Chy11G203420 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G203420
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RGG repeats nuclear RNA binding protein A-like
Location	chrH11: 24011895 .. 24022487 (-)
RNA-Seq Expression	Chy11G203420
Synteny	Chy11G203420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACCCTTAATCCTTTTGATTTGTTGGGGGATGATGATGCTGAGGATCCCTCTCAGCTAATTGCGGCTAAGGTGGCGGCGGTGGCCACGGCGCCGCTGTCTAAGAAAGCGCCTGCTCAGACCAAACCCCTCCCTTCTGGGGCCCAACTGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGGTAAGATTCTTCGTTTCTTAATTTTTGGTTTCGTTTTGAATATTTTTGTTTTTTTAGAAGTATCCCTTTGGTCGATTGATTTTACATTTTTCAGATAATGTTTATTCGCTTCGGTTTTAGGTGTTTGTTTTTCTGATTTAATTCTACGTAAGAGTGAAGGATGGTAATTGTTTTTAATTTGGTTGGAGTGTTGAAAATTTCCTCTTTTTTTTTTTTTCTCAAAAGATTTGTGGGATGGAATTGTTGGCTTCGTTTTATTGTGTGTTTGGCAGTTGAATTTTGTTTGTAACTTAGATAATACCCAATGAGTTGTTTGTTTTGGTACTGTGATTGGAGGATTAAGGTATTGAAAGTATCGATACCATTGCTTTTGGCTGAAATCTGATGTCTGAAATGCAGTTGTGAATAAATTAATTTTATTTTAATGTTTCAAGGCTTAAATAAGATTTTGTTTTCTTACCATGATATGTTATTTTTCTTCACGTTCATTCTTAATAATCATCTACTGATAGCAGTTGAACATTACCAAGTTGAATTTGTGATTGTTTATCGATTTGGGGTCTTTTTTGGGAACTTGGGACTGTGCAAACAATTCTTCATTATCATACCAGTAATCTTTTTTTTTTTGTCTTTTTTCGTCCTGTTGGATTATAATTTACCGACCTACTATTGTTTAACCGTCAAATTCTTGTGAGTGTCCACTGAAACGAATTATCCATTAAGTGATTGAGATAATCTTTTTATTACTTTGTGTAGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGGGGATATGGGTATGGGCGAGGTCGCGAGGGTGGTGGGTTTAATCGAGACTCTACCAATAATGAGAACATTAATGCACCTGAAGATGGAGTGGGTGGTAAGACATCTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGAGGTGGTTTCAATGATGGAGAAGGTGCTGAAGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGCCGTGGGTAAGTGTCTGTTTTCTGTTCTTTTAAATTTTATTGTGCACACTCCTGATGTATATTCTACGCTGTTTTGACGCTTTATTCCTGATTTTATGCCTAGAAATGAATTTAAACGAGAAGGGTCTGGTCGTGGAAACTGGGGAAGGTCAACTGACGAATTTGCTGAGTAAGTACATGTGTATACCTTCAATCTTCATGCGTGTCTTTTTCCAGGTATTATGTGTAATTGTGCGTACATGAGCCTTCTTCTCAATCCTTCTCATAGAAGCTGCCAGGTTGGCTTGAAGACAAATTTATATGGTCAGGCATTCCTTTCTCAATATGTGGAAGATGCTCTCAACCACATCATATACAGGGAGCTTGGCTAACTTCATTTTTCTTTTCAGGGAGAGGGTTGCATTTTTATGCTCATGTTATTATCTCTTGTATGCTAATAAGATTGTTCCCTCCTTGACAACTAGTTATACCTAAAATTTCTGTTTTATATTTAGGGTAGCAGGGGAAACCGTTAATGAAACTGAAAAGAATGTGGGTGACGAGAAGCCTATTCAAGAGGATGATACATCAGGTGTGAACACGGAGAACCCTGCTAAAGAACCAGAGGAAACCGAACCAGAAGACAAGGTTAGTATCTTCAGATTTTAGTAAGCTTCCCATAAATGTGGGACCTACTATCTCACTTGTCTTTGATTTTCTTCTGGCTGAAAAGCAACTTGTAGTTTTGCTTGCATGTCAAGTTGAACGGGCTTTATTACTTCACTTCTAGTAGCATAAATTTGATACGTGTAGCAGTTGTAAATTTGAATGCGTATATCAATCTGATGGGCTTGGGTTGCGAAGTCTTTTGTACTGTTTGACTTGATTTTGAATCTAATGTACTATTTTTTTTTTTCGATGTAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGATAAAAGGAAGGCCCTTCTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATATTTATTAAATTGGTACACCTACTTAACACTCTTTCGCTGTTGATATATCCCCTATGGGATCTGATGACCCTTGGCCTTGCATTAAATGAGGACTTGGCAGTTTTATCTCATTTGTTAACCCACTTGTAGGGATCTGAAAAGGATAAGCGAAAAGAAATGGCAGATAAAGAGGAGAGAACTAAGAAGGTATTATTATCTCATCTTCTTTAAATATTTCTGCCTTTTGAATTGTTTACTCGGGTTTTACCCTACGCCTGGCAAAATTTTAAAAGTCTTAGGGCAGCCACCAGCTTTTGTTTTCCTTAGTGACGCAAGTGCAAGTATTTAGCCATAAATCTCATTTTGAACATAAAAATTAATGCATAACACAACTCATAGTAAAAGATAAAATGAAAAATCTCAATTTCCGATCAATATACATTAGTTTTCATGAGTTATTATTCATCTAAGATCATTCTCATAATGGAGAAACAAAACTGGAAAGACTGAAATTTTGCCTTGCCCCAAGAAGATAAACAATGCGACTCTAGACTCTAGACCCTACGAGCCTATATTTTTTCCAAAGTTGTTTTGATGAATTGAATGAACAAAGAAAAAGAGACAAAAATGAAATAGTAAACGAGGAAAGGAAAAAAAATCGAGAGAAAGAACAGACCTTTTAGGTTTTGTCTCGTCTCTTAGCGACCCAAACACCTTTCCCACCTACAAAGGAAGACAAAATTATGGCTGTCTTTTAGTGTGACCTGTTACTTTTCAGGCAAAAATTATTGAGTTTTATACTTCAGATAATGTGCAAGTTGTTTGTTTTAGTGACAAATAAATGCTGTCTTTTCGGCACTCATCCCACTAAACACAGACCCACAACCTGACACTAGTACTACTTAAAATTTTCTCCAAAGTCAATTATGTATGAAGCATATGCTTTCCACGTTTCAATAGTGTAACCATGGAGGAACGTGCCTCTTGTTCAACATAAATAAAGGCTACTTCTGTTCTAACGCAGTCTAACTTCAGAAACCTTCTATCCTTGAGGCATGAGCCTTACATTTTGAAAATGTTGATGTCCGCCAGCACATAGGATGCTCTTTATTGGGTTTATTCCGAACCTACCTTAAGAAATTTAATTGAATTACTTTTTCTTTTAAGAATATTATATCAATGGTTGAAATATGCACTGATGACCTATTAGCGTAGGTAGAGGTGACGGCATTGTGAGCCCATGCTGAGGCTGACCGGAAGAAATTGAATATGATAATATTACTCAATTTTTAGAACCATTATTAGAGGAAACTAAGGTTATTTTAAATTGTGCTTTGATAAATTTTATTTGGCAAAATGATTTTGCAATGAAATCATCCTTCAATTTGATTACAGTAGACTTCCAAAGAATGAATTTAATGCGTTAAAGTACTATTTATTCCAAATGATAGAATTTGCTTCCAAATATTTTTTTATACAAATCTTTGGTTCAACTTCTAATTAGGCTCATATCAGCATAAAGGAGATTTTATCTTGCTTGCCATACAACATTGTTTTGGCCCTTCTAGAACCTGTAAAAGGTTAAATGACTGATGTTTTTCTTCTTCACTTGTTAGTCTTTGAGTATTAACGAGTTTTTGAGGCCTGCGGAAGGAGAGCGTCACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGACGTGGTTCAAGGGGAGGATACAGTGGCAGCACGATGAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCAACCTTAGGTGCGAAGTAAATTTCGCAAATAAATTTTCCCTTACAAAACTGTGTTTTTGATCTGGGGCAGGAAACTGACTAGAATAATATAGTCTCTCCTGTATCAAAATGATTTTTAAGTTTAATTTGTTTAGGTGTAAATTGTCAAAGTCCTTGTATTTTCCCTTGTCCACCTTTCTTTGTGTGTTTTCAACTGTTGTTTCAAGACTGTTTGCCAGATCAAACTGTTTATTTATGGACTTCCTTCTTCCCCATCTAAATTTGGCATTTTGTTTTTCATTTGTTGCCCTTCATTTGTTCCGATAATTGCTTTTTACTATTTGTCAAGTATATGGAATGAATTTTCCTTCTGAAAGAATCTAATTGAATGTAAAATAAACTAAGGTCCGTTTGATAAGCAACCGTTTGTTTAAAATAGTTAAGTTTATCTACACACTTGTCATTTTATTGAAGTAAGAAATTTCGTTCTCTCTACTCTTTTCAATTTGTTACACCTTGTGCATGATCCATATTGGCACTGTTTGTTTTTAATTAAACCTAAATTTAATTGTTAGTTTAAACTAATCTTTTGTGTGTTTTATTTCTCGGATTTTCTATACTAAATGTGTAAGCTATGGATTCCTCTACATACGCTTCTTGTTCAATGACTTCATCTTTAACCATTGATCATGACTTACGCATCATGAAGCTAAGATAGATCATTCACTCTTGGTCTTATATTTTTCCACATTGATTGATGCCTTTAAATCAAAAGTTTTCCAAAAATATCATCGATCACTAGTCAAAAGGGTGTAGAAGTTGTTAAACTTGACATTTGGAGGCCTTGATAAAGTTGATAAAGTAATCATTCATGGGTGAATGAGAAAAAAAGGATGGAAATTTGTCGTCTCTTGTTTGAGATTCCAACCAAACCCACCAAGTAACTTAGGACTTTTTTTCAAAATGATAATATATCATCATTAATCTACAAGTGTTACTTGTAATTACAATAACTAACTAAAGAAAACGAAACTTTACTTTTTCTTACAGAAAAATGGTAATATATCAACATTAGTCTACAAGTGTTACTTATAATTATAATAACTAACTAAATAACTAACTAAAGAAAACGAAACTAAGAAAATGTCACAACTAACTATATAACGATGATATTTTATTTAAAAAGTATCATCCTCTGATCTTTCTTTGAATAAAACGAGTATAGTCAACTCTTTCGAAAATATCATTCTCAATCAACATTAGCAATATCATTCTCAATCGATGTTAGCACTGACCGATTAATTTTATGTTTTTAAAAATAAAGATACAATAAAAACACATCAATTTTTAAAAAATACAATATGATAAAATTTAAGTGATAGATGTGGATATATATATATATATATTGATATATGAAATGGAATATGATATATTATAAATAAACAAATAAGTGAAGGTATAAGTTATAGTATATTGTTGCGACACCACACGAGGGAGGATATATAGAAACGGTCGAACAACGCAAAATAACTATATGCGTTTATCTATTGAGTTGGCTCTTCGTTTGCACTTACACTCACTCGGCCATTGCGGCTAGGGTTTTCTCCCAGTTTCTACCGCTTTACGATTCGATCTTTTTTTTTTTTTTTTTCCTCTCTTTTTACAGATCTTCTTCATAGATTCATCATGGAGTTCTTGTTGTTAAGGTAGGATTTCGTGGTCGCCTTTCACGGAGTGCAATTTCTTTTCAGCTTTTCCGGTATTGGTTTTAATATAGTTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGATGCTGAGGACCCATCGCAGCTAATGGCTGTCAAGCAGGCTGCAGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCTAGACAACAGGCGGCTGCGGCAGCTAAATTGAGTAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCGCCTGCTCAGGCTGGTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAATTGGATGTTATTGATTGTGTAAATATCAGAGTTCGATTTTGATGTATAGTTTTCTTCCTTTTGTTTTCCTGTCTAGGTTGATTGGTTTTGCATTCCGTGATTTTTGTTGTTGTTTTGTTAAAGTTTTTTGTCTGCTTGTTTGCATGGTTACATTGTTTGCGCCTATGGAAGAGTGCGAAGTCTTTCTTTGTGATGTTAGATATATACATACACGTAGGAGTGAGAAATTTTAAATTCAGTCAAAATTTTGTAAGCTATATAATTACTTTTTGAGATACCCGGCTGGGATTTATTGTGTATTCCTACAATCCAAGGCTCTGCATTCCAAATTTATTTGGAATTCAGATATATTCAATGGTTTGTATGTTTGGAACATAAATGGAATTGAGTTATGAATATTTTTAAAAAAATTTTTTGGAAGAAATTCGAGTGTCAGTCAGCAATGTTGTGATTTTATAACGTACTAGGTTATGAATTTTGTCTGTACATTGTTTAGATAGCATTTTCTTTATTCTTATTATGCCATTTTTCCTTTGTGTGTGGCAATTGAAAGAATTTGAATATTTTGATAATTTATGTACAAGTCTTTTAAAAAAGAACCTAGCTTTCGTTGAGAAATATGAAGAATGTATTAGGGCATACCAAAAACCCTCCAAAAAGAGTTCCCAGTCCTAATAGTGAGAAAGGACCCAATCGAAGAATGAGACCAAGTTAGTAATCACAAAAGCCTGATTAACGGATGTTCATAATGAAGATTTATAACCAACTCCCTATTGTTCCTCTCCAACCAAGTACTTCATAAAATGGCAAAAATAGCTAGCCAGCTACTGCCACATAACTATTCATTTATCACGATTCACAACAAGGAGGAGGGTTCATAAGCATTTCCTTGGTCACCCCAAACATGAGCCAAATCAAAGCAAATTTTTTTAAGAAAGAACTGTTCTACAGGGGCAATCCAACATGAGATGGTTGAGGTTCTCCTCTAACTTCCGGCAAAGAATGCCATTAGTCCATTACAGGTGCAACAGTAAGATCAAGATGAGTGCCTTGGTAGATGGTCCTGCATGCTCACTATCCCAAGCTGTCATGGAGAACTGCTAGACATTACTTTCACTTTTTCTTGTCCTAAAAGAAAAAGAAAAAAAGGAATAATGAGTGGAAATGGGTTTTCCCCCCTCCCAAGTATCCTAAAAAATCAAGTACACTAAATAGTTTGAACTGGGATAACAATTAGCAAAGGAAAGCTCGAAGCAATAACAGTCTGGTGGTGTTCTCTAGAATCTTTAAAACTACAACTTGAACTCCACCTAGAAGGCTATGGTCCATAGTTGCTCAGAAGGCTATGCATGTGTTACAGACTTATGAAAAAATGTCAACCATTTTGCTAACGAGTCTCATTATGCAAACTCAGGTTGCCAATGCCTAAACCCTCTAGATCAACTAATTTTGACACAACCCCCCCAACCCTTATTTACTCCTTCCCACAAGATGTTTCTTATGAATCTTTCATTTTTCTTACTGATTGAGACAAGCATTCTAAGCATGCAAGGAAGGTAGATTGGGATCCTACTCAACACTAATTGGATTGATGTAAGCTTCCCCCCCTAAGAAAGGCATTTCTCTGTGGTTTTTGAATTTTCAGTAGGTCCCAAGAAGGCAAACTATTTATTTTGATTACAATTACCCGGCCCCAAGGGAAGTCCAAGGTGGGAACAGGGAAGCTGACTCACCTCACTTTTGAGCAAAATTAGACCCAAGAGGACAAACTTAGAAGGCTCACAATTTAGACCAATGATGGAGGTTTGCACTCTATTGATTTTAAGGCTTGAGATATGTTCAAAGGACAAGAAACCACTAAGATTCATAAAGGAACTATGCAATTGCTATATATTATATATATATATATTGACAATATCCAATTGGTATAATTTATGCACAAGTTCAATTGAAATGTTTTGGTTGGCCTTGATATGTGTTCTTTTGTATTATTTTCTTGATGAAAGGTTCTTGTTTTCAATATTTAACTTGAAGAGGAATTGATGTATTTGATTTCTTCGTATGATTTCTTGATGGAAATTTCCATTTTTTTCCTAAAGAAGTCATGTTTTGGAGGAACAAATTGTAGGACTGTGTGAACAAATATTTGCATGTATGCCCAAATCGTGGGCTGTTGTAAAGAACTGGTTTGTCTCTGTATTGTATTTTTAAATATTCCTGGTTCTTAATATAGGACTTGGTAGTCTGCAGTCAATTTTTTATTCCATCTTGAACATAGCTTTGTCTTGTATCATATTGCCCATATTACGCTATTATTTATCAACAGAGTCTTCCTTATTCTATTGGGTTCTTATGAGTGTCTTGATTCCTGCCCAATTGTTATCAATTATCCATTGGGTATCTGAAAGGATTTTTTTTTAATTATCTTTTTTAATACTTTGAGTAGTAAGGGATGGTCGTGGAGGTAGTGGTAGTGGCCGTGGTGGACGTGGATATGGACGAGGACGTGGCAGTGGTGGTTTTAATCGCGAGTCTCCCAACAATGAGTACTCATTTAGTAGTAACCCTGAAGATGGAGAAACTGGAAGGACGACAGAAAAACGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTTATAATGTAGATACTGCTGATGGTGAACGCCCTCGTGGTGCATTTGAACGGCACAGTGGAACTGGCCGTGGGTGAGTGTTCTTTTTTCAATAAAACATCAGCTTACGCTATGCATCTATATCTTCTACTCTGTTTTGACATCTTCAGCCTGTTTTATACCCAGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGGAACTGGGGAAGGTCGGCTGAGGAATTTCCTGAGTAAGCACATCCCTATGTTTTGGATGTTTCTGTATGTGTGGCCTGGTTCTTTTCTTTTCTCCTATAATGTTTGGCTGGGGTGGGGAAGGCTGGGAGGCAGATGTTACGGGAAGTTGTATGCATGTTCGAACTCTTGTATGCTAAGAGGCTAGCTTGTTTTGCATACAGGGTTGCTGAGGAAGCTAATGAATCTCAGAAGTTAGGTGATGAGAAGCCTGTTCATGAGGATGATACTGCAGGTGTCAACACAGAGAACACTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGTTTGTGTTGTCAGGTTTTTTGGTAGACTTCACTTAAACTGCAGCCTACCATTTCACTTGCCATTTGTTTTTCTTGTTAACTGAAAATTAATTTGTAGTTTTGCTTGCTTATCAAACAAATTGAATGGGCATTGATAGCCGGAGTAGTAGTAATACACTGGTGGGTTAGTATTATGAACTTCGCTCTATGTTGAACATGATTTTGAATCTGCCGTGTACTGTTTCTTTTTCCTTGATACAGGAAATGACTCTGGAGGAGTACGAAAAATTACTGGAAGAGAAAAGGAAGTCTCTTTTGGCACTGAAAACTGAAGAGAGGAAAGTGGATCCTAAAGAATTTGCATCCTTGCAACAGCTATCAAGCAAAAAGGAAAACCAGGACATCTTTATTAAATTGGTACATCTATTTAGTCTTCCTTTGGAGTTGCAATTATATATTGATATTGTTCTGATGGATGACCCTTGGCTCCTTGATATATTGGTATGGTCTTGGACATGGCCGCTGAATCTTCATTTCACCATTTGTAGGGATCTGACAAGGATAAGCGAAAAGAAACTGCAGAAAAGGAGGAAAGAACTAAGAAGGTATTTCCTCTTGTGTATTACATGATTTCCTGTCCATTACATTGGTTTTTAAATTTTAGTTCTCAAACGAAGAAAAATGTTCTATTGTGATGCTTTTTGCTGCTTCAATTTGTCACCAATTGAATGACGAAATCGAAGTGTGCATACTTCGTCTAATTTACTTGTGTTCTGTGGATACACTCTCCTGTTTGGATCAAAGCTTAAAAGAGAGGGAGTTTTGGCCATCAGTTCAACATCCTAACTCAGATTTAGTTGGTGAAATTTGTGGTAAGGAAAATTGAGTTTTACGACCTCACCTGAACGATGATCCTTCTCTAGATTTTTCAATCGTGTCTTTGAGTTATAAGGAGAATGGGGTGTTGGGTTCTTCAAGGAAACTTGGTTTTGGCGATTGGCTTAGGAGGCCAAACTCATGCTCCTAAAATGCCTAAAAAATTTACGAGCTACAGCTAAGAAACAAGTTCGTTTATGAATTGAAGGTTTTAAAACAACATTTCCGTTATTGTAACCTAAATTCTGCTCATACTCAAATAATTTAATGATAAAAAAAGTACTGATTTTTCTGTTGTTTTCTTTCTTCTATTTTTGTAGTCCGTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAAACACTACACTCCAGGTGGTCGGGGTAGAGGCCGGGGCCGTGGTTCAAGGGGAGGAGGTTACGTCGGCAGCTCGATGAGCAGCAATGTTGCAGCCCCATCGATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCAAAATGA

mRNA sequence

ATGACCACCCTTAATCCTTTTGATTTGTTGGGGGATGATGATGCTGAGGATCCCTCTCAGCTAATTGCGGCTAAGGTGGCGGCGGTGGCCACGGCGCCGCTGTCTAAGAAAGCGCCTGCTCAGACCAAACCCCTCCCTTCTGGGGCCCAACTGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGGGGATATGGGTATGGGCGAGGTCGCGAGGGTGGTGGGTTTAATCGAGACTCTACCAATAATGAGAACATTAATGCACCTGAAGATGGAGTGGGTGGTAAGACATCTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGAGGTGGTTTCAATGATGGAGAAGGTGCTGAAGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGCCGTGGAAATGAATTTAAACGAGAAGGGTCTGGTCGTGGAAACTGGGGAAGGTCAACTGACGAATTTGCTGAGGTAGCAGGGGAAACCGTTAATGAAACTGAAAAGAATGTGGGTGACGAGAAGCCTATTCAAGAGGATGATACATCAGGTGTGAACACGGAGAACCCTGCTAAAGAACCAGAGGAAACCGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGATAAAAGGAAGGCCCTTCTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATATTTATTAAATTGGGATCTGAAAAGGATAAGCGAAAAGAAATGGCAGATAAAGAGGAGAGAACTAAGAAGTCTTTGAGTATTAACGAGTTTTTGAGGCCTGCGGAAGGAGAGCGTCACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGACGTGGTTCAAGGGGAGGATACAGTGGCAGCACGATGAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCAACCTTAGGTGCGAATTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGATGCTGAGGACCCATCGCAGCTAATGGCTGTCAAGCAGGCTGCAGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCTAGACAACAGGCGGCTGCGGCAGCTAAATTGAGTAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCGCCTGCTCAGGCTGTAAGGGATGGTCGTGGAGGTAGTGGTAGTGGCCGTGGTGGACGTGGATATGGACGAGGACGTGGCAGTGGTGGTTTTAATCGCGAGTCTCCCAACAATGAGTACTCATTTAGTAGTAACCCTGAAGATGGAGAAACTGGAAGGACGACAGAAAAACGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTTATAATGTAGATACTGCTGATGGTGAACGCCCTCGTGGTGCATTTGAACGGCACAGTGGAACTGGCCGTGGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGGAACTGGGGAAGGTCGGCTGAGGAATTTCCTGAGGTTGCTGAGGAAGCTAATGAATCTCAGAAGTTAGGTGATGAGAAGCCTGTTCATGAGGATGATACTGCAGGTGTCAACACAGAGAACACTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTACGAAAAATTACTGGAAGAGAAAAGGAAGTCTCTTTTGGCACTGAAAACTGAAGAGAGGAAAGTGGATCCTAAAGAATTTGCATCCTTGCAACAGCTATCAAGCAAAAAGGAAAACCAGGACATCTTTATTAAATTGGGATCTGACAAGGATAAGCGAAAAGAAACTGCAGAAAAGGAGGAAAGAACTAAGAAGTCCGTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAAACACTACACTCCAGGTGGTCGGGGTAGAGGCCGGGGCCGTGGTTCAAGGGGAGGAGGTTACGTCGGCAGCTCGATGAGCAGCAATGTTGCAGCCCCATCGATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCAAAATGA

Coding sequence (CDS)

ATGACCACCCTTAATCCTTTTGATTTGTTGGGGGATGATGATGCTGAGGATCCCTCTCAGCTAATTGCGGCTAAGGTGGCGGCGGTGGCCACGGCGCCGCTGTCTAAGAAAGCGCCTGCTCAGACCAAACCCCTCCCTTCTGGGGCCCAACTGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGGGGATATGGGTATGGGCGAGGTCGCGAGGGTGGTGGGTTTAATCGAGACTCTACCAATAATGAGAACATTAATGCACCTGAAGATGGAGTGGGTGGTAAGACATCTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGAGGTGGTTTCAATGATGGAGAAGGTGCTGAAGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGCCGTGGAAATGAATTTAAACGAGAAGGGTCTGGTCGTGGAAACTGGGGAAGGTCAACTGACGAATTTGCTGAGGTAGCAGGGGAAACCGTTAATGAAACTGAAAAGAATGTGGGTGACGAGAAGCCTATTCAAGAGGATGATACATCAGGTGTGAACACGGAGAACCCTGCTAAAGAACCAGAGGAAACCGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGATAAAAGGAAGGCCCTTCTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATATTTATTAAATTGGGATCTGAAAAGGATAAGCGAAAAGAAATGGCAGATAAAGAGGAGAGAACTAAGAAGTCTTTGAGTATTAACGAGTTTTTGAGGCCTGCGGAAGGAGAGCGTCACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGACGTGGTTCAAGGGGAGGATACAGTGGCAGCACGATGAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCAACCTTAGGTGCGAATTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGAGATGACGATGCTGAGGACCCATCGCAGCTAATGGCTGTCAAGCAGGCTGCAGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCTAGACAACAGGCGGCTGCGGCAGCTAAATTGAGTAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCGCCTGCTCAGGCTGTAAGGGATGGTCGTGGAGGTAGTGGTAGTGGCCGTGGTGGACGTGGATATGGACGAGGACGTGGCAGTGGTGGTTTTAATCGCGAGTCTCCCAACAATGAGTACTCATTTAGTAGTAACCCTGAAGATGGAGAAACTGGAAGGACGACAGAAAAACGTGGTGGATATGGTGGACCTCGTGGTCGTGGTGGCCGTCGTGGTGGTTTTTATAATGTAGATACTGCTGATGGTGAACGCCCTCGTGGTGCATTTGAACGGCACAGTGGAACTGGCCGTGGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGGAACTGGGGAAGGTCGGCTGAGGAATTTCCTGAGGTTGCTGAGGAAGCTAATGAATCTCAGAAGTTAGGTGATGAGAAGCCTGTTCATGAGGATGATACTGCAGGTGTCAACACAGAGAACACTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTACGAAAAATTACTGGAAGAGAAAAGGAAGTCTCTTTTGGCACTGAAAACTGAAGAGAGGAAAGTGGATCCTAAAGAATTTGCATCCTTGCAACAGCTATCAAGCAAAAAGGAAAACCAGGACATCTTTATTAAATTGGGATCTGACAAGGATAAGCGAAAAGAAACTGCAGAAAAGGAGGAAAGAACTAAGAAGTCCGTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAAACACTACACTCCAGGTGGTCGGGGTAGAGGCCGGGGCCGTGGTTCAAGGGGAGGAGGTTACGTCGGCAGCTCGATGAGCAGCAATGTTGCAGCCCCATCGATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCAAAATGA

Protein sequence

MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSKPLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGGKTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERTKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLGANSEMATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSKPLPPAQAVRDGRGGSGSGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRSAEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAEKEERTKKSVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK*

Homology

[Close]

BLAST of Chy11G203420 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.7e-74
Identity = 209/373 (56.03%), Postives = 251/373 (67.29%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQL-MAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSK 423
           MAT NPFDLL DDDAEDPSQL +A+++   + K G        Q ++    S P  LPSK
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKSKKSG--------QVSSLPAKSAP-KLPSK 60

Query: 424 PLPPAQAVRDGRGGSGSGRGGRGYGRGRGSGGFNRESPNNEYS--FSSNPEDGETGRTT- 483
           PLPPAQAVR+ R  +  G GGRG G  RG GG+NR+  NN YS  ++    +G+  +++ 
Sbjct: 61  PLPPAQAVREARSDAPRGGGGRG-GFNRGRGGYNRDDGNNGYSGGYTKPSGEGDVSKSSY 120

Query: 484 EKRGGYGGPRGR---------GGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGS 543
           E+RGG G PRG          GGRRGGF N +  DGERPR AFER SGTGRG++FKR+GS
Sbjct: 121 ERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGS 180

Query: 544 GRGNWGRSAEEFPEVAEEAN--ESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEM 603
           GRGNWG   EE     E     E++K   EKP  +D  A  N E+T    EEKEPEDKEM
Sbjct: 181 GRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKEDTV--VEEKEPEDKEM 240

Query: 604 TLEEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKET 663
           TL+EYEK+LEEK+K+L +L T ERKVD K F S+QQLS+KK N +IFIKLGSDKDKRK+ 
Sbjct: 241 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 300

Query: 664 AEKEERTKKSVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSS---NVAAPS 719
            +KEE+ KK+VSINEFLKPAEG  +Y  GGRG GRGRG RG G V S  S    N AAP+
Sbjct: 301 -DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNEAAPA 355

[Close]

BLAST of Chy11G203420 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.5e-66
Identity = 180/303 (59.41%), Postives = 214/303 (70.63%), Query Frame = 0


Query: 78  GGRGSGRGGGRGYGYGRGREGGGFNRDSTNNEN-----------INAPEDGVGGKTSERR 137
           GGRG  RGGGRG G GRGR   GFN++S ++EN               EDG  GK SERR
Sbjct: 3   GGRGGPRGGGRGRGPGRGR---GFNQESADDENAFGSNNGFSGRYRVQEDGESGKLSERR 62

Query: 138 -GYGGPRG--RGGRRGGFNDGEGA--EGERPRRAFERHSGTGRGNEF-KREGSGRGNWGR 197
            GYGGPRG   GGRRGGFN+G+ A  EGERPRR F+R SGTGRGNE+ KREGSGRGNWG 
Sbjct: 63  GGYGGPRGGFHGGRRGGFNNGDAAEGEGERPRRVFDRRSGTGRGNEYIKREGSGRGNWGT 122

Query: 198 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 257
             D+ A+     VN+ EK V  EK   +++    N ++ A EPEE EPE+KEMTLEEYEK
Sbjct: 123 PADDIAQETEVPVNDGEKIVEAEKEAGQEEAEDTNKDSTAAEPEEKEPEEKEMTLEEYEK 182

Query: 258 LLEDKRKALLALKTEERKVD-PKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEER 317
           L+E+KRKALLALK EERKV+  KE  SMQ LS+KK++++IFIKLGSEK+KRKE  +K  +
Sbjct: 183 LMEEKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAVEKARK 242

Query: 318 TKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSN--VAAPSIEDPGQFPT 361
           T+   SINEFL+PAEGE +   GGRGRG GRG RGG+ G    N   +APSIED GQFP+
Sbjct: 243 TQ---SINEFLKPAEGENYSRRGGRGRGPGRG-RGGFGGGVGGNKSFSAPSIEDVGQFPS 298

[Close]

BLAST of Chy11G203420 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 7.7e-63
Identity = 190/386 (49.22%), Postives = 238/386 (61.66%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M ++NPFDLL DDDAEDPSQ++A+K       PL   AP QT          K   +P+K
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK-------PLKVVAPVQTA---------KSGKMPTK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           P PP+QAVRE+RN       G GRG GRG  YGRG  GG  NRDS NN+   A E+G GG
Sbjct: 61  PPPPSQAVREARN-----APGGGRGAGRGGSYGRGGRGGN-NRDSRNNDG-PANENGYGG 120

Query: 121 ---KTSERRG--YGGPRG--RGGRRGGF-NDGEGAEGERPRRAFERHSGTGRGNEFKREG 180
              ++ E  G   GGP G  RG RRG + N G+  + ERPR+ ++RHS T  GNE KR+G
Sbjct: 121 GYRRSEEGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDG 180

Query: 181 SGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKE 240
           +GR NWG + D+   V  E+    +KN+  EK   E + +    E PA++ EE +PEDKE
Sbjct: 181 AGRANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKE 240

Query: 241 MTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNND-IFIKLGSEKDKRK 300
           MTLEEYEK+LE+K+KAL A K EERKVD K F +MQQLSSKK NND +FIKLG+EKDKR 
Sbjct: 241 MTLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR- 300

Query: 301 EMADKEERTKKSLSINEFLRPAEGERHYAP-----GGR-------------GRGRGRGSR 360
            + ++EE+T+KSLSINEFL+PA+G+ +Y P     GGR             GR    G R
Sbjct: 301 -ITEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGR 359

[Close]

BLAST of Chy11G203420 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.6e-58
Identity = 179/374 (47.86%), Postives = 227/374 (60.70%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSKP 423
           MA+ NPFDLLG DDAEDPSQL                 Q  ++AAAA +  K A  P+KP
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALS------------QKVEKAAAAVQPPKAAKFPTKP 60

Query: 424 LPPAQAVRDGRGGSGSGRGGR----GYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRTT 483
            PP+QAVR+ R     GRGG     G+ RGRG+GG+NR++ NN+   + N   G   R +
Sbjct: 61  APPSQAVRESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPS 120

Query: 484 E------KRGGYGGPRGRGG----RRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREG 543
           E      + G  GG R  GG    RRGG  N ++ D ERP   ++RHS TG G   KR G
Sbjct: 121 EDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNG 180

Query: 544 SGRGNWGRSAEEFPEVAEEANESQKLGD--EKPVHEDDTAGVNTENTAKESEEKEPED-- 603
            GRGNWG + ++ P  +EE     +     EK   ED+T     E TA+E  +KE E+  
Sbjct: 181 GGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAE 240

Query: 604 -KEMTLEEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKE-NQDIFIKLGSDKD 663
            +EMTLEEYEK+LEEK+K+L A K EERKVD K F S+QQLS+KK  +++IFIKLGSDK+
Sbjct: 241 AREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKE 300

Query: 664 KRKETAEKEERTKKSVSINEFLKPAEGEKHYTPGGRGRGR-GRGSRGGGYVGSSMSSNVA 717
           KRK+  EK    KKS+SINEFLKPA+G+++   GG  RGR GRG RG G      +   A
Sbjct: 301 KRKDATEK---AKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEG-GNQRYAKEAA 357

[Close]

BLAST of Chy11G203420 vs. ExPASy TrEMBL
Match: A0A0A0K9Z4 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106180 PE=4 SV=1)

HSP 1 Score: 651.7 bits (1680), Expect = 3.5e-183
Identity = 356/360 (98.89%), Postives = 358/360 (99.44%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK
Sbjct: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG
Sbjct: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120

Query: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180
           KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR
Sbjct: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180

Query: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 240
           STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEP+ETEPEDKEMTLEEYEK
Sbjct: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300
           LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT
Sbjct: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLGA 360
           KKSLSINEFLRPA+GERHYAPGGRGRGRGRGSRGGYSGS MSNVAAPSI DPGQFPTLGA
Sbjct: 301 KKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVAAPSIGDPGQFPTLGA 360

[Close]

BLAST of Chy11G203420 vs. ExPASy TrEMBL
Match: A0A0A0KCI2 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G105680 PE=4 SV=1)

HSP 1 Score: 632.1 bits (1629), Expect = 2.8e-177
Identity = 347/360 (96.39%), Postives = 351/360 (97.50%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSKP 423
           MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQA+QQAAAAAKLSKPANLPSKP
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQAKQQAAAAAKLSKPANLPSKP 60

Query: 424 LPPAQAVRD-----GRGGSGSGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRT 483
           LPPAQAVR+     GRGG  SGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRT
Sbjct: 61  LPPAQAVREAKNEGGRGGRSSGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRT 120

Query: 484 TEKRGGYGGPRGRGGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRS 543
           TEKRGGYGGPRGRGGRRGGFYN DTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRS
Sbjct: 121 TEKRGGYGGPRGRGGRRGGFYNGDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRS 180

Query: 544 AEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLE 603
           AEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+
Sbjct: 181 AEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLD 240

Query: 604 EKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAEKEERTKKS 663
           EKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETA+KEERTKKS
Sbjct: 241 EKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKS 300

Query: 664 VSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 719
           VSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 301 VSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 360

[Close]

BLAST of Chy11G203420 vs. ExPASy TrEMBL
Match: A0A1S3CBH1 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498821 PE=4 SV=1)

HSP 1 Score: 628.2 bits (1619), Expect = 4.1e-176
Identity = 343/360 (95.28%), Postives = 351/360 (97.50%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M TLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKK PAQTKPLPSGAQ NKPASLPSK
Sbjct: 1   MATLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKGPAQTKPLPSGAQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDS N+ENINAPEDGVGG
Sbjct: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSANSENINAPEDGVGG 120

Query: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180
           KT+ERRGYGGPRGRGGRRGGFNDGE AEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR
Sbjct: 121 KTTERRGYGGPRGRGGRRGGFNDGENAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180

Query: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 240
           STDEFAEVA ETVNETEKNVGDEKPIQE+DTSG NT++PAKEPEETEPEDKEMTLEEYEK
Sbjct: 181 STDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300
           LLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKE+ADKEERT
Sbjct: 241 LLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLGA 360
           KKSLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYSGS+MSNVAAPSIEDPGQFP LGA
Sbjct: 301 KKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVAAPSIEDPGQFPILGA 360

[Close]

BLAST of Chy11G203420 vs. ExPASy TrEMBL
Match: A0A5A7TA33 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002670 PE=4 SV=1)

HSP 1 Score: 623.6 bits (1607), Expect = 1.0e-174
Identity = 343/361 (95.01%), Postives = 351/361 (97.23%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M TLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKK PAQTKPLPSGAQ NKPASLPSK
Sbjct: 1   MATLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKGPAQTKPLPSGAQQNKPASLPSK 60

Query: 61  PLPPAQA-VRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVG 120
           PLPPAQA VRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDS N+ENINAPEDGVG
Sbjct: 61  PLPPAQAVVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSANSENINAPEDGVG 120

Query: 121 GKTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWG 180
           GKT+ERRGYGGPRGRGGRRGGFNDGE AEGERPRRAFERHSGTGRGNEFKREGSGRGNWG
Sbjct: 121 GKTTERRGYGGPRGRGGRRGGFNDGENAEGERPRRAFERHSGTGRGNEFKREGSGRGNWG 180

Query: 181 RSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYE 240
           RSTDEFAEVA ETVNETEKNVGDEKPIQE+DTSG NT++PAKEPEETEPEDKEMTLEEYE
Sbjct: 181 RSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEETEPEDKEMTLEEYE 240

Query: 241 KLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEER 300
           KLLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKE+ADKEER
Sbjct: 241 KLLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEIADKEER 300

Query: 301 TKKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLG 360
           TKKSLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYSGS+MSNVAAPSIEDPGQFP LG
Sbjct: 301 TKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVAAPSIEDPGQFPILG 360

[Close]

BLAST of Chy11G203420 vs. ExPASy TrEMBL
Match: A0A1S3CC85 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498822 PE=4 SV=1)

HSP 1 Score: 605.9 bits (1561), Expect = 2.2e-169
Identity = 337/364 (92.58%), Postives = 346/364 (95.05%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQLMAVKQAAA--APKKGSDHPQARQQAAAAAKLSKPANLPS 423
           MATTNPFDLLGDDDAEDPSQLMAVKQAAA  APKKGSDHPQA+QQAAAAAKL+KPANLPS
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQAAAAVAPKKGSDHPQAKQQAAAAAKLNKPANLPS 60

Query: 424 KPLPPAQAVRD-----GRGGSGSGR--GGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGE 483
           KPLPPAQAVR+     GRGG GSGR  GGRGYGRGRGSGGFNRE+ NNEYSFSSNPEDGE
Sbjct: 61  KPLPPAQAVREAKNEGGRGGRGSGRGGGGRGYGRGRGSGGFNREAANNEYSFSSNPEDGE 120

Query: 484 TGRTTEKRGGYGGPRGRGGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGRGN 543
           TGRTTEKRGGYGGPRGRGGRRGGFYN DT DGERPRG FERHSGTGRGNEFKREGSGRGN
Sbjct: 121 TGRTTEKRGGYGGPRGRGGRRGGFYNGDTDDGERPRGVFERHSGTGRGNEFKREGSGRGN 180

Query: 544 WGRSAEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTLEEYE 603
           WGRS +EFPEVAEEANESQKLGDEKPVHED TAGVNTENTAKESEEKEPEDKEMTLEEYE
Sbjct: 181 WGRSTDEFPEVAEEANESQKLGDEKPVHEDGTAGVNTENTAKESEEKEPEDKEMTLEEYE 240

Query: 604 KLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAEKEER 663
           KLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKE A+KEER
Sbjct: 241 KLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEER 300

Query: 664 TKKSVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPT 719
           TKKSVSINEFLKPA+GE+HYTPGGRGRGRGRGSRGGGYV SSMSSNVAAPSIEDPGQFPT
Sbjct: 301 TKKSVSINEFLKPADGERHYTPGGRGRGRGRGSRGGGYVSSSMSSNVAAPSIEDPGQFPT 360

[Close]

BLAST of Chy11G203420 vs. NCBI nr
Match: KAG7011066.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1051 bits (2719), Expect = 0.0
Identity = 613/777 (78.89%), Postives = 655/777 (84.30%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M T+NPFDLLGDDDAEDPSQLIAAK  A  TAP  KK  AQTKP+ S +Q NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           PLPP+QAVRE+RNEGSRGGRGSGRGGGRGYG  RGREGGGFNRD  N+EN +APEDG  G
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYG--RGREGGGFNRDFANSENTSAPEDGEAG 120

Query: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180
           KT+ERRGYGGPRGRGGRRGGFN+GE  +GERPRR FERHSGTGRGNE+KREG+GRGNWGR
Sbjct: 121 KTTERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNEYKREGAGRGNWGR 180

Query: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 240
             DEFAEVA E VNE EKNVGDEKP+QE+DTSGVN ENPAKEPEETEPEDKEMTLEEYEK
Sbjct: 181 PADEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNRENPAKEPEETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300
           LLEDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGSEKDKRKE+ADKEERT
Sbjct: 241 LLEDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLGA 360
           KKSLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GS++SNVAAPSIEDPGQFPTLGA
Sbjct: 301 KKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYGGSSISNVAAPSIEDPGQFPTLGA 360

Query: 361 -------------------------------------------------NSEMATTNPFD 420
                                                            +SEMATTNPFD
Sbjct: 361 KKLTRITVVSPIPFVSRSEIHGVLVKLGFRGRLSRSAIPFQLFRYWFQHSSEMATTNPFD 420

Query: 421 LLGDDDAEDPSQLMAVKQAAAA-PKKGSDHPQARQQAAAAAKLSKPANLPSKPLPPAQAV 480
           LLGDDDAEDPSQL+A K AAA   +KGSDHPQ +Q AAAAAK +KPANLPSKPLPPAQAV
Sbjct: 421 LLGDDDAEDPSQLIAAKHAAAVLSRKGSDHPQGKQ-AAAAAKQNKPANLPSKPLPPAQAV 480

Query: 481 RD-----GRGGSGSGRGGRGYG--RGRGSGGFNRESPNNEYSFSSNPEDGETGRTTEKRG 540
           R+     GRGG GSGRGG GYG  RGRGSGGFNRE P N+YSFSSNPEDGETGRTTEKRG
Sbjct: 481 REAKNEGGRGGRGSGRGGGGYGYGRGRGSGGFNREFPYNDYSFSSNPEDGETGRTTEKRG 540

Query: 541 GYGGPRGRGGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRSAEEFP 600
           GYGGPRGRGGRRGGF N + +DGER RGAFER SGTG GN+FKREGSGRGNWGR  +EF 
Sbjct: 541 GYGGPRGRGGRRGGFNNGEASDGERFRGAFERQSGTGYGNDFKREGSGRGNWGRPTDEFS 600

Query: 601 EVAEEANESQK-LGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRK 660
           E AEE NE+QK +GDEKPVHEDD      EN+A++ EEKEPEDKEMTLEEYEKL EEKRK
Sbjct: 601 EGAEEVNETQKKVGDEKPVHEDD------ENSARQLEEKEPEDKEMTLEEYEKLKEEKRK 660

Query: 661 SLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAEKEERTKKSVSIN 718
           +LLALKTEERKVDPKEFAS+QQLSSKK+NQD+FIKLGSDKDKRKE A+KEERTKKS+SIN
Sbjct: 661 ALLALKTEERKVDPKEFASMQQLSSKKDNQDVFIKLGSDKDKRKEIADKEERTKKSLSIN 720

[Close]

BLAST of Chy11G203420 vs. NCBI nr
Match: KAG6575278.1 (RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1040 bits (2690), Expect = 0.0
Identity = 607/758 (80.08%), Postives = 649/758 (85.62%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M T+NPFDLLGDDDAEDPSQLIAAK  A  TAP  KK  AQTKP+ S +Q NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKQVAAVTAPPPKKGSAQTKPVVSPSQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           PLPP+QAVRE+RNEGSRGGRGSGRGGGRGYG  RGREGGGFNRD  N+EN +APEDG  G
Sbjct: 61  PLPPSQAVREARNEGSRGGRGSGRGGGRGYG--RGREGGGFNRDFANSENTSAPEDGEAG 120

Query: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180
           KT+ERRGYGGPRGRGGRRGGFN+GE  +GERPRR FERHSGTGRGNE+KREG+GRGNWGR
Sbjct: 121 KTTERRGYGGPRGRGGRRGGFNNGEAGDGERPRRVFERHSGTGRGNEYKREGAGRGNWGR 180

Query: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 240
             DEFAEVA E VNE EKNVGDEKP+QE+DTSGVN ENPAKEPEETEPEDKEMTLEEYEK
Sbjct: 181 PADEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNRENPAKEPEETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300
           LLEDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGSEKDKRKE+ADKEERT
Sbjct: 241 LLEDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLGA 360
           KKSLSINEFLRPAEGERHY PGGRGRGRGRGSRGGY GS++SNVAAPSIEDPGQFPTL  
Sbjct: 301 KKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYGGSSISNVAAPSIEDPGQFPTLEI 360

Query: 361 N-----------------------------SEMATTNPFDLLGDDDAEDPSQLMAVKQAA 420
           +                             SEMATTNPFDLLGDDDAEDPSQL+A K AA
Sbjct: 361 HGVLVKLGFRGRLSRSAIPFQLFRYWFQHSSEMATTNPFDLLGDDDAEDPSQLIAAKHAA 420

Query: 421 AA-PKKGSDHPQARQQAAAAAKLSKPANLPSKPLPPAQAVRD-----GRGGSGSGRGGRG 480
           A   +KGSDHPQ +Q AAAAAK +KPANLPSKPLPPAQAVR+     GRGG GSGRGG G
Sbjct: 421 AVLSRKGSDHPQGKQ-AAAAAKQNKPANLPSKPLPPAQAVREAKNEGGRGGRGSGRGGGG 480

Query: 481 YG--RGRGSGGFNRESPNNEYSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGFYNVDT 540
           YG  RGRGSGGFNRE P N+YSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGF N + 
Sbjct: 481 YGYGRGRGSGGFNREFPYNDYSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGFNNGEA 540

Query: 541 ADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRSAEEFPEVAEEANESQK-LGDEKPVH 600
           +DGER RGAFER SGTG GN+FKREG GRGNWGR  +EF E AEE NE+QK +GDEKPVH
Sbjct: 541 SDGERFRGAFERQSGTGYGNDFKREGFGRGNWGRPTDEFSEGAEEVNETQKKVGDEKPVH 600

Query: 601 EDDTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRKSLLALKTEERKVDPKEFASL 660
           EDD      EN+A++ EEKEPEDKEMTLEEYEKL EEKRK+LLALKTEERKVDPKEFAS+
Sbjct: 601 EDD------ENSARQLEEKEPEDKEMTLEEYEKLKEEKRKALLALKTEERKVDPKEFASM 660

Query: 661 QQLSSKKENQDIFIKLGSDKDKRKETAEKEERTKKSVSINEFLKPAEGEKHYTPGGRGRG 715
           QQLSSKK+NQD+FIKLGSDKDKRKE A+KEERTKKS+SINEFLKPAEGE+HY PGGRGRG
Sbjct: 661 QQLSSKKDNQDVFIKLGSDKDKRKEIADKEERTKKSLSINEFLKPAEGERHYMPGGRGRG 720

[Close]

BLAST of Chy11G203420 vs. NCBI nr
Match: KAG7025351.1 (RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 984 bits (2544), Expect = 0.0
Identity = 579/730 (79.32%), Postives = 622/730 (85.21%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M T+NPFDLLGDDDAEDPSQLIAAK  A  T+P  KK PAQ KP   GAQ NKPASLPSK
Sbjct: 1   MATVNPFDLLGDDDAEDPSQLIAAKKVAAVTSPAPKKGPAQNKPAALGAQQNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           PLPPAQAVRE+RNEG RGGRGSGRG GRGYG  RGREG GF R S NNENI+A EDG  G
Sbjct: 61  PLPPAQAVREARNEGGRGGRGSGRGVGRGYG--RGREGSGFVRGSFNNENISAAEDGETG 120

Query: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180
           KT+ERRGYGGPRGRGGRRGGFN+GE A+GERPRR FERHSGTG GNEFKREGSGRGNWGR
Sbjct: 121 KTTERRGYGGPRGRGGRRGGFNNGEAADGERPRRVFERHSGTGHGNEFKREGSGRGNWGR 180

Query: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 240
            T+EFAE   E VNE EKN+GDEKP+QED+  GVNTEN AKEPEETEPEDKEMTLEEYEK
Sbjct: 181 PTEEFAETVEEAVNEMEKNMGDEKPVQEDNAEGVNTENAAKEPEETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300
           LLE+KRKAL+ALKTEERKVDPKEFASMQQLS KK+NNDIFIKLGSEKDKRKE+ADKEERT
Sbjct: 241 LLEEKRKALMALKTEERKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRG-RGSRGGYSGSTMSNVAAPSIEDPGQFPTLG 360
           KKSLSINEFL+PAEGERHY  GGRGRGRG RGSRGGYSG+++SNV APSIEDPGQFPTLG
Sbjct: 301 KKSLSINEFLKPAEGERHYGSGGRGRGRGGRGSRGGYSGNSISNVPAPSIEDPGQFPTLG 360

Query: 361 ANSEMATTNPFDLLGDDDAEDPSQLMAVKQAAAAP-KKGSDHPQARQQAAAAAKLSKPAN 420
           AN EMAT NPFDLLGDDDAEDPSQL+A K+  AAP KKG   P   + AA  A+ +K A+
Sbjct: 361 ANLEMATVNPFDLLGDDDAEDPSQLIAAKKVVAAPPKKG---PVQTKPAALGAQQNKAAS 420

Query: 421 LPSKPLPPAQAVRDGR-----GGSGSGRGG-RGYGRGRGSGGFNRESPNNEYSFSSNPED 480
           LPSKPLPPAQAVR+ R     GG GSGRGG RGYGRGR   GFNR S NNE S ++  ED
Sbjct: 421 LPSKPLPPAQAVREARNESSRGGRGSGRGGGRGYGRGREGSGFNRGSFNNESSSAA--ED 480

Query: 481 GETGRTTEKRGGYGGPRGRGGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGR 540
           GETG+TTE+RG Y GPRGRGGRRGGF N +  DGERPR  FERHSGTG GNEFKREGSGR
Sbjct: 481 GETGKTTERRG-YAGPRGRGGRRGGFNNGEATDGERPRRVFERHSGTGHGNEFKREGSGR 540

Query: 541 GNWGRSAEEFPEVAEEA-NESQK-LGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTL 600
           GNWGR  EEF E AEEA NE++K +GDEKPV EDDT  VN EN+AKE EE EPEDKEMTL
Sbjct: 541 GNWGRPTEEFAEAAEEAVNETEKNMGDEKPVQEDDTGDVNAENSAKEPEETEPEDKEMTL 600

Query: 601 EEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAE 660
           EEYEKLLEEKRK+LL LKTE RKVDPKEFAS+QQLS KKEN DIFIKLGS+KDKRKE AE
Sbjct: 601 EEYEKLLEEKRKALLTLKTEGRKVDPKEFASMQQLSCKKENNDIFIKLGSEKDKRKEIAE 660

Query: 661 KEERTKKSVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGG--YVGSSMSSNVAAPSIED 718
           KE+RTKKS+SINEFLKPAEGE+HY PGGRGRGRGRGSRGGG  Y G+S + NVA PSIED
Sbjct: 661 KEDRTKKSLSINEFLKPAEGERHYAPGGRGRGRGRGSRGGGGGYSGNS-TINVATPSIED 720

[Close]

BLAST of Chy11G203420 vs. NCBI nr
Match: XP_004140509.1 (RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46515.1 hypothetical protein Csa_004977 [Cucumis sativus])

HSP 1 Score: 650 bits (1676), Expect = 3.64e-228
Identity = 356/360 (98.89%), Postives = 358/360 (99.44%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK
Sbjct: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG
Sbjct: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120

Query: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180
           KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR
Sbjct: 121 KTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGR 180

Query: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEK 240
           STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEP+ETEPEDKEMTLEEYEK
Sbjct: 181 STDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQETEPEDKEMTLEEYEK 240

Query: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300
           LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT
Sbjct: 241 LLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERT 300

Query: 301 KKSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSTMSNVAAPSIEDPGQFPTLGA 360
           KKSLSINEFLRPA+GERHYAPGGRGRGRGRGSRGGYSGS MSNVAAPSI DPGQFPTLGA
Sbjct: 301 KKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVAAPSIGDPGQFPTLGA 360

[Close]

BLAST of Chy11G203420 vs. NCBI nr
Match: XP_004150996.1 (RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46514.1 hypothetical protein Csa_005350 [Cucumis sativus])

HSP 1 Score: 633 bits (1633), Expect = 1.17e-221
Identity = 347/360 (96.39%), Postives = 351/360 (97.50%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSKP 423
           MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQA+QQAAAAAKLSKPANLPSKP
Sbjct: 1   MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQAKQQAAAAAKLSKPANLPSKP 60

Query: 424 LPPAQAVRD-----GRGGSGSGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRT 483
           LPPAQAVR+     GRGG  SGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRT
Sbjct: 61  LPPAQAVREAKNEGGRGGRSSGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRT 120

Query: 484 TEKRGGYGGPRGRGGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRS 543
           TEKRGGYGGPRGRGGRRGGFYN DTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRS
Sbjct: 121 TEKRGGYGGPRGRGGRRGGFYNGDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRS 180

Query: 544 AEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLE 603
           AEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+
Sbjct: 181 AEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLD 240

Query: 604 EKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAEKEERTKKS 663
           EKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETA+KEERTKKS
Sbjct: 241 EKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKS 300

Query: 664 VSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 718
           VSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 301 VSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 360

[Close]

BLAST of Chy11G203420 vs. TAIR 10
Match: AT4G16830.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 280.4 bits (716), Expect = 4.0e-75
Identity = 209/373 (56.03%), Postives = 251/373 (67.29%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQL-MAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSK 423
           MAT NPFDLL DDDAEDPSQL +A+++   + K G        Q ++    S P  LPSK
Sbjct: 1   MATLNPFDLL-DDDAEDPSQLAVAIEKIDKSKKSG--------QVSSLPAKSAP-KLPSK 60

Query: 424 PLPPAQAVRDGRGGSGSGRGGRGYGRGRGSGGFNRESPNNEYS--FSSNPEDGETGRTT- 483
           PLPPAQAVR+ R  +  G GGRG G  RG GG+NR+  NN YS  ++    +G+  +++ 
Sbjct: 61  PLPPAQAVREARSDAPRGGGGRG-GFNRGRGGYNRDDGNNGYSGGYTKPSGEGDVSKSSY 120

Query: 484 EKRGGYGGPRGR---------GGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGS 543
           E+RGG G PRG          GGRRGGF N +  DGERPR AFER SGTGRG++FKR+GS
Sbjct: 121 ERRGGGGAPRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGS 180

Query: 544 GRGNWGRSAEEFPEVAEEAN--ESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEM 603
           GRGNWG   EE     E     E++K   EKP  +D  A  N E+T    EEKEPEDKEM
Sbjct: 181 GRGNWGTPGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKEDTV--VEEKEPEDKEM 240

Query: 604 TLEEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKET 663
           TL+EYEK+LEEK+K+L +L T ERKVD K F S+QQLS+KK N +IFIKLGSDKDKRK+ 
Sbjct: 241 TLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD- 300

Query: 664 AEKEERTKKSVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSS---NVAAPS 719
            +KEE+ KK+VSINEFLKPAEG  +Y  GGRG GRGRG RG G V S  S    N AAP+
Sbjct: 301 -DKEEKAKKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNEAAPA 355

[Close]

BLAST of Chy11G203420 vs. TAIR 10
Match: AT4G17520.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 243.4 bits (620), Expect = 5.5e-64
Identity = 190/386 (49.22%), Postives = 238/386 (61.66%), Query Frame = 0


Query: 1   MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSK 60
           M ++NPFDLL DDDAEDPSQ++A+K       PL   AP QT          K   +P+K
Sbjct: 1   MASVNPFDLL-DDDAEDPSQIVASK-------PLKVVAPVQTA---------KSGKMPTK 60

Query: 61  PLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGG 120
           P PP+QAVRE+RN       G GRG GRG  YGRG  GG  NRDS NN+   A E+G GG
Sbjct: 61  PPPPSQAVREARN-----APGGGRGAGRGGSYGRGGRGGN-NRDSRNNDG-PANENGYGG 120

Query: 121 ---KTSERRG--YGGPRG--RGGRRGGF-NDGEGAEGERPRRAFERHSGTGRGNEFKREG 180
              ++ E  G   GGP G  RG RRG + N G+  + ERPR+ ++RHS T  GNE KR+G
Sbjct: 121 GYRRSEEGDGARRGGPVGGYRGDRRGSYSNGGDSGDSERPRKNYDRHSRTAYGNEDKRDG 180

Query: 181 SGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEETEPEDKE 240
           +GR NWG + D+   V  E+    +KN+  EK   E + +    E PA++ EE +PEDKE
Sbjct: 181 AGRANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE-KPEDKE 240

Query: 241 MTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNND-IFIKLGSEKDKRK 300
           MTLEEYEK+LE+K+KAL A K EERKVD K F +MQQLSSKK NND +FIKLG+EKDKR 
Sbjct: 241 MTLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR- 300

Query: 301 EMADKEERTKKSLSINEFLRPAEGERHYAP-----GGR-------------GRGRGRGSR 360
            + ++EE+T+KSLSINEFL+PA+G+ +Y P     GGR             GR    G R
Sbjct: 301 -ITEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGR 359

[Close]

BLAST of Chy11G203420 vs. TAIR 10
Match: AT4G16830.3 (Hyaluronan / mRNA binding family )

HSP 1 Score: 236.9 bits (603), Expect = 5.1e-62
Identity = 173/306 (56.54%), Postives = 208/306 (67.97%), Query Frame = 0


Query: 430 VRDGRGGSGSGRGGRGYGRGRGSGGFNRESPNNEYS--FSSNPEDGETGRTT-EKRGGYG 489
           VR+ R  +  G GGRG G  RG GG+NR+  NN YS  ++    +G+  +++ E+RGG G
Sbjct: 48  VREARSDAPRGGGGRG-GFNRGRGGYNRDDGNNGYSGGYTKPSGEGDVSKSSYERRGGGG 107

Query: 490 GPRGR---------GGRRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGR 549
            PRG          GGRRGGF N +  DGERPR AFER SGTGRG++FKR+GSGRGNWG 
Sbjct: 108 APRGSFRGEGGGPGGGRRGGFSN-EGGDGERPRRAFERRSGTGRGSDFKRDGSGRGNWGT 167

Query: 550 SAEEFPEVAEEAN--ESQKLGDEKPVHEDDTAGVNTENTAKESEEKEPEDKEMTLEEYEK 609
             EE     E     E++K   EKP  +D  A  N E+T    EEKEPEDKEMTL+EYEK
Sbjct: 168 PGEEIAAETEAVAGVETEKDVGEKPAVDDVAADANKEDTV--VEEKEPEDKEMTLDEYEK 227

Query: 610 LLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETAEKEERT 669
           +LEEK+K+L +L T ERKVD K F S+QQLS+KK N +IFIKLGSDKDKRK+  +KEE+ 
Sbjct: 228 ILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKA 287

Query: 670 KKSVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSS---NVAAPSIEDPGQF 719
           KK+VSINEFLKPAEG  +Y  GGRG GRGRG RG G V S  S    N AAP+I D  QF
Sbjct: 288 KKAVSINEFLKPAEGGNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQF 345

[Close]

BLAST of Chy11G203420 vs. TAIR 10
Match: AT5G47210.1 (Hyaluronan / mRNA binding family )

HSP 1 Score: 228.4 bits (581), Expect = 1.8e-59
Identity = 179/374 (47.86%), Postives = 227/374 (60.70%), Query Frame = 0


Query: 364 MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQARQQAAAAAKLSKPANLPSKP 423
           MA+ NPFDLLG DDAEDPSQL                 Q  ++AAAA +  K A  P+KP
Sbjct: 1   MASLNPFDLLG-DDAEDPSQLAVALS------------QKVEKAAAAVQPPKAAKFPTKP 60

Query: 424 LPPAQAVRDGRGGSGSGRGGR----GYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRTT 483
            PP+QAVR+ R     GRGG     G+ RGRG+GG+NR++ NN+   + N   G   R +
Sbjct: 61  APPSQAVRESRNAPQGGRGGTGGRGGFSRGRGNGGYNRDNRNNDAPGNENGFSGGYRRPS 120

Query: 484 E------KRGGYGGPRGRGG----RRGGFYNVDTADGERPRGAFERHSGTGRGNEFKREG 543
           E      + G  GG R  GG    RRGG  N ++ D ERP   ++RHS TG G   KR G
Sbjct: 121 EDADGASRGGSVGGYRVGGGREGPRRGGVANGESGDVERPPRNYDRHSRTGHGTGMKRNG 180

Query: 544 SGRGNWGRSAEEFPEVAEEANESQKLGD--EKPVHEDDTAGVNTENTAKESEEKEPED-- 603
            GRGNWG + ++ P  +EE     +     EK   ED+T     E TA+E  +KE E+  
Sbjct: 181 GGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEAEEAE 240

Query: 604 -KEMTLEEYEKLLEEKRKSLLALKTEERKVDPKEFASLQQLSSKKE-NQDIFIKLGSDKD 663
            +EMTLEEYEK+LEEK+K+L A K EERKVD K F S+QQLS+KK  +++IFIKLGSDK+
Sbjct: 241 AREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLGSDKE 300

Query: 664 KRKETAEKEERTKKSVSINEFLKPAEGEKHYTPGGRGRGR-GRGSRGGGYVGSSMSSNVA 717
           KRK+  EK    KKS+SINEFLKPA+G+++   GG  RGR GRG RG G      +   A
Sbjct: 301 KRKDATEK---AKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEG-GNQRYAKEAA 357

[Close]

BLAST of Chy11G203420 vs. TAIR 10
Match: AT4G16830.2 (Hyaluronan / mRNA binding family )

HSP 1 Score: 205.7 bits (522), Expect = 1.3e-52
Identity = 132/218 (60.55%), Postives = 158/218 (72.48%), Query Frame = 0


Query: 146 GAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGRSTDEF-AEVAGETVNETEKNVGDEK 205
           G +GERPRRAFER SGTGRG++FKR+GSGRGNWG   +E  AE       ETEK+VG EK
Sbjct: 51  GGDGERPRRAFERRSGTGRGSDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EK 110

Query: 206 PIQEDDTSGVNTENPAKEPEETEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEF 265
           P  +D  +  N E+     EE EPEDKEMTL+EYEK+LE+K+KAL +L T ERKVD K F
Sbjct: 111 PAVDDVAADANKEDTV--VEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVF 170

Query: 266 ASMQQLSSKKDNNDIFIKLGSEKDKRKEMADKEERTKKSLSINEFLRPAEGERHYAPGGR 325
            SMQQLS+KK N++IFIKLGS+KDKRK+  DKEE+ KK++SINEFL+PAEG  +Y  G  
Sbjct: 171 ESMQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRG 230

Query: 326 GRGRGRGSRGGYSGSTMS---NVAAPSIEDPGQFPTLG 360
           GRGRG   RGG S        N AAP+I D  QFP+LG
Sbjct: 231 GRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLG 263

The following BLAST results are available for this feature:

BLAST of Chy11G203420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	5.7e-74	56.03	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	1.5e-66	59.41	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
O23593	7.7e-63	49.22	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9LVT8	2.6e-58	47.86	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of Chy11G203420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Z4	3.5e-183	98.89	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106...	[more]
A0A0A0KCI2	2.8e-177	96.39	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G105...	[more]
A0A1S3CBH1	4.1e-176	95.28	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7TA33	1.0e-174	95.01	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CC85	2.2e-169	92.58	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Chy11G203420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7011066.1	0.0	78.89	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
KAG6575278.1	0.0	80.08	RGG repeats nuclear RNA binding protein B, partial [Cucurbita argyrosperma subsp...	[more]
KAG7025351.1	0.0	79.32	RGG repeats nuclear RNA binding protein B [Cucurbita argyrosperma subsp. argyros...	[more]
XP_004140509.1	3.64e-228	98.89	RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46515.1 hypothet...	[more]
XP_004150996.1	1.17e-221	96.39	RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46514.1 hypothet...	[more]

BLAST of Chy11G203420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G16830.1	4.0e-75	56.03	Hyaluronan / mRNA binding family	[more]
AT4G17520.1	5.5e-64	49.22	Hyaluronan / mRNA binding family	[more]
AT4G16830.3	5.1e-62	56.54	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	1.8e-59	47.86	Hyaluronan / mRNA binding family	[more]
AT4G16830.2	1.3e-52	60.55	Hyaluronan / mRNA binding family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 235..258
None	No IPR available	COILS	Coil	Coil	coord: 590..613
None	No IPR available	GENE3D	6.10.140.1040		coord: 150..263 e-value: 8.2E-10 score: 41.0 coord: 507..618 e-value: 5.7E-9 score: 38.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 634..678
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 541..594
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 455..473
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 609..718
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..594
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 507..534
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 196..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 281..323
None	No IPR available	PANTHER	PTHR12299:SF53	RGG REPEATS NUCLEAR RNA BINDING PROTEIN A	coord: 1..360
None	No IPR available	PANTHER	PTHR12299:SF53	RGG REPEATS NUCLEAR RNA BINDING PROTEIN A	coord: 364..718
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 152..260 e-value: 4.6E-36 score: 135.8 coord: 509..615 e-value: 8.5E-29 score: 111.7
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 509..614 e-value: 1.7E-23 score: 83.7 coord: 152..259 e-value: 9.7E-26 score: 90.9
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..81 e-value: 3.3E-19 score: 69.5 coord: 364..443 e-value: 4.6E-17 score: 62.6
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 364..718
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G203420.1	Chy11G203420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding