Chy11G201040 (gene) Cucumber (hystrix) v1

Overview
NameChy11G201040
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 21849609 .. 21852598 (+)
RNA-Seq ExpressionChy11G201040
SyntenyChy11G201040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTAAATTACTATTTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATGGGTACTCTACAACTAGGCTTGCTTTATTATCCTTAGCATGCCTGATCATGTCCGCCATGGAAGCTACACGAACGAACTTCGTGCCTTTATCTTCTTGCAATGTCCCATATCTGGTGGATGTTTCCCGGCATCTCGTCAAGGGAGTCTAATTCTTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGTTTGCGATCGAGGAACATCCACTGTGAGATGAGATGACTGGTAAATTCATTTTATTCTATATAGACACTAAACTAAATTTCTAATCGTTTTTGCATTCTTCGTTGTCTGTAATTTTCTTTACTAATTAGGAAATTTCACTTTTCAAACACGATGCATTTCACCCAATTTCTTGTGTTTGTTCTTTTCCTTGCTCCTATTGAGCCTGTTGTTTCGAATTAGAAAAGCAAATTTGTTCTTATCGTTATGGAGATTCCATACCATTCATTCCCCTGCATGACGGTCGTTTTCAGGTCGTTTCATTACTATATATCATCTTCGTCGTGGAAATGGAGTTTGATTGGTTATGTAGAATCTTGCATTGGTGGTCCATGTTGTAAAGTATACGCGCCACTACTGTTGCACGCTAGGTGTTTGATGTAATGTCTTTGCATAATTTGGTTACCCCCTGCATAGTTTTTTTTTTTCTTTTCTTTTTTCCTACTTTTAATACGAAAAGTCTTAGCTAATCATTTCTAGGTATAAGATTGAATTATCTCTAGACTGGTCGGATGGTAATCTGTATAGATCATAGGTCCAGATTTCATACATTGTATGAATTACAATACTATTGAAGCCAATATTGTATCTAATCTGTATCATCAAATGGATTGGTTCTATATGTTACAATTGCTTAGACCTTGTTTGTTTTTTAGGTGACCATTTGGTTTTTTGTTTTTAGTTTTTGAAAATTAAAACTATAAATCTCCTTCCACCCCTAAATTAGTTTTTGTTTTTGTTTACCGATGTTTTCAATAAATGTCAAATTTAAAAAATCTGGTTTTGAAATTTGCCTAAGAATTCAAAGATGCAAACTATTGTACTAAAATGGGAGGAAATAGGCTAACTTCAAAAAAGTAAAAATGAAAAATGTAATGGTTAACAATTGGGGCCTTAGATTTTTGTTGTTAAAATTTATACTTGTTTCCTACTAATTTCCATAATTTCCTTTTCTTTCTAAAAATTAGTAGAAGGTAGTTAACCAAATTATTAACTTTTAGGGTAGCAGTGTGTATCGGCTTAATTTTCAAGAAACAACAAACAAAATCAAAATATTATCAAATTGAGTCTTAAAATATCAAGTACTAAGAGTCAAAATCAGATCTAAGTTTTACTTTTTGTTACATAACATCTTTATCTTAACCACCGCCCATTTGCACCCCACGGGGAGGTAAGCTGATTAGCGCAACTTTTTGAATTCTGTTTGGATCCTTATTGATAAGAGAAATCAGCGTTTTAGTCCTTTAATGATGAAAAGTAACTGTTAGTCAAGCTTGCTTTCTGTTGGCTGAAATGTTGGACTAAAACTCCGTTGGCTAAGGTTCATTCCCTGGAAATTAGTTGAAGGGTCAGCAATCAGAGGACAAAAAAAGGAAGCGATCTTGCACGACAATTCATTAAATTAAGTCTAAAGAAGCATAAAGCCACGCTGTTCTCTAATTGTTTAACATTATTTTGCTGCCTTTCTTGCACACAGGGAAGGAAGCTGGATTCAACTTTTGATTACTTCTTCCCGTTTGAGTTTGAATCAAGAAGAACGCCGTACCCCAAGAAATGGATGACAGGTAAGACAATCAGATTTATACAGCTTATTTGCCTCCCAAACATGCACAAAGGCCTTAAATTTAGCTAAGCCTTTTATTTTTCACTTAATGGAGTACCCAACCCCAAGACAGGAGCATTTATCAAAGGTTTTGTATGATTTAGGTGCTGCTTTGGGAATCATGATACGAAACTGTTTTAGACTTTTCAAAACAATATTTTACTGTTTTCTACAGTAAACCAGGTTGGATTCTAAATTTTTCATACTTGTTTCCAGTTGAGTTGATCTAAAAGATGTTTAACTTGAGAAGTTCTTTGAACATAGAAATGAAGATTAAAGAACATGTATACAACAACAGGATTTATTTTCAAGTACAACTTTACAAAAGAATTTGAACGATTGTTATATAGTCAATAAAGTCAAAGTAAAAAGTAAAGGAGTTCAAGAGGAAAGAAGTCTAAATCATGATGGCCACCTACTTATATTTAAATATTCTATTAATATTTTTGGTAGTCGAGTCTAGTTGAGGTATGCGTTACTCGTTAGTTGGTATGGTCACTCAAACATAAGAAGATTATTATATAGAAAAATATCCCAATGATATTATTTGAATATCAACTTAGACATCCCGATCGAAGCTTTGGGTAAACTTAAGGAAAAGCTCTCGATGTCTCAAGAGTTTGGGCCATGGGACAGGAGCGCCACAAACTTTTTAAAAGAAGAATTATATTAGAAATTGGAGAGCTGTAAATCCACTTCTATATGATTCAATTTTGGACCACTTTTTTGGTTATTAGATATCTTGGTTCAGCGTTGCTTTGTACCAAAAAGAAAGAAGAATCAAGCTAGTGTGATGTGGTATATACCAGATTCTAAGTTATATCACATGTCTAAGTTATCAGTTATTATCATAAGTTGATAGGAATATTTCTTTACGTCATCATGTGTAAAAAAGGTATTCTCAGAACAAGGAAAAAGAAAACCCCCATAAATTTGGCTGCTGGGCTTCCATAACTGAAGAGCTAGCCTTGGAAATGACTACATTGTCCAACATTGTATTTAGTATAGTCGAAGAATATGATAGTCGTATTGTTAAAGGATTGTTTATGAGCCATGCATTTGCATGTACGAAATACACTGTTGCGTAG

mRNA sequence

ATGGAGTTAAATTACTATTTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATGGGTACTCTACAACTAGGCTTGCTTTATTATCCTTAGCATGCCTGATCATGTCCGCCATGGAAGCTACACGAACGAACTTCGTGCCTTTATCTTCTTGCAATGTCCCATATCTGGTGGATGTTTCCCGGCATCTCGTCAAGGGAGTCTAATTCTTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGTCGTTTCATTACTATATATCATCTTCGTCGTGGAAATGGAGTTTGATTGGTTATGTAGAATCTTGCATTGGTGGTCCATGTTGTAAAGGAAGGAAGCTGGATTCAACTTTTGATTACTTCTTCCCGTTTGAGTTTGAATCAAGAAGAACGCCGTACCCCAAGAAATGGATGACAGGAATATTTCTTTACGTCATCATGTGTAAAAAAGGTATTCTCAGAACAAGGAAAAAGAAAACCCCCATAAATTTGGCTGCTGGGCTTCCATAACTGAAGAGCTAGCCTTGGAAATGACTACATTGTCCAACATTGTATTTAGTATAGTCGAAGAATATGATAGTCGTATTGTTAAAGGATTGTTTATGAGCCATGCATTTGCATGTACGAAATACACTGTTGCGTAG

Coding sequence (CDS)

ATGGAGTTAAATTACTATTTTAATCGAAATCGAGAAAGTTGGGGAACAATCGTGTTGTTGGTGCTGCAATATGGGTACTCTACAACTAGGCTTGCTTTATTATCCTTAGCATGCCTGATCATGTCCGCCATGGAAGCTACACGAACGAACTTCGTGCCTTTATCTTCTTGCAATGTCCCATATCTGGTGGATGTTTCCCGGCATCTCGTCAAGGGAGTCTAATTCTTCGTCAATGGGAGTTGAAAAGCGAACAGCATTATAGTCGTTTCATTACTATATATCATCTTCGTCGTGGAAATGGAGTTTGATTGGTTATGTAGAATCTTGCATTGGTGGTCCATGTTGTAAAGGAAGGAAGCTGGATTCAACTTTTGATTACTTCTTCCCGTTTGAGTTTGAATCAAGAAGAACGCCGTACCCCAAGAAATGGATGACAGGAATATTTCTTTACGTCATCATGTGTAAAAAAGGTATTCTCAGAACAAGGAAAAAGAAAACCCCCATAAATTTGGCTGCTGGGCTTCCATAACTGAAGAGCTAGCCTTGGAAATGACTACATTGTCCAACATTGTATTTAGTATAGTCGAAGAATATGATAGTCGTATTGTTAAAGGATTGTTTATGAGCCATGCATTTGCATGTACGAAATACACTGTTGCGTAG

Protein sequence

MELNYYFNRNRESWGTIVLLVLQYGYSTTRLALLSLACLIMSAMEATRTNFVPLSSCNVPYLVDVSRHLVKGV*FFVNGS*KANSIIVVSLLYIIFVVEMEFDWLCRILHWWSML*RKEAGFNF*LLLPV*V*IKKNAVPQEMDDRNISLRHHV*KRYSQNKEKENPHKFGCWASITEELALEMTTLSNIVFSIVEEYDSRIVKGLFMSHAFACTKYTVA*
Homology
[Close]
BLAST of Chy11G201040 vs. ExPASy TrEMBL
Match: A0A0A0KD32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G319740 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MELNYYFNRNRESWGTIVLLVLQYGYSTTRLALLSLACLIMSAMEATRTNFV 53
          MELNYYFNRNRESWGTIVLLVLQYGYS TRLALLSLAC IMSAMEAT+TNFV
Sbjct: 1  MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFV 52

[Close]
BLAST of Chy11G201040 vs. NCBI nr
Match: KGN47428.1 (hypothetical protein Csa_021710 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.75e-22
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MELNYYFNRNRESWGTIVLLVLQYGYSTTRLALLSLACLIMSAMEATRTNFV 52
          MELNYYFNRNRESWGTIVLLVLQYGYS TRLALLSLAC IMSAMEAT+TNFV
Sbjct: 1  MELNYYFNRNRESWGTIVLLVLQYGYSRTRLALLSLACRIMSAMEATQTNFV 52

The following BLAST results are available for this feature:
BLAST of Chy11G201040 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G201040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KD321.7e-1694.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G319740 PE=4 SV=1[more]
BLAST of Chy11G201040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47428.14.75e-2294.23hypothetical protein Csa_021710 [Cucumis sativus][more]
BLAST of Chy11G201040 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G201040.1Chy11G201040.1mRNA