Chy11G202930 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G202930
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	chrH11: 23568463 .. 23569024 (+)
RNA-Seq Expression	Chy11G202930
Synteny	Chy11G202930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCCTTCAATTTCGTCGTCAACAATATGCGAACTCTCGTAGATGCTTTTGCCACATTGGCCATGGCGGATTATACGGGGGATGCAATATTTTCACCGGAAATGTTTTGCCTAATGGCGGATTCAAATGTTTCCATTCACAGCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAGACACCTTCAAAATTCTTGGTTCTTCTTGGGTGAAATTTTCCCTCTTGCCCAAGATTTGCAAGATTTCGGTTACACTTCTTTCTCCTTCTCTATCGGCCGTGACCCAGACCTCGCCCATATCAAATTCCAAGGCCCCGGTGGTAAGTTTTTTTCCTTTCAATAATTAATTCCCTTCTTCTTCTTCCCAGATTTGATTTCTTTAATTTCGTTTTCTAGGGCTTGTTCATGAAATTACGTTAACGTTGGTTTATTGCCATCATTCGTTGCGCATTCACCAATTTGATCTCTCTGTTTTCGTTTCCATGGATTCTCAAGAATTCTCCAACATTATTTCTCAGTATCATGTGTTTGATGACGGTAATTAA

mRNA sequence

ATGATGTCCTTCAATTTCGTCGTCAACAATATGCGAACTCTCGTAGATGCTTTTGCCACATTGGCCATGGCGGATTATACGGGGGATGCAATATTTTCACCGGAAATGTTTTGCCTAATGGCGGATTCAAATGTTTCCATTCACAGCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAGACACCTTCAAAATTCTTGGTTCTTCTTGGGTGAAATTTTCCCTCTTGCCCAAGATTTGCAAGATTTCGGTTACACTTCTTTCTCCTTCTCTATCGGCCGTGACCCAGACCTCGCCCATATCAAATTCCAAGGCCCCGGTGGGCTTGTTCATGAAATTACGTTAACGTTGGTTTATTGCCATCATTCGTTGCGCATTCACCAATTTGATCTCTCTGTTTTCGTTTCCATGGATTCTCAAGAATTCTCCAACATTATTTCTCAGTATCATGTGTTTGATGACGGTAATTAA

Coding sequence (CDS)

ATGATGTCCTTCAATTTCGTCGTCAACAATATGCGAACTCTCGTAGATGCTTTTGCCACATTGGCCATGGCGGATTATACGGGGGATGCAATATTTTCACCGGAAATGTTTTGCCTAATGGCGGATTCAAATGTTTCCATTCACAGCGCCATTGGCCTTCAACTCTGGCCTCCATTCTTCGACCATTACTTCTGCAGACACCTTCAAAATTCTTGGTTCTTCTTGGGTGAAATTTTCCCTCTTGCCCAAGATTTGCAAGATTTCGGTTACACTTCTTTCTCCTTCTCTATCGGCCGTGACCCAGACCTCGCCCATATCAAATTCCAAGGCCCCGGTGGGCTTGTTCATGAAATTACGTTAACGTTGGTTTATTGCCATCATTCGTTGCGCATTCACCAATTTGATCTCTCTGTTTTCGTTTCCATGGATTCTCAAGAATTCTCCAACATTATTTCTCAGTATCATGTGTTTGATGACGGTAATTAA

Protein sequence

MMSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFFDHYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITLTLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDDGN*

Homology

[Close]

BLAST of Chy11G202930 vs. ExPASy TrEMBL
Match: A0A0A0LIF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848840 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 9.8e-70
Identity = 130/159 (81.76%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MMSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60
           M SFNF+VNNMRTLVDAFATL +AD+ GDA FSPEMFCLMADSNVSIHSAIGLQLWPPFF
Sbjct: 1   MSSFNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60

Query: 61  DHYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITL 120
           DHYFCR L+NSWFF  EIFPLAQ L+DFGYTSFSFSIGRDP  A I+FQGP  L+ E+TL
Sbjct: 61  DHYFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEFQGPTRLLLEVTL 120

Query: 121 TLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDD 160
            LV+CH  LRIHQFDLSVFVSMDSQ+FSN+ISQYH+FDD
Sbjct: 121 RLVFCHLPLRIHQFDLSVFVSMDSQQFSNLISQYHMFDD 159

[Close]

BLAST of Chy11G202930 vs. ExPASy TrEMBL
Match: A0A5A7TA03 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003120 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.4e-68
Identity = 127/160 (79.38%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 2   MSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFFD 61
           MSFNFVVNNM+TL+DA ATL +AD   DA FSPEMFC+M DSNVSIHS IGLQLWPPFFD
Sbjct: 1   MSFNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNVSIHSTIGLQLWPPFFD 60

Query: 62  HYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITLT 121
           HYFC  LQ SWFF  EIFPLAQDLQD GYTSFSFSIG +PDLA IKFQGP GL+HE    
Sbjct: 61  HYFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFSIGPNPDLAQIKFQGPNGLLHETNFE 120

Query: 122 LVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDDGN 162
           LVY HH LRI  FDLSVFVSMDSQEFSN+ISQYH+FDDGN
Sbjct: 121 LVYSHHPLRIPDFDLSVFVSMDSQEFSNVISQYHMFDDGN 160

[Close]

BLAST of Chy11G202930 vs. ExPASy TrEMBL
Match: A0A1S3CBB9 (uncharacterized protein LOC103498776 OS=Cucumis melo OX=3656 GN=LOC103498776 PE=4 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 6.0e-67
Identity = 125/158 (79.11%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 2   MSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFFD 61
           MSFNFVVNNM+TL+DA ATL +AD   DA FSPEMFC+M DSNVSIHS IGLQLWPPFFD
Sbjct: 1   MSFNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNVSIHSTIGLQLWPPFFD 60

Query: 62  HYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITLT 121
           HYFC  LQ SWFF  EIFPLAQDLQD GYTSFSFSIG +PDLA IKFQGP GL+HE    
Sbjct: 61  HYFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFSIGPNPDLAQIKFQGPNGLLHETNFE 120

Query: 122 LVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDD 160
           LVY HH LRI  FDLSVFVSMDSQEFSN+ISQYH+FDD
Sbjct: 121 LVYSHHPLRIPDFDLSVFVSMDSQEFSNVISQYHMFDD 158

[Close]

BLAST of Chy11G202930 vs. ExPASy TrEMBL
Match: A0A0A0KFM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106730 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 84/160 (52.50%), Postives = 109/160 (68.12%), Query Frame = 0


Query: 1   MMSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60
           M SF   V++M+ L+D+  TL + D   DAIFSP+ FC+MADS+ SIHSA G+QLWPPFF
Sbjct: 1   MWSFRVAVDDMKVLIDSLITLGLVDVMADAIFSPDTFCIMADSDASIHSAFGVQLWPPFF 60

Query: 61  DHYFCRHL-QNSWFFLGEIFPLAQDLQDFGYTSFSFSIGR-DPDLAHIKFQGPGGLVHEI 120
           D ++   + Q  WF L  +F LA +L + GYTS +FSI R   + A  KF+GP GL+ ++
Sbjct: 61  DSFYSDDIRQLFWFRLTHLFTLAVELLESGYTSLTFSIERFRYNYAQFKFEGPNGLLRDV 120

Query: 121 TLTLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFD 159
              L      LRI Q DLS FVSMDS+EFSNIIS+YH+FD
Sbjct: 121 NFLLTPVVRPLRIGQIDLSAFVSMDSEEFSNIISEYHMFD 160

[Close]

BLAST of Chy11G202930 vs. ExPASy TrEMBL
Match: A0A0A0KA18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006750 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 8.4e-37
Identity = 85/160 (53.12%), Postives = 110/160 (68.75%), Query Frame = 0


Query: 1   MMSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60
           M SF   V++M+ L+D+  TL + D   DAIFSP+MFC++ADS+VS+ SA GLQLWPPFF
Sbjct: 1   MWSFRVAVDDMKVLIDSLITLGLVDVMADAIFSPDMFCILADSDVSLQSAFGLQLWPPFF 60

Query: 61  DHYFCRHL-QNSWFFLGEIFPLAQDLQDFGYTSFSFSIGR-DPDLAHIKFQGPGGLVHEI 120
           D ++  +L Q  WF L  +FPLA +L + G TS +FSI R   + A  KF+GP GL+ E+
Sbjct: 61  DSFYSDNLRQIFWFRLTHLFPLALELLESGCTSLTFSIERFRHNYAQFKFEGPNGLLREV 120

Query: 121 TLTLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFD 159
              L      LRI Q DLS FV+MDSQEFS IISQY++FD
Sbjct: 121 NFRLTPIVRPLRIGQIDLSAFVTMDSQEFSYIISQYNMFD 160

[Close]

BLAST of Chy11G202930 vs. NCBI nr
Match: XP_011652354.1 (uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus])

HSP 1 Score: 273 bits (697), Expect = 5.12e-90
Identity = 130/159 (81.76%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MMSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60
           M SFNF+VNNMRTLVDAFATL +AD+ GDA FSPEMFCLMADSNVSIHSAIGLQLWPPFF
Sbjct: 1   MSSFNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60

Query: 61  DHYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITL 120
           DHYFCR L+NSWFF  EIFPLAQ L+DFGYTSFSFSIGRDP  A I+FQGP  L+ E+TL
Sbjct: 61  DHYFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEFQGPTRLLLEVTL 120

Query: 121 TLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDD 159
            LV+CH  LRIHQFDLSVFVSMDSQ+FSN+ISQYH+FDD
Sbjct: 121 RLVFCHLPLRIHQFDLSVFVSMDSQQFSNLISQYHMFDD 159

[Close]

BLAST of Chy11G202930 vs. NCBI nr
Match: XP_004146827.2 (uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus] >KGN59826.1 hypothetical protein Csa_001355 [Cucumis sativus])

HSP 1 Score: 273 bits (697), Expect = 5.65e-90
Identity = 130/159 (81.76%), Postives = 142/159 (89.31%), Query Frame = 0


Query: 1   MMSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60
           M SFNF+VNNMRTLVDAFATL +AD+ GDA FSPEMFCLMADSNVSIHSAIGLQLWPPFF
Sbjct: 1   MSSFNFLVNNMRTLVDAFATLGLADHKGDATFSPEMFCLMADSNVSIHSAIGLQLWPPFF 60

Query: 61  DHYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITL 120
           DHYFCR L+NSWFF  EIFPLAQ L+DFGYTSFSFSIGRDP  A I+FQGP  L+ E+TL
Sbjct: 61  DHYFCRDLKNSWFFFSEIFPLAQYLKDFGYTSFSFSIGRDPHHAQIEFQGPTRLLLEVTL 120

Query: 121 TLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDD 159
            LV+CH  LRIHQFDLSVFVSMDSQ+FSN+ISQYH+FDD
Sbjct: 121 RLVFCHLPLRIHQFDLSVFVSMDSQQFSNLISQYHMFDD 159

[Close]

BLAST of Chy11G202930 vs. NCBI nr
Match: KAA0039748.1 (uncharacterized protein E6C27_scaffold122G00080 [Cucumis melo var. makuwa] >TYK24749.1 uncharacterized protein E5676_scaffold266G003120 [Cucumis melo var. makuwa])

HSP 1 Score: 268 bits (686), Expect = 9.43e-90
Identity = 127/160 (79.38%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 2   MSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFFD 61
           MSFNFVVNNM+TL+DA ATL +AD   DA FSPEMFC+M DSNVSIHS IGLQLWPPFFD
Sbjct: 1   MSFNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNVSIHSTIGLQLWPPFFD 60

Query: 62  HYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITLT 121
           HYFC  LQ SWFF  EIFPLAQDLQD GYTSFSFSIG +PDLA IKFQGP GL+HE    
Sbjct: 61  HYFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFSIGPNPDLAQIKFQGPNGLLHETNFE 120

Query: 122 LVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDDGN 161
           LVY HH LRI  FDLSVFVSMDSQEFSN+ISQYH+FDDGN
Sbjct: 121 LVYSHHPLRIPDFDLSVFVSMDSQEFSNVISQYHMFDDGN 160

[Close]

BLAST of Chy11G202930 vs. NCBI nr
Match: XP_008459734.1 (PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo])

HSP 1 Score: 264 bits (674), Expect = 1.55e-86
Identity = 125/158 (79.11%), Postives = 133/158 (84.18%), Query Frame = 0


Query: 2   MSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFFD 61
           MSFNFVVNNM+TL+DA ATL +AD   DA FSPEMFC+M DSNVSIHS IGLQLWPPFFD
Sbjct: 1   MSFNFVVNNMQTLIDALATLGVADQLADATFSPEMFCVMVDSNVSIHSTIGLQLWPPFFD 60

Query: 62  HYFCRHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRDPDLAHIKFQGPGGLVHEITLT 121
           HYFC  LQ SWFF  EIFPLAQDLQD GYTSFSFSIG +PDLA IKFQGP GL+HE    
Sbjct: 61  HYFCSELQYSWFFFNEIFPLAQDLQDSGYTSFSFSIGPNPDLAQIKFQGPNGLLHETNFE 120

Query: 122 LVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFDD 159
           LVY HH LRI  FDLSVFVSMDSQEFSN+ISQYH+FDD
Sbjct: 121 LVYSHHPLRIPDFDLSVFVSMDSQEFSNVISQYHMFDD 158

[Close]

BLAST of Chy11G202930 vs. NCBI nr
Match: XP_038876014.1 (uncharacterized protein LOC120068348 [Benincasa hispida])

HSP 1 Score: 201 bits (512), Expect = 6.43e-62
Identity = 97/159 (61.01%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 2   MSFNFVVNNMRTLVDAFATLAMADYTGDAIFSPEMFCLMADSNVSIHSAIGLQLWPPFFD 61
           M FNFVVN+MRTL++A   + M D   D  FSPEM C+MADS VSI +AIG+QLWPPFFD
Sbjct: 1   MLFNFVVNDMRTLINAATAVGMVDTMADVTFSPEMLCIMADSYVSIKAAIGIQLWPPFFD 60

Query: 62  HYFC-RHLQNSWFFLGEIFPLAQDLQDFGYTSFSFSIGRD-PDLAHIKFQGPGGLVHEIT 121
           HYFC  +LQ SWF+L +IFPL  +L D GYTSF+FSI     + A +KF+GP GL+HEI 
Sbjct: 61  HYFCINNLQRSWFYLTKIFPLTLELLDSGYTSFTFSIIEPYEERAKLKFEGPNGLLHEIE 120

Query: 122 LTLVYCHHSLRIHQFDLSVFVSMDSQEFSNIISQYHVFD 158
             L Y HH L + +FDLSVFVS+DSQEFS+I+ +YH+FD
Sbjct: 121 FKLYYSHHPLYVGEFDLSVFVSLDSQEFSSIVDEYHMFD 159

The following BLAST results are available for this feature:

BLAST of Chy11G202930 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G202930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIF2	9.8e-70	81.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G848840 PE=4 SV=1	[more]
A0A5A7TA03	2.4e-68	79.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CBB9	6.0e-67	79.11	uncharacterized protein LOC103498776 OS=Cucumis melo OX=3656 GN=LOC103498776 PE=...	[more]
A0A0A0KFM5	2.2e-37	52.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106730 PE=4 SV=1	[more]
A0A0A0KA18	8.4e-37	53.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G006750 PE=4 SV=1	[more]

BLAST of Chy11G202930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652354.1	5.12e-90	81.76	uncharacterized protein LOC101206630 isoform X2 [Cucumis sativus]	[more]
XP_004146827.2	5.65e-90	81.76	uncharacterized protein LOC101206630 isoform X1 [Cucumis sativus] >KGN59826.1 hy...	[more]
KAA0039748.1	9.43e-90	79.38	uncharacterized protein E6C27_scaffold122G00080 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_008459734.1	1.55e-86	79.11	PREDICTED: uncharacterized protein LOC103498776 [Cucumis melo]	[more]
XP_038876014.1	6.43e-62	61.01	uncharacterized protein LOC120068348 [Benincasa hispida]	[more]

BLAST of Chy11G202930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.70.10.10		coord: 4..160 e-value: 1.2E-6 score: 29.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G202930.1	Chy11G202930.1	mRNA