Chy11G202980 (gene) Cucumber (hystrix) v1

Overview
NameChy11G202980
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUvrABC system protein C
LocationchrH11: 23587853 .. 23588280 (+)
RNA-Seq ExpressionChy11G202980
SyntenyChy11G202980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAGAGAGACATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGCTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCCGACGACCTCACATTAAATCGTGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTATTCTTACCTGTGTTTGAAGGATTTAAGCTAGACTCGTGGAAGATTCAAATTTCTAGCATCTAGAGTATTTTAATAAGTTGAATGGTTATTTTTAGTTTTTGATTTTTTTATAAGATTATATAAATATGACTTGTATCAAAACTTATAAACTCGGAGTTAGATTATTTGAAATCTTTGTTTCTATATATTCATTAGCATCTCTTGT

mRNA sequence

GAAGAGAGAGACATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGCTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCCGACGACCTCACATTAAATCGTGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTATTCTTACCTGTGTTTGAAGGATTTAAGCTAGACTCGTGGAAGATTCAAATTTCTAGCATCTAGAGTATTTTAATAAGTTGAATGGTTATTTTTAGTTTTTGATTTTTTTATAAGATTATATAAATATGACTTGTATCAAAACTTATAAACTCGGAGTTAGATTATTTGAAATCTTTGTTTCTATATATTCATTAGCATCTCTTGT

Coding sequence (CDS)

GAAGAGAGAGACATGGGAAATTTGGTGGGAAAGAGAAAATTGGTACATCCAATTGAGGGCTATGAAGGATTGAGATCAAGTTCAAGGCCTTTGAGAATCAAAGTAGTGATGACTAGAAAGCAGCTGAAGAAGCTCATGGCTATGGCCGACGACCTCACATTAAATCGTGATTTAGGCACCTTGATCTTCCAAGAATGTTGCCAAGGTAAATTGGATACTCGTATTCTTACCTGTGTTTGAAGGATTTAAGCTAGACTCGTGGAAGATTCAAATTTCTAGCATCTAGAGTATTTTAATAAGTTGAATGGTTATTTTTAGTTTTTGATTTTTTTATAAGATTATATAAATATGACTTGTATCAAAACTTATAAACTCGGAGTTAGATTATTTGAAATCTTTGTTTCTATATATTCATTAGCATCTCTTGT

Protein sequence

EERDMGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTLNRDLGTLIFQECCQGKLDTRILTCV*RI*ARLVEDSNF*HLEYFNKLNGYF*FLIFL*DYINMTCIKTYKLGVRLFEIFVSIYSLASLX
Homology
BLAST of Chy11G202980 vs. ExPASy TrEMBL
Match: A0A7N2MCT3 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 34/72 (47.22%), Postives = 50/72 (69.44%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTLNRDLGTLIFQ 64
          MGN  G++K VHP++  +G+R  S  LRI+V M++++LK++MA  D    N DLG LI Q
Sbjct: 1  MGNFFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRKLKEMMAQVDLTQGNSDLGGLIMQ 60

Query: 65 ECCQGKLDTRIL 77
          EC +G+L+ R L
Sbjct: 61 ECLEGRLNARAL 72

BLAST of Chy11G202980 vs. ExPASy TrEMBL
Match: A0A5E4FCA7 (PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.8e-06
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTL---NRD 64
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   +   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 65 LGTLIFQECCQGKLDTRILTCV 80
          LG LI +EC +G+   R++  V
Sbjct: 61 LGRLILRECLEGRSCARVVAAV 82

BLAST of Chy11G202980 vs. ExPASy TrEMBL
Match: M5X891 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTL---NRD 64
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   +   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPNSNSE 60

Query: 65 LGTLIFQECCQGKLDTRIL 77
          LG LI +EC +G+   R++
Sbjct: 61 LGRLILRECLEGRSCARVV 79

BLAST of Chy11G202980 vs. ExPASy TrEMBL
Match: A0A314ZEY0 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_19127 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.4e-05
Identity = 38/84 (45.24%), Postives = 49/84 (58.33%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLR------SSSRPLRIKVVMTRKQLKKLMAMAD---DLTLN 64
          MGN VG+ K VHP E  + +R      SSS  LRIKV MT K+LK+LMA  D       N
Sbjct: 1  MGNWVGRYKGVHPTED-QAIRHGTSSSSSSNSLRIKVRMTAKKLKELMAEVDVTKSPNSN 60

Query: 65 RDLGTLIFQECCQGKLDTRILTCV 80
           +LG LI +EC +G+   R++  V
Sbjct: 61 SELGRLILRECLEGRSRARVVAAV 83

BLAST of Chy11G202980 vs. ExPASy TrEMBL
Match: A0A5N5EYT1 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_031335 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.4e-05
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIE--GYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTLNR---DLG 64
          MGN +G+ K +H  E  G  G R+SS  LR+KV MT +QLK+LMA  D     R   +LG
Sbjct: 1  MGNWIGRGKGLHSAEDPGLTGHRTSSNSLRVKVRMTTRQLKELMAQVDMNNSGRNFEELG 60

Query: 65 TLIFQECCQGKL 72
           +I QEC +G+L
Sbjct: 61 LVILQECLEGRL 72

BLAST of Chy11G202980 vs. NCBI nr
Match: KAG7013803.1 (hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 108 bits (271), Expect = 4.51e-28
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTLNRDLGTLIFQ 64
          MGN +GKR+++HPIEG+EGLRS SRPLRIKVVMTR QLK+LMAMA DL+L  DL +LI Q
Sbjct: 1  MGNWIGKRRVIHPIEGHEGLRSCSRPLRIKVVMTRNQLKELMAMA-DLSLCDDLASLILQ 60

Query: 65 ECCQGKLDTRILTCV 79
          ECC+GK D R+LT V
Sbjct: 61 ECCRGKFDARLLTSV 74

BLAST of Chy11G202980 vs. NCBI nr
Match: KAF3963623.1 (hypothetical protein CMV_012006 [Castanea mollissima])

HSP 1 Score: 67.8 bits (164), Expect = 7.49e-12
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLRSSSRPLRIKVVMTRKQLKKLMAMADDLTLNRDLGTLIFQ 64
          MGN  G++K VHP++  +G+R  S  LRI+V M++++LK++M   D    N DLG LI Q
Sbjct: 1  MGNSFGRKKGVHPVDQADGIRVPSSYLRIRVRMSKRELKEMMDQVDLTQGNSDLGGLIMQ 60

Query: 65 ECCQGKLDTRIL 76
          EC +G+L+ R L
Sbjct: 61 ECLEGRLNARAL 72

BLAST of Chy11G202980 vs. NCBI nr
Match: VVA25556.1 (PREDICTED: POPTR_0014s10080g [Prunus dulcis])

HSP 1 Score: 59.7 bits (143), Expect = 1.86e-08
Identity = 38/82 (46.34%), Postives = 47/82 (57.32%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTL---NRD 64
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   +   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPDSNSE 60

Query: 65 LGTLIFQECCQGKLDTRILTCV 79
          LG LI +EC +G+   R++  V
Sbjct: 61 LGRLILRECLEGRSCARVVAAV 82

BLAST of Chy11G202980 vs. NCBI nr
Match: XP_024197720.1 (uncharacterized protein LOC112200945 [Rosa chinensis])

HSP 1 Score: 59.3 bits (142), Expect = 3.23e-08
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLRS--SSRPLRIKVVMTRKQLKKLMAMADDLT---LNRDLG 64
          MGN VGK + VHP++  EGL    S+  +RIK+ MT+++LK+LMA  D       + +LG
Sbjct: 1  MGNWVGKERGVHPVDEDEGLHGVGSNSLMRIKLRMTKRELKELMAQVDMTNGGDKSEELG 60

Query: 65 TLIFQECCQGKLDTRIL 76
           LI +EC +G+L  R++
Sbjct: 61 GLILKECLEGRLCARVV 77

BLAST of Chy11G202980 vs. NCBI nr
Match: ONI23590.1 (hypothetical protein PRUPE_2G197000 [Prunus persica])

HSP 1 Score: 58.2 bits (139), Expect = 7.30e-08
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 0

Query: 5  MGNLVGKRKLVHPIEGYEGLR----SSSRPLRIKVVMTRKQLKKLMAMADDLTL---NRD 64
          MGN VG+ K VHP E     R    SSS  LRIKV MT KQ K+LMA  D   +   N +
Sbjct: 1  MGNWVGRYKGVHPTEDQARHRTSSSSSSNSLRIKVRMTAKQFKELMAEVDATKIPNSNSE 60

Query: 65 LGTLIFQECCQGKLDTRIL 76
          LG LI +EC +G+   R++
Sbjct: 61 LGRLILRECLEGRSCARVV 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7N2MCT35.0e-0947.22Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A5E4FCA76.8e-0646.34PREDICTED: POPTR_0014s10080g OS=Prunus dulcis OX=3755 GN=ALMOND_2B018674 PE=4 SV... [more]
M5X8912.6e-0546.84Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G197000 PE=4 SV=1[more]
A0A314ZEY03.4e-0545.24Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_191... [more]
A0A5N5EYT14.4e-0547.22Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... [more]
Match NameE-valueIdentityDescription
KAG7013803.14.51e-2872.00hypothetical protein SDJN02_23970, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAF3963623.17.49e-1245.83hypothetical protein CMV_012006 [Castanea mollissima][more]
VVA25556.11.86e-0846.34PREDICTED: POPTR_0014s10080g [Prunus dulcis][more]
XP_024197720.13.23e-0842.86uncharacterized protein LOC112200945 [Rosa chinensis][more]
ONI23590.17.30e-0846.84hypothetical protein PRUPE_2G197000 [Prunus persica][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G202980.1Chy11G202980.1mRNA