PKYFQVG
Sbjct: 104 KKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENT--KSMPKYFQVG 163

Query: 126 TVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDKWK 183
           ++VE   DF+S R+  +ERK T+ DELL D     Y K+K  E+++    G   ++K
Sbjct: 164 SIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQKSKMSGRKGQYK 218

[Close]

BLAST of Chy11G203780 vs. ExPASy Swiss-Prot
Match: Q5QJE6 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=9606 GN=DNTTIP2 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 8.1e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 53  VPPNNPKK--LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKK 112
           VPP +  K  L K  RK+   TAG  WF M A  MT E++ DL+ LK+R+ +DPKR YKK
Sbjct: 619 VPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKK 678

Query: 113 GDSKLKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREI 170
            D      PKYFQ+GT+V++  DF+  R+ KK+RK T+ +ELL+D    +Y +RK  EI
Sbjct: 679 NDR--DGFPKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEELLADSEFRRYNRRKYSEI 735

[Close]

BLAST of Chy11G203780 vs. ExPASy Swiss-Prot
Match: Q8R2M2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10090 GN=Dnttip2 PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.0e-22
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 53  VPPNNPKK--LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKK 112
           VPP +  K  L K  RK+   TAG  WF M A  +T E++ DLR LK+R+ +DPKR YKK
Sbjct: 621 VPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKK 680

Query: 113 GDSKLKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIE 172
            D      PKYFQVGT+V++  DF+  R+ KK+RK T+ +ELL+D    ++ +RK  EI 
Sbjct: 681 NDR--DGFPKYFQVGTIVDNPADFYHSRIPKKQRKKTIVEELLADSEFRRFNRRKYSEIM 740

Query: 173 EQNRPGGNDK 181
            +       K
Sbjct: 741 AEKAANAEGK 748

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BLAST of Chy11G203780 vs. ExPASy Swiss-Prot
Match: Q0P5H2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913 GN=DNTTIP2 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 5.3e-22
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 53  VPP--NNPKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKK 112
           VPP   +  KL K  R++   TAG  WF M A  +T E++ DL+ LK+R+ +DPKR YKK
Sbjct: 629 VPPYSESKYKLQKKRRQERQKTAGDGWFGMKAPELTDELKNDLKALKMRASMDPKRFYKK 688

Query: 113 GDSKLKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREI 170
            D      PKYFQ+GT+V++  DF+  R+ KK+RK T+ +ELL+D    +Y +RK  EI
Sbjct: 689 NDR--DGFPKYFQIGTIVDNPADFYHSRVPKKQRKRTIVEELLADSEFRRYNRRKYSEI 745

[Close]

BLAST of Chy11G203780 vs. ExPASy Swiss-Prot
Match: Q12035 (rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.1e-17
Identity = 56/160 (35.00%), Postives = 86/160 (53.75%), Query Frame = 0


Query: 42  KSNSELVDGLFVPPNNPKKLNKL--------LRKQVSDTAGRNWFDMPA--KTMTPEVEK 101
           K   +L  G     N  KK N L         +   SD    +WF +P     M  EV++
Sbjct: 60  KKLPKLETGFDALANKKKKKNVLPSVETEDKRKPNKSDKNDNDWFTLPKPDDNMRREVQR 119

Query: 102 DLRLLKLRSVIDPKRHYKKGDSKLKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADE 161
           DL L+K R+ +DPKRHYKK   +   +P+ F +GT++E   +F+S R+ +KERK+T+ + 
Sbjct: 120 DLLLIKHRAALDPKRHYKK---QRWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILET 179

Query: 162 LLSDQALTQYRKRKVREIEEQNRPGGNDKWKIRGHHSRKR 192
           L+ D+A  +Y KRK  EI+E++  G    +K      +KR
Sbjct: 180 LMGDEASNKYFKRKYNEIQEKSTSGRKAHYKKMKEMRKKR 216

[Close]

BLAST of Chy11G203780 vs. ExPASy TrEMBL
Match: A0A0A0K9M7 (Fcf2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094730 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.4e-104
Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MSK KPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK
Sbjct: 1   MSKGKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 198
           WKIRGHHSRKRAKDRRN
Sbjct: 181 WKIRGHHSRKRAKDRRN 197

[Close]

BLAST of Chy11G203780 vs. ExPASy TrEMBL
Match: A0A1S3CB58 (rRNA-processing protein fcf2 OS=Cucumis melo OX=3656 GN=LOC103498854 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.4e-102
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS+RKPIIGLSWEPKLPASSSGIK KTCDKSN+QAENG+VWKSNSELVDGLFVPPNNPKK
Sbjct: 1   MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 198
           WKIRG+HSRKRAKDRRN
Sbjct: 181 WKIRGNHSRKRAKDRRN 197

[Close]

BLAST of Chy11G203780 vs. ExPASy TrEMBL
Match: A0A6J1H9T2 (rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 4.4e-96
Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS +KP+I LSWEPKLP SSSGIK K CDKS+SQA NGLVWK+NSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAGNGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGRNWFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 198
           WKIRG  SRKRAK+RRN
Sbjct: 181 WKIRGRQSRKRAKERRN 197

[Close]

BLAST of Chy11G203780 vs. ExPASy TrEMBL
Match: A0A6J1KU17 (rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE=4 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 7.5e-96
Identity = 179/197 (90.86%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS +KP+I LSWEPKLP SSSGIK K CDKS+SQAENGLVWK+NSELVDGLFVPPNNPKK
Sbjct: 2   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 61

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 62  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 121

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRPGGNDK
Sbjct: 122 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDK 181

Query: 181 WKIRGHHSRKRAKDRRN 198
           WKIRG  S+KRAK+RRN
Sbjct: 182 WKIRGRQSQKRAKERRN 198

[Close]

BLAST of Chy11G203780 vs. ExPASy TrEMBL
Match: A0A6J1DMD6 (rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.4e-94
Identity = 176/197 (89.34%), Postives = 187/197 (94.92%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS++KP+IGLSWEPKL  SSSGIK KTCDKS+ Q E+ LVWK+N+ELVDGLFVPPNNPKK
Sbjct: 1   MSEKKPVIGLSWEPKLATSSSGIKTKTCDKSHIQPESSLVWKTNTELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPELEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEE NRP GNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEELNRPAGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 198
           WKIRG HSRKRAK+RRN
Sbjct: 181 WKIRGRHSRKRAKERRN 197

[Close]

BLAST of Chy11G203780 vs. NCBI nr
Match: XP_011656806.1 (rRNA-processing protein fcf2 [Cucumis sativus] >KGN46455.1 hypothetical protein Csa_005413 [Cucumis sativus])

HSP 1 Score: 385 bits (989), Expect = 9.47e-135
Identity = 195/197 (98.98%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MSK KPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK
Sbjct: 1   MSKGKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 197
           WKIRGHHSRKRAKDRRN
Sbjct: 181 WKIRGHHSRKRAKDRRN 197

[Close]

BLAST of Chy11G203780 vs. NCBI nr
Match: XP_008459856.1 (PREDICTED: rRNA-processing protein fcf2 [Cucumis melo])

HSP 1 Score: 380 bits (976), Expect = 9.09e-133
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS+RKPIIGLSWEPKLPASSSGIK KTCDKSN+QAENG+VWKSNSELVDGLFVPPNNPKK
Sbjct: 1   MSERKPIIGLSWEPKLPASSSGIKTKTCDKSNNQAENGIVWKSNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 197
           WKIRG+HSRKRAKDRRN
Sbjct: 181 WKIRGNHSRKRAKDRRN 197

[Close]

BLAST of Chy11G203780 vs. NCBI nr
Match: XP_038876081.1 (rRNA-processing protein fcf2 [Benincasa hispida] >XP_038876082.1 rRNA-processing protein fcf2 [Benincasa hispida])

HSP 1 Score: 368 bits (944), Expect = 6.88e-128
Identity = 184/197 (93.40%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS++KPIIGLSWEPKLPASSSGI+ K CDKSN+QAENGLVWK+NSELVDGLFVPPNNPKK
Sbjct: 1   MSEKKPIIGLSWEPKLPASSSGIRTKACDKSNTQAENGLVWKTNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQV DTAGRNWFDMPA+TMTPEVEKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVRDTAGRNWFDMPAQTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRP GNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPAGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 197
           WKIRG HSRKRAKDRRN
Sbjct: 181 WKIRGRHSRKRAKDRRN 197

[Close]

BLAST of Chy11G203780 vs. NCBI nr
Match: KAG6592956.1 (hypothetical protein SDJN03_12432, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 359 bits (922), Expect = 1.55e-124
Identity = 180/197 (91.37%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS +KP+I LSWEPKLP SSSGIK K CDKS+SQAENGLVWK+NSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGR+WFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 197
           WKIRG  SRKRAK+RRN
Sbjct: 181 WKIRGRQSRKRAKERRN 197

[Close]

BLAST of Chy11G203780 vs. NCBI nr
Match: XP_022960049.1 (rRNA-processing protein fcf2-like [Cucurbita moschata])

HSP 1 Score: 358 bits (920), Expect = 3.14e-124
Identity = 180/197 (91.37%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKK 60
           MS +KP+I LSWEPKLP SSSGIK K CDKS+SQA NGLVWK+NSELVDGLFVPPNNPKK
Sbjct: 1   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAGNGLVWKNNSELVDGLFVPPNNPKK 60

Query: 61  LNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPK 120
           LNKLLRKQVSDTAGRNWFDMPA+TMTPE+EKDLRLLKLRSVIDPKRHYKKGDSK KTLPK
Sbjct: 61  LNKLLRKQVSDTAGRNWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPK 120

Query: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDK 180
           YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKV+EIEEQNRPGGNDK
Sbjct: 121 YFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDK 180

Query: 181 WKIRGHHSRKRAKDRRN 197
           WKIRG  SRKRAK+RRN
Sbjct: 181 WKIRGRQSRKRAKERRN 197

[Close]

BLAST of Chy11G203780 vs. TAIR 10
Match: AT5G30495.2 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-59
Identity = 116/200 (58.00%), Postives = 153/200 (76.50%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQA---ENGLVWKSNSELVDGLFVPPNN 60
           M++ KP+IGL+WEPKLP  S  +  KTC  S+ +    E+  +W S SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLPGLS--LDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKT 120
           PKK+NK++RKQ+ DT G NWFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+ K 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 LPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGG 180
             KYFQ+GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIEE++R   
Sbjct: 121 AEKYFQIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVT 180

Query: 181 NDKWKIRGHHSRKRAKDRRN 198
           N KWK +G+ +  + K RRN
Sbjct: 181 NKKWKKKGNQTTNK-KQRRN 196

[Close]

BLAST of Chy11G203780 vs. TAIR 10
Match: AT5G30495.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-59
Identity = 116/200 (58.00%), Postives = 153/200 (76.50%), Query Frame = 0


Query: 1   MSKRKPIIGLSWEPKLPASSSGIKAKTCDKSNSQA---ENGLVWKSNSELVDGLFVPPNN 60
           M++ KP+IGL+WEPKLP  S  +  KTC  S+ +    E+  +W S SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLPGLS--LDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 61  PKKLNKLLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKT 120
           PKK+NK++RKQ+ DT G NWFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+ K 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 121 LPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGG 180
             KYFQ+GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIEE++R   
Sbjct: 121 AEKYFQIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVT 180

Query: 181 NDKWKIRGHHSRKRAKDRRN 198
           N KWK +G+ +  + K RRN
Sbjct: 181 NKKWKKKGNQTTNK-KQRRN 196

[Close]

BLAST of Chy11G203780 vs. TAIR 10
Match: AT1G54770.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 208.8 bits (530), Expect = 4.1e-54
Identity = 112/194 (57.73%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 4   RKPIIGLSWEPKLPASSSGIKAKTCDKSNSQAENGLVWKSNSELVDGLFVPPNNPKKLNK 63
           ++P+IGL WEPKLP  S  +  KT    +  AE+     S SELVDGL +PPN+P+K+NK
Sbjct: 5   KQPLIGLKWEPKLPGLS--LDLKTGSTRSKTAES-----SKSELVDGLCLPPNDPRKINK 64

Query: 64  LLRKQVSDTAGRNWFDMPAKTMTPEVEKDLRLLKLRSVIDPKRHYKKGDSKLKTLPKYFQ 123
           ++RKQ+ DT G NWFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+ K   KYFQ
Sbjct: 65  MIRKQLKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPALHYKKSVSRSKLAEKYFQ 124

Query: 124 VGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVREIEEQNRPGGNDKWKI 183
           +GTV+E + +F+ GRLTKK RKATLADEL+SD     YRKRKVREIEE++R   N KW  
Sbjct: 125 IGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAVTNKKWNK 184

Query: 184 RGHHSRKRAKDRRN 198
           +G+ S K  K RRN
Sbjct: 185 KGNQS-KNTKPRRN 189

The following BLAST results are available for this feature:

BLAST of Chy11G203780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42877	7.9e-26	46.15	rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
Q5QJE6	8.1e-23	47.06	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=96...	[more]
Q8R2M2	4.0e-22	43.85	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10...	[more]
Q0P5H2	5.3e-22	45.38	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913...	[more]
Q12035	5.1e-17	35.00	rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of Chy11G203780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9M7	4.4e-104	98.98	Fcf2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G094730 PE=4 S...	[more]
A0A1S3CB58	1.4e-102	96.95	rRNA-processing protein fcf2 OS=Cucumis melo OX=3656 GN=LOC103498854 PE=4 SV=1	[more]
A0A6J1H9T2	4.4e-96	91.37	rRNA-processing protein fcf2-like OS=Cucurbita moschata OX=3662 GN=LOC111460917 ...	[more]
A0A6J1KU17	7.5e-96	90.86	rRNA-processing protein fcf2-like OS=Cucurbita maxima OX=3661 GN=LOC111498206 PE...	[more]
A0A6J1DMD6	5.4e-94	89.34	rRNA-processing protein fcf2 OS=Momordica charantia OX=3673 GN=LOC111022552 PE=4...	[more]

BLAST of Chy11G203780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656806.1	9.47e-135	98.98	rRNA-processing protein fcf2 [Cucumis sativus] >KGN46455.1 hypothetical protein ...	[more]
XP_008459856.1	9.09e-133	96.95	PREDICTED: rRNA-processing protein fcf2 [Cucumis melo]	[more]
XP_038876081.1	6.88e-128	93.40	rRNA-processing protein fcf2 [Benincasa hispida] >XP_038876082.1 rRNA-processing...	[more]
KAG6592956.1	1.55e-124	91.37	hypothetical protein SDJN03_12432, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960049.1	3.14e-124	91.37	rRNA-processing protein fcf2-like [Cucurbita moschata]	[more]

BLAST of Chy11G203780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30495.2	3.2e-59	58.00	Fcf2 pre-rRNA processing protein	[more]
AT5G30495.1	3.2e-59	58.00	Fcf2 pre-rRNA processing protein	[more]
AT1G54770.1	4.1e-54	57.73	Fcf2 pre-rRNA processing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014810	Fcf2 pre-rRNA processing, C-terminal	PFAM	PF08698	Fcf2	coord: 71..165 e-value: 1.6E-37 score: 127.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..182
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..197
IPR039883	Fcf2/DNTTIP2	PANTHER	PTHR21686	UNCHARACTERIZED	coord: 3..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G203780.1	Chy11G203780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005730	nucleolus