Chy11G201780 (gene) Cucumber (hystrix) v1

Overview
NameChy11G201780
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description30S ribosomal protein S1, chloroplastic
LocationchrH11: 22553784 .. 22554194 (-)
RNA-Seq ExpressionChy11G201780
SyntenyChy11G201780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATACTTACTGCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGTAATTCTATTTTCATTGCTTGTATTTTCAGAAGGTATTCCTTTTTCACTTTTCAATTCTTATCGTTATAGAGTGCATATTTGGTTTCCAAGTCTTTTACCCCCATATATTTAACCCCTAGCATGACATGAACCATTATCTGACATTGTGTACAGGAGCTCCAAAATTCATGGTTTTACCTCCACCCATTCAATTTCTACTCATAGGTTTATTGATTGTATACTATTCTAGGCAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCGTGCAGGCGGCCTACTCCGATTTCACCCGAAGGTACTTATTAGTTATTTGTTTGTCATGGATTTTTCAGCTTAG

mRNA sequence

ATGATACTTACTGCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGCAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCGTGCAGGCGGCCTACTCCGATTTCACCCGAAGGTACTTATTAGTTATTTGTTTGTCATGGATTTTTCAGCTTAG

Coding sequence (CDS)

ATGATACTTACTGCTGAAGACAAGATTCACAAACCAAAGCTTGTTTTTGAGAAGGCAGACGAGATGGTTGAGATGTTCAGGCAAAGAATAGCTCAAGCAATGGCTCGTGCAGGCGGCCTACTCCGATTTCACCCGAAGGTACTTATTAGTTATTTGTTTGTCATGGATTTTTCAGCTTAG

Protein sequence

MILTAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARAGGLLRFHPKVLISYLFVMDFSA*
Homology
[Close]
BLAST of Chy11G201780 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK 47
           T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+
Sbjct: 337 TPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPE 380

[Close]
BLAST of Chy11G201780 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.0e-06
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK 47
           T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+
Sbjct: 334 TPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPE 377

[Close]
BLAST of Chy11G201780 vs. ExPASy TrEMBL
Match: A0A0A0KB49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000070 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 50/68 (73.53%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 1  MILTAEDKIHKPKLVFEKA------------DEMVEMFRQRIAQAMARAGGLLRFHPKVL 57
          MILT EDKIHKPKLVFEK             DEMVEMFRQRIAQAMA AGGLL FHPK+L
Sbjct: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60

[Close]
BLAST of Chy11G201780 vs. ExPASy TrEMBL
Match: A0A445G1E6 (30S ribosomal protein S1, chloroplastic isoform B OS=Glycine soja OX=3848 GN=D0Y65_044797 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 32/54 (59.26%), Postives = 37/54 (68.52%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLISYLFVMD 57
           T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+V I  LFV +
Sbjct: 335 TPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPEVFIGLLFVQN 388

[Close]
BLAST of Chy11G201780 vs. ExPASy TrEMBL
Match: A0A3S3PZD1 (Ribosomal protein S1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00483800 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-05
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLISY 52
           T  D I  PKLVFEKADEM ++FRQRIAQA A A   +LRF P+V I+Y
Sbjct: 335 TPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARADMLRFQPEVFINY 383

[Close]
BLAST of Chy11G201780 vs. ExPASy TrEMBL
Match: A0A6J1L0J3 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499271 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 7   DKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLIS 51
           D +H PKLVFEKADEM + FRQRIAQA A A   LL F P++L++
Sbjct: 334 DMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAELLEFQPELLLA 378

[Close]
BLAST of Chy11G201780 vs. ExPASy TrEMBL
Match: A0A6J1H453 (30S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111459974 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-04
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 0 

Query: 7   DKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPKVLIS 51
           D +H PKLVFEKADEM + FRQRIAQA A A   LL F P++L++
Sbjct: 334 DMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAELLEFQPELLLA 378

[Close]
BLAST of Chy11G201780 vs. NCBI nr
Match: KGN45607.1 (hypothetical protein Csa_005067 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 5.75e-23
Identity = 50/68 (73.53%), Postives = 52/68 (76.47%), Query Frame = 0 

Query: 1  MILTAEDKIHKPKLVFEKA------------DEMVEMFRQRIAQAMARAGGLLRFHPKVL 56
          MILT EDKIHKPKLVFEK             DEMVEMFRQRIAQAMA AGGLL FHPK+L
Sbjct: 1  MILTPEDKIHKPKLVFEKVVLFSLLVFSEGRDEMVEMFRQRIAQAMALAGGLLGFHPKLL 60

[Close]
BLAST of Chy11G201780 vs. NCBI nr
Match: RZB55052.1 (30S ribosomal protein S1, chloroplastic isoform B [Glycine soja])

HSP 1 Score: 59.3 bits (142), Expect = 2.55e-08
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLISYLFVMD 56
           T  D I  PKLVFEKA+EM + FRQRIAQA  MARA  +LRF P+V I  LFV +
Sbjct: 335 TPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARAD-MLRFQPEVFIGLLFVQN 388

[Close]
BLAST of Chy11G201780 vs. NCBI nr
Match: RWR76397.1 (Ribosomal protein S1 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 59.3 bits (142), Expect = 2.56e-08
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLISY 51
           T  D I  PKLVFEKADEM ++FRQRIAQA  MARA  +LRF P+V I+Y
Sbjct: 335 TPGDMIRNPKLVFEKADEMAQIFRQRIAQAEAMARAD-MLRFQPEVFINY 383

[Close]
BLAST of Chy11G201780 vs. NCBI nr
Match: XP_022958818.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 55.5 bits (132), Expect = 5.85e-07
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 7   DKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLIS 50
           D +H PKLVFEKADEM + FRQRIAQA  MARA  LL F P++L++
Sbjct: 334 DMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAE-LLEFQPELLLA 378

[Close]
BLAST of Chy11G201780 vs. NCBI nr
Match: XP_023006590.1 (30S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 55.5 bits (132), Expect = 5.85e-07
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 7   DKIHKPKLVFEKADEMVEMFRQRIAQA--MARAGGLLRFHPKVLIS 50
           D +H PKLVFEKADEM + FRQRIAQA  MARA  LL F P++L++
Sbjct: 334 DMLHNPKLVFEKADEMAQTFRQRIAQAEAMARAE-LLEFQPELLLA 378

[Close]
BLAST of Chy11G201780 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 50.4 bits (119), Expect = 5.7e-07
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0 

Query: 4   TAEDKIHKPKLVFEKADEMVEMFRQRIAQAMARA-GGLLRFHPK 47
           T  D I  PKLVFEKA+EM + FRQRIAQA A A   +LRF P+
Sbjct: 337 TPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPE 380

The following BLAST results are available for this feature:
BLAST of Chy11G201780 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93VC78.0e-0661.3630S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ... [more]
P293448.0e-0661.3630S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=... [more]
BLAST of Chy11G201780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KB491.2e-1573.53Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G000070 PE=4 SV=1[more]
A0A445G1E61.1e-0559.2630S ribosomal protein S1, chloroplastic isoform B OS=Glycine soja OX=3848 GN=D0Y... [more]
A0A3S3PZD11.1e-0563.27Ribosomal protein S1 OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_004... [more]
A0A6J1L0J31.6e-0462.2230S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3... [more]
A0A6J1H4531.6e-0462.2230S ribosomal protein S1, chloroplastic-like isoform X1 OS=Cucurbita moschata OX... [more]
BLAST of Chy11G201780 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45607.15.75e-2373.53hypothetical protein Csa_005067 [Cucumis sativus][more]
RZB55052.12.55e-0861.8230S ribosomal protein S1, chloroplastic isoform B [Glycine soja][more]
RWR76397.12.56e-0866.00Ribosomal protein S1 [Cinnamomum micranthum f. kanehirae][more]
XP_022958818.15.85e-0765.2230S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita moschata][more]
XP_023006590.15.85e-0765.2230S ribosomal protein S1, chloroplastic-like isoform X1 [Cucurbita maxima][more]
BLAST of Chy11G201780 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G30510.15.7e-0761.36ribosomal protein S1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G201780.1Chy11G201780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
molecular_function GO:0003676 nucleic acid binding