Chy11G201640 (gene) Cucumber (hystrix) v1

Overview
NameChy11G201640
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Descriptionflowering time control protein FCA-like
LocationchrH11: 22411084 .. 22414318 (-)
RNA-Seq ExpressionChy11G201640
SyntenyChy11G201640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCGGCGGCACGGAGGGGGAGACGTTGGCGGTGTAGTCAAAGCTTGGTTCATTTATTTTCTACGTTTTTTTTTTGCAAATGCATGGGGAGTTCAAATATAATAAAGTTTGTGTTGTTTAAAAATTAATAATTAATGGTTAGTTATGTCGCTAATTACGATTATAGAATAATCCGATCTTTAGAATTTGAATAACAATATAGATTAGATGGCCAATTTTAAATGTTGTCTAGCCACTTTGTTTCGTATTAGGGATTGTTTCCCTTGTTTATAGTTGTAATTTTGTTATATGATTCTACCTTTTATATTTCTAAACACAATTTTTTCGATGATTAGGTTAAAGAGATGTTAGTTATTGATAGTTTATATAATCTCCGAGTTAGAAGACTACGTTCTCGTTCATAATTATTGCACTCTAAAATGTAAAATATAGATGATTAATTTTGAATAGTGAGACTTTTTCTTCGTCATATATATGTGTAATAATCTAGCAATTTTAGTTTTTTTTTTTTTTTTTTTTGCCTTTTTTCAATGATTTATTTGTATTATCTTCGTTATCGGAGGATTAATGTATGCTTATTGAATTTTTGTGTTTGGTTTATTTAATTAAAAATAAACATTTTTCGATGGTTCATGGAAAAGAAGTCACCTTTCACGAATACCATATTTTCTCTTCGTTGTTGAATGGGAAAGTGAGAAAGAAGAAGAAAAAAAGTTTAATCTTTATATTATGAATTTATTATTTGTTGTGTTTTTTAAATCTAAAAAAGTATATGGGTATCAAAATTTTATATTTTATGTCTAACGAACCCATTATATATAGATGTAATGATTGACTTGTTTAAAAATTTTCAATTTATTGTATGATAAGTTTGTAATGTGTTCGTTGTTTAAAATTTTGATGATTATATGGTTAGATAGAATGTTAACTTTTATATTTGATAATTCATCACATTCTAGAGTGTCCAAGGTTGATGACCTATTAGATAACAACCAAATGATTTTGTAAGTACACTAGTTTGTTTAGTACAATATAAAGCAAGGAAAACTGAGAACGAAACACGTCAAGATTAAATGTCAAATTTGTTAAGTATAAATGTCATCAAGCCATATTTTATAATGACTGAGTTTTAGAGTGTGAGTGGATAACTCATGTGTAGTATAGTTCCACGTACTAAAAAAAAATTATGAACATATATCCCCATCGATGAATGTCACAAATAAAACCAACGAACACTTAATTTCAGTTAGATAACTAATTATTCCAACCCGAAAGTTTCATGAGGTATAAAAACTAATTTCAACCCACTGGAGGGATGTCATGAACTTGAAAATTAATCAATTGTATCTTACAAAGTTCAAGAACCCAACGAAGATAAATAAATATATATATACACTAAAACATTGTTTTGATTCATAAACTTCATTCTATTATAGACAATGTACTCTTGATTGTCATTGTAGTTTCACACTTTCGATCATTTTTAATTTTAACTGCCTAAACATTAATTTATAGTGAAATGTTATACTGAACAACGACAGTAATTACAACACAGTGAATAGAAATTTATGCAGATATATCAATGATCCAAACTATTATCAAACACGATACCATGCAAGATCATTCACATGTATAATAAAATTTAAATTCAATTATGAAATGCAACTACATCACTAATAGTCAACTACATATTATATTAGTGACAAGTCAATCAACACTGAGTTTTGTTGTATTTTAATTATTTCAAATAACTGCCATCACTTAATTATTAGCCACAAAAGTTGTACTCACGTGAATATATTTTTAAGACGAAAATACATAGAAAATGAAAATTATAGCAAATAGCACCATGATAAAATATCTATAAAAACAGCCCATGCTAACCATTCAACTAGTAATTTTTTTAAAATGTCAATTTCACTATGAAATGGTCATTATCACGAATAGTTTTCAATTTTTTAGAAGCTGAAAAGAAACATTTGAAATGGTAGTTGGATACAAACTTTTTAGTTTTTTTTTATAAGTTTTTGGCTAACTAGTTTTATGCCAGTGACAATTTTTTAAAGGCAACATAAAAATTAGATGTACCATTTATCATAATCGAGACTAAAATTGAGCAAACTTATATGCATATCCCATATTAACTAAAACTTCATAGTTATTTATTTCCCATTTTTCTTTTTGTGGGTTTGTTTCAAATTTAGCCCTTCTTCAAATATATTATCAATCCGCGGGTGTTTCCCCATTTTGGGGGCTTTTCAGAGCTTCTCGGTTCTTGTCTTCGTTTTTAAGGTCATATCCCTTTAGGCCGAAACCTCGGTATCACTCCGAGAGGAGGAGGAGGTCTCCCTTTTTCCGACAGGCTACCTTATGAACCGGCAGGCTACCTTTAACCTTTAGGCCGGGTGTTTCCTTCCGTACCCCTTCCGTTCGTATAACCTTTAGGCCCGATCTGAAAGAAAAATGGACCGATCTTATGGATTCCAGATAGGATCGGTACATAAAATCATGCTAAAATACACTTTTTACGGAGTGAAAATTCTCAAAAATTAGTCTACGGACCAATCTTGCGCCTTGCTACAACAATATTATGACGGACTCAAAATACAGCCTAGATCGGAATGGGCTGCTAAAACAGCCCAATGGGTTTGATGGGCTTATTTACATTCCGGCCCATATAAATGATCGTTGTTTATTATTAAATATACTTCTCTCCTCTACGTGACAGGGCGGGATTCCTCTTTTTGCTCCCGACTCTGACTCCATTTTCTCTTCTTCGCCTCGCTCAAAGGTACCGACCGAGTGCTAAGATTTTGGAATTTCCATTTCACCGTTTTCCAACAGGACTTTACAAATTTTGGGTATTCGTCTTCTCACTTCCGCAAAGCTGGATAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCCTTTCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACGCCCCTGTGAACCACCACGACACTCGACGGAGTCCCAGCAACTTCCGTGGTGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCTCCTCGATACTCTACTCCCCCTGCTGCTGGGTTTCGCCCGATGGGAACTGCCGGGGGATTCCGTCCAATTCCTGGTCCTGGGGATGGTGGCTTTGGGTCCGGTTTCCAGCCGCCACCTGTTGTTGGACAGAAACGGGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAG

mRNA sequence

ATGTGCGGCGGCACGGAGGGGGAGACGTTGGCGGTGACTTTACAAATTTTGGGTATTCGTCTTCTCACTTCCGCAAAGCTGGATAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCCTTTCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACGCCCCTGTGAACCACCACGACACTCGACGGAGTCCCAGCAACTTCCGTGGTGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCTCCTCGATACTCTACTCCCCCTGCTGCTGGGTTTCGCCCGATGGGAACTGCCGGGGGATTCCGTCCAATTCCTGGTCCTGGGGATGGTGGCTTTGGGTCCGGTTTCCAGCCGCCACCTGTTGTTGGACAGAAACGGGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAG

Coding sequence (CDS)

ATGTGCGGCGGCACGGAGGGGGAGACGTTGGCGGTGACTTTACAAATTTTGGGTATTCGTCTTCTCACTTCCGCAAAGCTGGATAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCCTTTCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACGCCCCTGTGAACCACCACGACACTCGACGGAGTCCCAGCAACTTCCGTGGTGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCTCCTCGATACTCTACTCCCCCTGCTGCTGGGTTTCGCCCGATGGGAACTGCCGGGGGATTCCGTCCAATTCCTGGTCCTGGGGATGGTGGCTTTGGGTCCGGTTTCCAGCCGCCACCTGTTGTTGGACAGAAACGGGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAG

Protein sequence

MCGGTEGETLAVTLQILGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYPFAGRGSSPX
Homology
[Close]
BLAST of Chy11G201640 vs. ExPASy TrEMBL
Match: A0A6J1KKH9 (flowering time control protein FCA-like OS=Cucurbita maxima OX=3661 GN=LOC111494860 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.7e-46
Identity = 100/128 (78.12%), Postives = 107/128 (83.59%), Query Frame = 0 

Query: 17  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGV-- 76
           LG R LTSAKLDRHRGDRYGPDQDSHP+RHSAAPSRFSD+PVNHH +RRSP+ F G V  
Sbjct: 122 LGFRFLTSAKLDRHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHYSRRSPNKFSGSVGG 181

Query: 77  AGANRRPFDSPPRYSTP-PAAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYP 136
            G +RRPFDSPP YSTP  AA FRP+GT  GFRPIPG G GGFGS FQPPPV GQKRGYP
Sbjct: 182 GGGHRRPFDSPPPYSTPVGAADFRPIGTGEGFRPIPGTG-GGFGSNFQPPPVAGQKRGYP 241

Query: 137 FAGRGSSP 142
           F+G GSSP
Sbjct: 242 FSGCGSSP 248

[Close]
BLAST of Chy11G201640 vs. ExPASy TrEMBL
Match: A0A6J1H3Q0 (flowering time control protein FCA-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 142
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

[Close]
BLAST of Chy11G201640 vs. ExPASy TrEMBL
Match: A0A6J1H400 (flowering time control protein FCA-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 142
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

[Close]
BLAST of Chy11G201640 vs. ExPASy TrEMBL
Match: A0A6J1H531 (flowering time control protein FCA-like isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 142
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

[Close]
BLAST of Chy11G201640 vs. ExPASy TrEMBL
Match: A0A6J1H743 (flowering time control protein FCA-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111460217 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 5.1e-30
Identity = 69/84 (82.14%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R SP+NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSPNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 142
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

[Close]
BLAST of Chy11G201640 vs. NCBI nr
Match: KAG6594021.1 (Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198 bits (503), Expect = 4.22e-56
Identity = 103/129 (79.84%), Postives = 108/129 (83.72%), Query Frame = 0 

Query: 17  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAG 76
           LG   LTSAKLDRHRGDRYGPDQDSHP RHSAAPSRFSD+PVNHHD+RRSP+ F G V G
Sbjct: 80  LGFPFLTSAKLDRHRGDRYGPDQDSHPHRHSAAPSRFSDSPVNHHDSRRSPNKFSGAVGG 139

Query: 77  A---NRRPFDSPPRYSTPP-AAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGY 136
               +RRPFDSPPRYST   AA FRPMGTAGGFRPIPG G GGFGS FQPPPV GQKRGY
Sbjct: 140 GGGGHRRPFDSPPRYSTSGGAADFRPMGTAGGFRPIPGTG-GGFGSNFQPPPVAGQKRGY 199

Query: 137 PFAGRGSSP 141
            F+GRGSSP
Sbjct: 200 LFSGRGSSP 207

[Close]
BLAST of Chy11G201640 vs. NCBI nr
Match: XP_023000619.1 (flowering time control protein FCA-like [Cucurbita maxima])

HSP 1 Score: 194 bits (493), Expect = 1.42e-54
Identity = 100/128 (78.12%), Postives = 107/128 (83.59%), Query Frame = 0 

Query: 17  LGIRLLTSAKLDRHRGDRYGPDQDSHPFRHSAAPSRFSDAPVNHHDTRRSPSNFRGGVAG 76
           LG R LTSAKLDRHRGDRYGPDQDSHP+RHSAAPSRFSD+PVNHH +RRSP+ F G V G
Sbjct: 122 LGFRFLTSAKLDRHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHYSRRSPNKFSGSVGG 181

Query: 77  A--NRRPFDSPPRYSTPP-AAGFRPMGTAGGFRPIPGPGDGGFGSGFQPPPVVGQKRGYP 136
              +RRPFDSPP YSTP  AA FRP+GT  GFRPIPG G GGFGS FQPPPV GQKRGYP
Sbjct: 182 GGGHRRPFDSPPPYSTPVGAADFRPIGTGEGFRPIPGTG-GGFGSNFQPPPVAGQKRGYP 241

Query: 137 FAGRGSSP 141
           F+G GSSP
Sbjct: 242 FSGCGSSP 248

[Close]
BLAST of Chy11G201640 vs. NCBI nr
Match: KAG6575135.1 (Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139 bits (349), Expect = 6.30e-39
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R S +NFRGGV+G NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSSNNFRGGVSGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 141
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

[Close]
BLAST of Chy11G201640 vs. NCBI nr
Match: XP_023548234.1 (flowering time control protein FCA-like isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143 bits (360), Expect = 1.58e-36
Identity = 70/84 (83.33%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R SP+NFRGGVAG NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSPNNFRGGVAGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 141
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

[Close]
BLAST of Chy11G201640 vs. NCBI nr
Match: XP_023548233.1 (flowering time control protein FCA-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 143 bits (360), Expect = 1.68e-36
Identity = 70/84 (83.33%), Postives = 74/84 (88.10%), Query Frame = 0 

Query: 58  VNHHDTRRSPSNFRGGVAGANRRPFDSPPRYSTPPAAGFRPMGTAGGFRPIPGPGDGGFG 117
           +NH D+R SP+NFRGGVAG NRRPFDSPPR+STP AA FRPMGT GGFRPIPG G GGFG
Sbjct: 1   MNHQDSRWSPNNFRGGVAGGNRRPFDSPPRFSTPGAANFRPMGTGGGFRPIPGTG-GGFG 60

Query: 118 SGFQPPPVVGQKRGYPFAGRGSSP 141
           S FQPPPV GQKRGYPFAGRGSSP
Sbjct: 61  SSFQPPPVAGQKRGYPFAGRGSSP 83

The following BLAST results are available for this feature:
BLAST of Chy11G201640 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G201640 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KKH98.7e-4678.13flowering time control protein FCA-like OS=Cucurbita maxima OX=3661 GN=LOC111494... [more]
A0A6J1H3Q05.1e-3082.14flowering time control protein FCA-like isoform X2 OS=Cucurbita moschata OX=3662... [more]
A0A6J1H4005.1e-3082.14flowering time control protein FCA-like isoform X1 OS=Cucurbita moschata OX=3662... [more]
A0A6J1H5315.1e-3082.14flowering time control protein FCA-like isoform X3 OS=Cucurbita moschata OX=3662... [more]
A0A6J1H7435.1e-3082.14flowering time control protein FCA-like isoform X4 OS=Cucurbita moschata OX=3662... [more]
BLAST of Chy11G201640 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6594021.14.22e-5679.84Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_023000619.11.42e-5478.13flowering time control protein FCA-like [Cucurbita maxima][more]
KAG6575135.16.30e-3980.95Flowering time control protein FCA, partial [Cucurbita argyrosperma subsp. soror... [more]
XP_023548234.11.58e-3683.33flowering time control protein FCA-like isoform X3 [Cucurbita pepo subsp. pepo][more]
XP_023548233.11.68e-3683.33flowering time control protein FCA-like isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of Chy11G201640 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..141

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G201640.1Chy11G201640.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding