Chy11G200400 (gene) Cucumber (hystrix) v1

Overview
NameChy11G200400
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 21368313 .. 21369116 (-)
RNA-Seq ExpressionChy11G200400
SyntenyChy11G200400
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGGATAGGTGACACGAAACCCACCATCAAATTAAAATGTGAAGCAATATATCCCAACACCTACCACCTTTTTCAAAACCCACAAATTAAATCTCCCTAACAAAAATGATAATAAAATTAAAAAATTATATATATATATATATATATAACTATAATTAATGTAGTTCTTGTCACCCACACATGCATTTACATTTAAATCCCTTCCATTTAATTTTAGCAAAAACACACTATAAAAACATGCACAATAATTTGAAATTTTTCCCACAATCACAACTCAACTAACCCCACCTCCCAAAAACCAAAAGCTAGAAAAAAAGACCCAATTATATATCTTTTTTATTCCTCATAAACCACCAAAATTGATTTTTATTTATTTATAATAATAATCAATAACCCACCATATATGGACCAAATCAAAGATGCTTCTTCAATTTTTCTATGGGAAGATAGTGCAGATTCTGAGGTTGATAAACTATTGTCTCATCCTCCTCATGAATTAGAGTCTGCTGTGGATGATGATGATCAGGAGGATGCTTGCTCCTGCAGTTTCAATAATAATGATTTTTCTATTGATGATTTCCAAGATGATGGCCGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGGGCAGCGCTTGAGTATGGTTACGAAGAAGAGGATGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAAGTCTTTTGGGACACTTGCATGGCGGGAGGGTACCCCTGA

mRNA sequence

ATGGAGTGGATAGATAGTGCAGATTCTGAGGTTGATAAACTATTGTCTCATCCTCCTCATGAATTAGAGTCTGCTGTGGATGATGATGATCAGGAGGATGCTTGCTCCTGCAGTTTCAATAATAATGATTTTTCTATTGATGATTTCCAAGATGATGGCCGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGGGCAGCGCTTGAGTATGGTTACGAAGAAGAGGATGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAAGTCTTTTGGGACACTTGCATGGCGGGAGGGTACCCCTGA

Coding sequence (CDS)

ATGGAGTGGATAGATAGTGCAGATTCTGAGGTTGATAAACTATTGTCTCATCCTCCTCATGAATTAGAGTCTGCTGTGGATGATGATGATCAGGAGGATGCTTGCTCCTGCAGTTTCAATAATAATGATTTTTCTATTGATGATTTCCAAGATGATGGCCGGGATAATGGTGATGGAGATCAAGACATTGGTTTGATCGGTGACGGCGGAAGGCGGCGGAGCGGGGCAGCGCTTGAGTATGGTTACGAAGAAGAGGATGAAGAAGAAGAAGAAGAGTCGAGTAATGATGTGGGTGTGATTCGGAATATGAATGAAATGGAAGATAAAGTCTTTTGGGACACTTGCATGGCGGGAGGGTACCCCTGA

Protein sequence

MEWIDSADSEVDKLLSHPPHELESAVDDDDQEDACSCSFNNNDFSIDDFQDDGRDNGDGDQDIGLIGDGGRRRSGAALEYGYEEEDEEEEEESSNDVGVIRNMNEMEDKVFWDTCMAGGYP*
Homology
BLAST of Chy11G200400 vs. ExPASy TrEMBL
Match: A0A5A7SSL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001140 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.2e-46
Identity = 109/126 (86.51%), Postives = 113/126 (89.68%), Query Frame = 0

Query: 3   WIDSADSEVDKLLSHPPHELESAVDDDDQEDACSCSFNNNDFSID-----DFQDDGRDNG 62
           W DSADSEVDKLLSH PHELESAVDDDDQEDACSCS NNNDFSID     DFQDDG DNG
Sbjct: 13  WEDSADSEVDKLLSH-PHELESAVDDDDQEDACSCSCNNNDFSIDDLRALDFQDDG-DNG 72

Query: 63  DG--DQDIGLIGDGGRRRSGAALEYGYEEEDEEEEEESSNDVGVIRNMNEMEDKVFWDTC 122
           D   DQDI LIGDGGRRRSGAAL+YGYEEE+EEEEEESS+DVGVIRNMNEMEDK+FWDTC
Sbjct: 73  DRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNEMEDKLFWDTC 132

BLAST of Chy11G200400 vs. ExPASy TrEMBL
Match: A0A0A0KBF3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 109/123 (88.62%), Postives = 111/123 (90.24%), Query Frame = 0

Query: 3   WIDSADSEVDKLLSHPPHELESAVDD-DDQEDACSCSFNNNDFSIDDFQD--DGRDNGDG 62
           W DSADSEVDKLLSHPPH+LESAVDD DDQEDACSCS NNNDFSIDDFQD  DG DNGDG
Sbjct: 13  WEDSADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDG-DNGDG 72

Query: 63  DQDIGLIGDGGRRRSGAALEYGYEEEDEEEEEESS-NDVGVIRNMNEMEDKVFWDTCMAG 122
           DQDIGLIGDGGRRRSGA    GYEEE+EEEEEESS NDVG IRNMNEMEDKVFWDTCMAG
Sbjct: 73  DQDIGLIGDGGRRRSGA----GYEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCMAG 130

BLAST of Chy11G200400 vs. NCBI nr
Match: KAA0033453.1 (hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa])

HSP 1 Score: 198 bits (503), Expect = 6.54e-63
Identity = 109/126 (86.51%), Postives = 113/126 (89.68%), Query Frame = 0

Query: 3   WIDSADSEVDKLLSHPPHELESAVDDDDQEDACSCSFNNNDFSIDD-----FQDDGRDNG 62
           W DSADSEVDKLLSHP HELESAVDDDDQEDACSCS NNNDFSIDD     FQDDG DNG
Sbjct: 13  WEDSADSEVDKLLSHP-HELESAVDDDDQEDACSCSCNNNDFSIDDLRALDFQDDG-DNG 72

Query: 63  DGD--QDIGLIGDGGRRRSGAALEYGYEEEDEEEEEESSNDVGVIRNMNEMEDKVFWDTC 121
           D D  QDI LIGDGGRRRSGAAL+YGYEEE+EEEEEESS+DVGVIRNMNEMEDK+FWDTC
Sbjct: 73  DRDLDQDICLIGDGGRRRSGAALKYGYEEEEEEEEEESSDDVGVIRNMNEMEDKLFWDTC 132

BLAST of Chy11G200400 vs. NCBI nr
Match: KAE8646684.1 (hypothetical protein Csa_005604 [Cucumis sativus])

HSP 1 Score: 191 bits (486), Expect = 3.41e-60
Identity = 107/120 (89.17%), Postives = 109/120 (90.83%), Query Frame = 0

Query: 6   SADSEVDKLLSHPPHELESAVDD-DDQEDACSCSFNNNDFSIDDFQD--DGRDNGDGDQD 65
           SADSEVDKLLSHPPH+LESAVDD DDQEDACSCS NNNDFSIDDFQD  DG DNGDGDQD
Sbjct: 31  SADSEVDKLLSHPPHQLESAVDDADDQEDACSCSCNNNDFSIDDFQDAYDG-DNGDGDQD 90

Query: 66  IGLIGDGGRRRSGAALEYGYEEEDEEEEEESSN-DVGVIRNMNEMEDKVFWDTCMAGGYP 121
           IGLIGDGGRRRSGA    GYEEE+EEEEEESSN DVG IRNMNEMEDKVFWDTCMAGGYP
Sbjct: 91  IGLIGDGGRRRSGA----GYEEEEEEEEEESSNNDVGAIRNMNEMEDKVFWDTCMAGGYP 145

BLAST of Chy11G200400 vs. NCBI nr
Match: KAG6575041.1 (hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (326), Expect = 4.88e-36
Identity = 77/126 (61.11%), Postives = 89/126 (70.63%), Query Frame = 0

Query: 3   WIDSADSEVDKLLSHPPHELESAVDDDDQEDACSCSFNNNDFSIDDFQDDGRDNGDGDQD 62
           W D+ADSEVD+LLSHP H+LESAVDD +   +CSC     D S  D QDDG  +GD D+ 
Sbjct: 10  WEDTADSEVDRLLSHP-HQLESAVDDPEDARSCSCDDYATDRSAVDLQDDG--DGDEDRA 69

Query: 63  IGLIGDGGR-------RRSGAALEYGYEEEDEEEEEESSNDVGVIRNMNEMEDKVFWDTC 121
           +G  GD  R       R SGA LEY  EE DEEEEEES+N+VG IR+MNEMEDK+FWDTC
Sbjct: 70  VGSTGDDARSSHLDETRPSGATLEYSSEE-DEEEEEESNNNVGAIRDMNEMEDKLFWDTC 129

BLAST of Chy11G200400 vs. NCBI nr
Match: KAG6668211.1 (hypothetical protein CIPAW_01G154900 [Carya illinoinensis] >KAG6731953.1 hypothetical protein I3842_01G153400 [Carya illinoinensis] >KAG7996177.1 hypothetical protein I3843_01G146000 [Carya illinoinensis])

HSP 1 Score: 61.6 bits (148), Expect = 4.94e-09
Identity = 49/134 (36.57%), Postives = 65/134 (48.51%), Query Frame = 0

Query: 5   DSADSEVDKLLSHPPHELESAVDDDDQEDACSCS------FNNNDFSIDDFQDDGRDNGD 64
           DS D+E    L     E+  A DDDD +DA SCS      +N   FS  D  D    + D
Sbjct: 21  DSHDTEAVPDLKTHAAEVAIAGDDDDLQDAESCSCDCTSDYNKRGFSKVDVDDCDDQDSD 80

Query: 65  GDQDIGLIGDGG-----------RRRSGAALEYGYEEEDEEEEEESSNDVGVIRNMNEME 121
           G  + G  GD             R  S  ALE  + +E+E++       +G   NM+EME
Sbjct: 81  GGSNFGNDGDDHCEKSADSFCEIRSTSDVALECNFSKEEEKK-------IGEFNNMDEME 140

BLAST of Chy11G200400 vs. NCBI nr
Match: KAG2727271.1 (hypothetical protein I3760_01G150500 [Carya illinoinensis])

HSP 1 Score: 60.8 bits (146), Expect = 9.76e-09
Identity = 48/134 (35.82%), Postives = 65/134 (48.51%), Query Frame = 0

Query: 5   DSADSEVDKLLSHPPHELESAVDDDDQEDACSCS------FNNNDFSIDDFQDDGRDNGD 64
           DS D+E    L     E+  A DDDD +DA SCS      +N   FS  D  D    + D
Sbjct: 21  DSHDTEAVPDLKTHAAEVAIAGDDDDLQDAESCSCDCTSDYNKRGFSKVDVDDCDDQDSD 80

Query: 65  GDQDIGLIGDGGRRRSG-----------AALEYGYEEEDEEEEEESSNDVGVIRNMNEME 121
           G  + G  GD  R +S             ALE  + + +E++       +G   NM+EME
Sbjct: 81  GGSNFGNDGDDHREKSADSCCEIRSTSDVALECNFSKGEEKK-------IGEFNNMDEME 140

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SSL91.2e-4686.51Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KBF32.6e-4688.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G067420 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAA0033453.16.54e-6386.51hypothetical protein E6C27_scaffold111G001140 [Cucumis melo var. makuwa][more]
KAE8646684.13.41e-6089.17hypothetical protein Csa_005604 [Cucumis sativus][more]
KAG6575041.14.88e-3661.11hypothetical protein SDJN03_25680, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6668211.14.94e-0936.57hypothetical protein CIPAW_01G154900 [Carya illinoinensis] >KAG6731953.1 hypothe... [more]
KAG2727271.19.76e-0935.82hypothetical protein I3760_01G150500 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR35726GLUTAMIC ACID-RICH PROTEIN-LIKEcoord: 4..121
NoneNo IPR availablePANTHERPTHR35726:SF5SUBFAMILY NOT NAMEDcoord: 4..121

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G200400.1Chy11G200400.1mRNA