Chy11G199210 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G199210
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Thylakoid soluble phosphoprotein TSP
Location	chrH11: 19666173 .. 19666466 (-)
RNA-Seq Expression	Chy11G199210
Synteny	Chy11G199210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGAAGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGCCGCCTCCGGTAACGGCACCGGCTCCGTCCGCGGTGGCCGAAAGAATTCCGTCCAAGTCCCCCCGAAGAAGAACGGCGGCGGGTTTGGTGGTCTCTTTGCCAAGAAAGACTGA

mRNA sequence

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGAAGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGCCGCCTCCGGTAACGGCACCGGCTCCGTCCGCGGTGGCCGAAAGAATTCCGTCCAAGTCCCCCCGAAGAAGAACGGCGGCGGGTTTGGTGGTCTCTTTGCCAAGAAAGACTGA

Coding sequence (CDS)

ATGGCCTCTCTTCCAATCGCATTCTCTCCGGCCGCCGGAAGCGTATTCGCAGCCACCGCGGCCAAAGGCGCCGGCGAAAGCAAGAAAGAAAAGGGCCTTCTTGATTGGATCATCGGCAGCTTGAATAAGGATCAGCTTCTTGAAACCGACCCTGTTCTTCAAAAAGTCGAAGGCAAGGACGCCGCCTCCGGTAACGGCACCGGCTCCGTCCGCGGTGGCCGAAAGAATTCCGTCCAAGTCCCCCCGAAGAAGAACGGCGGCGGGTTTGGTGGTCTCTTTGCCAAGAAAGACTGA

Protein sequence

MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKDAASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD*

Homology

[Close]

BLAST of Chy11G199210 vs. ExPASy TrEMBL
Match: A0A0A0KC59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 9.6e-44
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAG VFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
          AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of Chy11G199210 vs. ExPASy TrEMBL
Match: A0A5A7V5S9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00530 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAG VFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Chy11G199210 vs. ExPASy TrEMBL
Match: A0A1S3CKK5 (uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.4e-39
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAG VFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            SGNGTG+VR GRKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVR-GRKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Chy11G199210 vs. ExPASy TrEMBL
Match: A0A6J1L2X7 (uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.4e-32
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAG VFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of Chy11G199210 vs. ExPASy TrEMBL
Match: A0A6J1G777 (uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC111451452 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.4e-32
Identity = 78/97 (80.41%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAG VFAATAAKGAGE KKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGEGKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 98
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of Chy11G199210 vs. NCBI nr
Match: XP_004143212.1 (uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical protein Csa_020752 [Cucumis sativus])

HSP 1 Score: 184 bits (468), Expect = 1.53e-58
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAG VFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97
          AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97

[Close]

BLAST of Chy11G199210 vs. NCBI nr
Match: XP_008464052.1 (PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 uncharacterized protein E6C27_scaffold89G00830 [Cucumis melo var. makuwa] >TYK15410.1 uncharacterized protein E5676_scaffold571G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 170 bits (431), Expect = 6.53e-53
Identity = 90/97 (92.78%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAG VFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97
            SGNGTG+VRG RKNSVQ+PPKKNGG FGGLFAKKD
Sbjct: 61 GTSGNGTGTVRG-RKNSVQIPPKKNGGVFGGLFAKKD 96

[Close]

BLAST of Chy11G199210 vs. NCBI nr
Match: XP_038901860.1 (uncharacterized protein LOC120088545 [Benincasa hispida])

HSP 1 Score: 169 bits (427), Expect = 2.66e-52
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAA  VFAATAAKGAGESKKE+GLLDWIIGSLNKDQLLETDPVLQKVEGK 
Sbjct: 1  MASLPIAFSPAAVRVFAATAAKGAGESKKEQGLLDWIIGSLNKDQLLETDPVLQKVEGK- 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97
          AA+GNG+G+VRGGRKNSVQVPPKKNGGGFGGLFAKKD
Sbjct: 61 AAAGNGSGTVRGGRKNSVQVPPKKNGGGFGGLFAKKD 96

[Close]

BLAST of Chy11G199210 vs. NCBI nr
Match: KAG7010512.1 (hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153 bits (386), Expect = 4.22e-46
Identity = 84/97 (86.60%), Postives = 88/97 (90.72%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASLPIAFSPAAG VFAATAAKGAGESKKEKGLLDWIIGSL +DQLLETDPVLQKVEGKD
Sbjct: 1  MASLPIAFSPAAGRVFAATAAKGAGESKKEKGLLDWIIGSLERDQLLETDPVLQKVEGKD 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97
          + SG    +V GGRKNSVQVPPKKN GGFGGLFAK+D
Sbjct: 61 SNSG----TVSGGRKNSVQVPPKKN-GGFGGLFAKRD 92

[Close]

BLAST of Chy11G199210 vs. NCBI nr
Match: XP_023532336.1 (uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 147 bits (370), Expect = 1.27e-43
Identity = 79/97 (81.44%), Postives = 86/97 (88.66%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNKDQLLETDPVLQKVEGKD 60
          MASL  AFSPAAG VFAATAAKGAGESKKEKG+LDWI+G + KDQLLETDPVLQKVEGK+
Sbjct: 1  MASLSFAFSPAAGRVFAATAAKGAGESKKEKGILDWILGGMEKDQLLETDPVLQKVEGKN 60

Query: 61 AASGNGTGSVRGGRKNSVQVPPKKNGGGFGGLFAKKD 97
            + NG G+VRGG+KNSVQVPPKKN G FGGLFAKKD
Sbjct: 61 GGANNG-GTVRGGKKNSVQVPPKKN-GVFGGLFAKKD 95

[Close]

BLAST of Chy11G199210 vs. TAIR 10
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thylakoid soluble phosphoprotein TSP9 (InterPro:IPR021584); Has 37 Blast hits to 37 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-13
Identity = 39/93 (41.94%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 1  MASLPIAFSPAAGSVFAATAAKGAGESKKEKGLLDWIIGSLNK-DQLLETDPVLQKVEGK 60
          ++SL ++F+PA   V+A +   G+G  K+EK  +D+++G + K DQ  ET+P+L+KV+ K
Sbjct: 2  VSSLLMSFAPATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVDEK 61

Query: 61 DAASGNGTGSVRGGRKNSVQVPPKKNGGGFGGL 93
          +  +  G G+VRGG+ ++    PKK+ GGFGGL
Sbjct: 62 EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGL 94

The following BLAST results are available for this feature:

BLAST of Chy11G199210 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G199210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC59	9.6e-44	98.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G187910 PE=4 SV=1	[more]
A0A5A7V5S9	2.4e-39	92.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKK5	2.4e-39	92.78	uncharacterized protein LOC103502033 OS=Cucumis melo OX=3656 GN=LOC103502033 PE=...	[more]
A0A6J1L2X7	8.4e-32	80.41	uncharacterized protein LOC111499927 OS=Cucurbita maxima OX=3661 GN=LOC111499927...	[more]
A0A6J1G777	8.4e-32	80.41	uncharacterized protein LOC111451452 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of Chy11G199210 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143212.1	1.53e-58	98.97	uncharacterized protein LOC101205268 [Cucumis sativus] >KGN47098.1 hypothetical ...	[more]
XP_008464052.1	6.53e-53	92.78	PREDICTED: uncharacterized protein LOC103502033 [Cucumis melo] >KAA0061846.1 unc...	[more]
XP_038901860.1	2.66e-52	92.78	uncharacterized protein LOC120088545 [Benincasa hispida]	[more]
KAG7010512.1	4.22e-46	86.60	hypothetical protein SDJN02_27306, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023532336.1	1.27e-43	81.44	uncharacterized protein LOC111794525 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy11G199210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47070.1	1.7e-13	41.94	LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 20..95 e-value: 1.7E-23 score: 83.1
IPR021584	Thylakoid soluble phosphoprotein TSP9	PANTHER	PTHR36370	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..97
None	No IPR available	PANTHER	PTHR36370:SF1	THYLAKOID SOLUBLE PHOSPHOPROTEIN	coord: 1..97
IPR037244	Thylakoid soluble phosphoprotein TSP9 superfamily	SUPERFAMILY	144256	TSP9-like	coord: 20..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G199210.1	Chy11G199210.1	mRNA