Chy11G201730 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G201730
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	HECT-type E3 ubiquitin transferase
Location	chrH11: 22463473 .. 22464073 (+)
RNA-Seq Expression	Chy11G201730
Synteny	Chy11G201730

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGCATTTTTGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACATCATAATAGGTAATTAGTTTTTTCCATTTCAACATTCCTTATTAAAAACTTATCCGTTTTAACGTTTTGAATGGACAAACAGATGTTTGATCTGTCATTGTTGATTTTGTTGGCTTTCTATGCTATGATCCTTTAATTGTATATGATATATTTCTTTTGTTGAAAAGTGATATACTTCTTAGATTTTGTTCAGATATATTAATTGACATAAAGGTTTTTTCTCACCTTCAGCTAACGAATTCAGACTAATCTTATTTATATATATGATAAGTTGCCTTTATTTTTCCTCCGAATTATTCTTACTTGATGTTGTTCTGGATAGAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCGACTCTATTGTTAGACACAACTGTTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGCTACTTCCTGGACAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAG

mRNA sequence

ATGTTGAGCATTTTTGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACATCATAATAGAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCGACTCTATTGTTAGACACAACTGTTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGCTACTTCCTGGACAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAG

Coding sequence (CDS)

ATGTTGAGCATTTTTGCTGGCAAGGATTATTTACTTAACAAGGCCTTAGTGGATTACAGAGTTAAGAAATTTGCATATGCTTGCATCCAGACTGTACATCATAATAGAAACCAATTGAGGAATCAACTTTTGGCTGCACCTGTGAACTCTAACACACCTGCGACTCTATTGTTAGACACAACTGTTTTCTTATTACAACCTGAACTCCCATGGGTTTGTAAAATTGTTGGCTACTTCCTGGACAGAAATGCATATGCGTTGATTAGGGATATCACTTTGACAGGGAAG

Protein sequence

MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDTTVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK

Homology

[Close]

BLAST of Chy11G201730 vs. ExPASy Swiss-Prot
Match: Q8RWB8 (E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-20
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           ++S+F+G DY     LVD+RVKK A+ CI+ +H NRN+LR+QLL  P  ++    +L++ 
Sbjct: 131 IVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEASISTAILMEA 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
              LL P+LPWVCKIV Y   R  + L+R++  T K
Sbjct: 191 VSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAK 226

[Close]

BLAST of Chy11G201730 vs. ExPASy TrEMBL
Match: A0A5D3BV28 (HECT-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00550 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           +LSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVN NTPAT+LLDT
Sbjct: 131 ILSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNPNTPATVLLDT 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
            VFLLQP LPWVCKIVGYFL+RNAYALIRDITLTGK
Sbjct: 191 IVFLLQPGLPWVCKIVGYFLERNAYALIRDITLTGK 226

[Close]

BLAST of Chy11G201730 vs. ExPASy TrEMBL
Match: A0A1S3C746 (HECT-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497770 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 90/96 (93.75%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           +LSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVN NTPAT+LLDT
Sbjct: 131 ILSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNPNTPATVLLDT 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
            VFLLQP LPWVCKIVGYFL+RNAYALIRDITLTGK
Sbjct: 191 IVFLLQPGLPWVCKIVGYFLERNAYALIRDITLTGK 226

[Close]

BLAST of Chy11G201730 vs. ExPASy TrEMBL
Match: A0A6J1H445 (HECT-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459968 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           +LSIFAGKDYL NKALVDYRVKKFAYACIQTV+HNRNQLRNQL AAP NS+TPATLLLD 
Sbjct: 131 VLSIFAGKDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENSSTPATLLLDA 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
            VFLLQPELPWVCKIVGYFL+RNAY LIRDITL GK
Sbjct: 191 IVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGK 226

[Close]

BLAST of Chy11G201730 vs. ExPASy TrEMBL
Match: A0A6J1H671 (HECT-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459968 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.3e-40
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           +LSIFAGKDYL NKALVDYRVKKFAYACIQTV+HNRNQLRNQL AAP NS+TPATLLLD 
Sbjct: 63  VLSIFAGKDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENSSTPATLLLDA 122

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
            VFLLQPELPWVCKIVGYFL+RNAY LIRDITL GK
Sbjct: 123 IVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGK 158

[Close]

BLAST of Chy11G201730 vs. ExPASy TrEMBL
Match: A0A6J1L098 (HECT-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499207 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 4.8e-40
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           +LSIFAG DYL NKALVDYRVKKFAYACIQTV+HNRNQLRNQL AAP NS+TPATLLLD 
Sbjct: 131 VLSIFAGNDYLSNKALVDYRVKKFAYACIQTVYHNRNQLRNQLFAAPENSSTPATLLLDA 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
            VFLLQPELPWVCKIVGYFL+RNAY LIRDITL GK
Sbjct: 191 IVFLLQPELPWVCKIVGYFLERNAYVLIRDITLAGK 226

[Close]

BLAST of Chy11G201730 vs. NCBI nr
Match: XP_031743806.1 (E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus] >KAE8647029.1 hypothetical protein Csa_023002 [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 6.26e-58
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
          MLSIFA KDY+LNKALVDYRVKKFAYACIQ VHHNRNQLRNQLLAAPVNSNTPATLLLDT
Sbjct: 1  MLSIFASKDYVLNKALVDYRVKKFAYACIQIVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60

Query: 61 TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 96
           VFLLQP+LPWVCKIVGYFL+RNAY L+RDITLTGK
Sbjct: 61 IVFLLQPKLPWVCKIVGYFLERNAYPLMRDITLTGK 96

[Close]

BLAST of Chy11G201730 vs. NCBI nr
Match: XP_031743141.1 (E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 6.26e-58
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
          MLSIFA KDY+LNKALVDYRVKKFAYACIQ VHHNRNQLRNQLLAAPVNSNTPATLLLDT
Sbjct: 1  MLSIFASKDYVLNKALVDYRVKKFAYACIQIVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60

Query: 61 TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 96
           VFLLQP+LPWVCKIVGYFL+RNAY L+RDITLTGK
Sbjct: 61 IVFLLQPKLPWVCKIVGYFLERNAYPLMRDITLTGK 96

[Close]

BLAST of Chy11G201730 vs. NCBI nr
Match: XP_031743140.1 (E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus] >KAE8647025.1 hypothetical protein Csa_019097 [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 1.75e-57
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
          MLSIFA KDY+LNKALVDYRVKKFAYACIQ VHHNRNQLRNQLLAAPVNSNTPATLLLDT
Sbjct: 1  MLSIFASKDYVLNKALVDYRVKKFAYACIQIVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60

Query: 61 TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 96
           VFLLQP+LPWVCKIVGYFL+RNAY L+RDITLTGK
Sbjct: 61 IVFLLQPKLPWVCKIVGYFLERNAYPLMRDITLTGK 96

[Close]

BLAST of Chy11G201730 vs. NCBI nr
Match: XP_031742863.1 (E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus])

HSP 1 Score: 184 bits (466), Expect = 1.93e-57
Identity = 88/96 (91.67%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 1  MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
          MLSIFA KDY+LNKALVDYRVKKFAYACIQ VHHNRNQLRNQLLAAPVNSNTPATLLLDT
Sbjct: 1  MLSIFASKDYVLNKALVDYRVKKFAYACIQIVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60

Query: 61 TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 96
           VFLLQP+LPWVCKIVGYFL+RNAY L+RDITLTGK
Sbjct: 61 IVFLLQPKLPWVCKIVGYFLERNAYPLMRDITLTGK 96

[Close]

BLAST of Chy11G201730 vs. NCBI nr
Match: XP_031743101.1 (E3 ubiquitin-protein ligase UPL6 [Cucumis sativus])

HSP 1 Score: 194 bits (493), Expect = 3.90e-55
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT
Sbjct: 131 MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 96
            VFLLQPELPWVCKIVGYFL+RNAYALIRDITLTGK
Sbjct: 191 IVFLLQPELPWVCKIVGYFLERNAYALIRDITLTGK 226

[Close]

BLAST of Chy11G201730 vs. TAIR 10
Match: AT3G17205.1 (ubiquitin protein ligase 6 )

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           ++S+F+G DY     LVD+RVKK A+ CI+ +H NRN+LR+QLL  P  ++    +L++ 
Sbjct: 131 IVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEASISTAILMEA 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
              LL P+LPWVCKIV Y   R  + L+R++  T K
Sbjct: 191 VSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAK 226

[Close]

BLAST of Chy11G201730 vs. TAIR 10
Match: AT3G17205.2 (ubiquitin protein ligase 6 )

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           ++S+F+G DY     LVD+RVKK A+ CI+ +H NRN+LR+QLL  P  ++    +L++ 
Sbjct: 131 IVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEASISTAILMEA 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
              LL P+LPWVCKIV Y   R  + L+R++  T K
Sbjct: 191 VSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAK 226

[Close]

BLAST of Chy11G201730 vs. TAIR 10
Match: AT3G17205.3 (ubiquitin protein ligase 6 )

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-21
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 1   MLSIFAGKDYLLNKALVDYRVKKFAYACIQTVHHNRNQLRNQLLAAPVNSNTPATLLLDT 60
           ++S+F+G DY     LVD+RVKK A+ CI+ +H NRN+LR+QLL  P  ++    +L++ 
Sbjct: 131 IVSLFSGLDYSSEHNLVDFRVKKLAFTCIEAIHQNRNRLRDQLLVTPEEASISTAILMEA 190

Query: 61  TVFLLQPELPWVCKIVGYFLDRNAYALIRDITLTGK 97
              LL P+LPWVCKIV Y   R  + L+R++  T K
Sbjct: 191 VSLLLDPKLPWVCKIVSYLQKRKVFKLVREMVTTAK 226

The following BLAST results are available for this feature:

BLAST of Chy11G201730 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWB8	1.8e-20	44.79	E3 ubiquitin-protein ligase UPL6 OS=Arabidopsis thaliana OX=3702 GN=UPL6 PE=2 SV...	[more]

BLAST of Chy11G201730 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BV28	1.2e-43	93.75	HECT-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C746	1.2e-43	93.75	HECT-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497770 PE=4 ...	[more]
A0A6J1H445	1.3e-40	88.54	HECT-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459968...	[more]
A0A6J1H671	1.3e-40	88.54	HECT-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111459968...	[more]
A0A6J1L098	4.8e-40	87.50	HECT-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499207 P...	[more]

BLAST of Chy11G201730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743806.1	6.26e-58	91.67	E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus] >KAE8647029.1 hypothetic...	[more]
XP_031743141.1	6.26e-58	91.67	E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus]	[more]
XP_031743140.1	1.75e-57	91.67	E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus] >KAE8647025.1 hypothetic...	[more]
XP_031742863.1	1.93e-57	91.67	E3 ubiquitin-protein ligase UPL6-like [Cucumis sativus]	[more]
XP_031743101.1	3.90e-55	97.92	E3 ubiquitin-protein ligase UPL6 [Cucumis sativus]	[more]

BLAST of Chy11G201730 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17205.1	1.3e-21	44.79	ubiquitin protein ligase 6	[more]
AT3G17205.2	1.3e-21	44.79	ubiquitin protein ligase 6	[more]
AT3G17205.3	1.3e-21	44.79	ubiquitin protein ligase 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45700:SF7	BNAC01G43970D PROTEIN	coord: 1..96
IPR044611	Ubiquitin-protein ligase E3B/C	PANTHER	PTHR45700	UBIQUITIN-PROTEIN LIGASE E3C	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G201730.1	Chy11G201730.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000209	protein polyubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
molecular_function	GO:0061630	ubiquitin protein ligase activity