Chy11G198900 (gene) Cucumber (hystrix) v1

Overview
NameChy11G198900
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description40S ribosomal protein S23
LocationchrH11: 19362130 .. 19362754 (-)
RNA-Seq ExpressionChy11G198900
SyntenyChy11G198900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTACAGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATGTAAGATGATTTTATTTGTGCTGTGCTTTTCTGGGGCTTACTTTGCTAAAACCTATTTAATATGTAATTTTCTGGTGCTACGTGCAGTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAACTACATTGAAGAAAATGTAAGTATTCAAGGGAAGCTTGGGATTTGATCATGGGAGTTTTGGTTACCATTATCAAAATTGTTCTCTATTTTTTCAATAATATATGTATTGGCATGCACAGGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTGGCTCTCTTCAAGGAAAAGAAGGAGAAACCAAGATCTTAA

mRNA sequence

ATGTCTTACAGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAACTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTGGCTCTCTTCAAGGAAAAGAAGGAGAAACCAAGATCTTAA

Coding sequence (CDS)

ATGTCTTACAGGAAAACACGAGGAATGGGAGCGGGTCGCAAGTTGAAGTCCCACCGTAGAAGACAAAGGTGGGCTGACAAAGCATACAAGAAATCCCATCTTGGAAACGAGTGGAAGAAACCATTTGCTGGATCTTCCCACGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGAAAGTGTGCTAGAGTTCAGCTTATTAAGAACGGGAAGAAGATTGCTGCCTTTGTCCCAAATGATGGTTGTCTTAACTACATTGAAGAAAATGACGAGGTTCTCATTGCTGGATTTGGTCGAAAAGGACATGCTGTTGGTGATATTCCCGGAGTCAGATTTAAGGTGGTGAAGGTATCAGGTGTATCTCTGCTGGCTCTCTTCAAGGAAAAGAAGGAGAAACCAAGATCTTAA

Protein sequence

MSYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS*
Homology
[Close]
BLAST of Chy11G198900 vs. ExPASy Swiss-Prot
Match: P46297 (40S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 2.8e-73
Identity = 137/140 (97.86%), Postives = 139/140 (99.29%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 64
           KTRGMGA RKLK+HRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 65  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 124
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 125 KVSGVSLLALFKEKKEKPRS 145
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Chy11G198900 vs. ExPASy Swiss-Prot
Match: Q9M5Z9 (40S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.4e-72
Identity = 136/140 (97.14%), Postives = 137/140 (97.86%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 64
           KT GMGA RKLKSHRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTHGMGAARKLKSHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 65  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 124
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 125 KVSGVSLLALFKEKKEKPRS 145
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Chy11G198900 vs. ExPASy Swiss-Prot
Match: P49201 (40S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2)

HSP 1 Score: 267.3 bits (682), Expect = 1.0e-70
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 64
           KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 65  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 124
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 125 KVSGVSLLALFKEKKEKPRS 145
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Chy11G198900 vs. ExPASy Swiss-Prot
Match: Q9SF35 (40S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2)

HSP 1 Score: 258.5 bits (659), Expect = 4.7e-68
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 64
           KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPN 62

Query: 65  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 124
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 125 KVSGVSLLALFKEKKEKPRS 145
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Chy11G198900 vs. ExPASy Swiss-Prot
Match: Q9GRJ3 (40S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-60
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 64
           K RG+   RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQP
Sbjct: 3   KPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQP 62

Query: 65  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 124
           NSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKV
Sbjct: 63  NSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKV 122

Query: 125 VKVSGVSLLALFKEKKEKPRS 145
           VKV+ VSLLAL+K+KKE+PRS
Sbjct: 123 VKVASVSLLALYKQKKERPRS 143

[Close]
BLAST of Chy11G198900 vs. ExPASy TrEMBL
Match: A0A4Y7LHS7 (Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_046546 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 1   MSYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60
           M YRKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 1   MGYRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60

Query: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120

Query: 121 FKVVKVSGVSLLALFKEKKEKPRS 145
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 FKVVKVSGVSLLALFKEKKEKPRS 144

[Close]
BLAST of Chy11G198900 vs. ExPASy TrEMBL
Match: A0A5D3C1C1 (40S ribosomal protein S23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002160 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.2e-73
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 1   MSYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60
           MS RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 1   MSCRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60

Query: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120

Query: 121 FKVVKVSGVSLLALFKEKKEKPRS 145
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 FKVVKVSGVSLLALFKEKKEKPRS 144

[Close]
BLAST of Chy11G198900 vs. ExPASy TrEMBL
Match: A0A6P8DTI5 (40S ribosomal protein S23 isoform X1 OS=Punica granatum OX=22663 GN=LOC116206757 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.0e-73
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   SYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 61
           SYRKTRGMGAGRKLKSHRRRQRWADKAYKKS+LGNEWKKPFAGSSHAKGIVLEKIGIEAK
Sbjct: 3   SYRKTRGMGAGRKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAK 62

Query: 62  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 121
           QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF
Sbjct: 63  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 122

Query: 122 KVVKVSGVSLLALFKEKKEKPRS 145
           KVVKVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVVKVSGVSLLALFKEKKEKPRS 145

[Close]
BLAST of Chy11G198900 vs. ExPASy TrEMBL
Match: A0A7J7HM69 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_006685 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.5e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 3   YRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 62
           +RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 11  HRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 70

Query: 63  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 122
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 71  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 130

Query: 123 VVKVSGVSLLALFKEKKEKPRS 145
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 131 VVKVSGVSLLALFKEKKEKPRS 152

[Close]
BLAST of Chy11G198900 vs. ExPASy TrEMBL
Match: A0A4S4DGM1 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_010314 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 8.5e-73
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 3   YRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 62
           +RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 11  HRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 70

Query: 63  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 122
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 71  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 130

Query: 123 VVKVSGVSLLALFKEKKEKPRS 145
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 131 VVKVSGVSLLALFKEKKEKPRS 152

[Close]
BLAST of Chy11G198900 vs. NCBI nr
Match: XP_026418399.1 (40S ribosomal protein S23 isoform X1 [Papaver somniferum] >XP_026424064.1 40S ribosomal protein S23 isoform X1 [Papaver somniferum] >RZC83759.1 hypothetical protein C5167_046546 [Papaver somniferum])

HSP 1 Score: 283 bits (724), Expect = 4.40e-96
Identity = 142/144 (98.61%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 1   MSYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60
           M YRKTRGMGAGRKLKSHRRRQRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 1   MGYRKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60

Query: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120

Query: 121 FKVVKVSGVSLLALFKEKKEKPRS 144
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 FKVVKVSGVSLLALFKEKKEKPRS 144

[Close]
BLAST of Chy11G198900 vs. NCBI nr
Match: TYK05731.1 (40S ribosomal protein S23 [Cucumis melo var. makuwa])

HSP 1 Score: 282 bits (722), Expect = 8.88e-96
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0 

Query: 1   MSYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60
           MS RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA
Sbjct: 1   MSCRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEA 60

Query: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120
           KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR
Sbjct: 61  KQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVR 120

Query: 121 FKVVKVSGVSLLALFKEKKEKPRS 144
           FKVVKVSGVSLLALFKEKKEKPRS
Sbjct: 121 FKVVKVSGVSLLALFKEKKEKPRS 144

[Close]
BLAST of Chy11G198900 vs. NCBI nr
Match: XP_031395423.1 (40S ribosomal protein S23 isoform X1 [Punica granatum])

HSP 1 Score: 281 bits (719), Expect = 2.64e-95
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 

Query: 2   SYRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAK 61
           SYRKTRGMGAGRKLKSHRRRQRWADKAYKKS+LGNEWKKPFAGSSHAKGIVLEKIGIEAK
Sbjct: 3   SYRKTRGMGAGRKLKSHRRRQRWADKAYKKSNLGNEWKKPFAGSSHAKGIVLEKIGIEAK 62

Query: 62  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 121
           QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF
Sbjct: 63  QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 122

Query: 122 KVVKVSGVSLLALFKEKKEKPRS 144
           KVVKVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVVKVSGVSLLALFKEKKEKPRS 145

[Close]
BLAST of Chy11G198900 vs. NCBI nr
Match: KAF5953829.1 (hypothetical protein HYC85_006685 [Camellia sinensis] >THG01484.1 hypothetical protein TEA_010314 [Camellia sinensis var. sinensis])

HSP 1 Score: 280 bits (717), Expect = 6.76e-95
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0 

Query: 3   YRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 62
           +RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ
Sbjct: 11  HRKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQ 70

Query: 63  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 122
           PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK
Sbjct: 71  PNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFK 130

Query: 123 VVKVSGVSLLALFKEKKEKPRS 144
           VVKVSGVSLLALFKEKKEKPRS
Sbjct: 131 VVKVSGVSLLALFKEKKEKPRS 152

[Close]
BLAST of Chy11G198900 vs. NCBI nr
Match: CAA3015173.1 (40S ribosomal S23 [Olea europaea subsp. europaea])

HSP 1 Score: 280 bits (715), Expect = 1.15e-94
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0 

Query: 4   RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 63
           RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP
Sbjct: 7   RKTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQP 66

Query: 64  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 123
           NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV
Sbjct: 67  NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 126

Query: 124 VKVSGVSLLALFKEKKEKPRS 144
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 127 VKVSGVSLLALFKEKKEKPRS 147

[Close]
BLAST of Chy11G198900 vs. TAIR 10
Match: AT5G02960.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 267.3 bits (682), Expect = 7.1e-72
Identity = 135/140 (96.43%), Postives = 135/140 (96.43%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 64
           KTRGMGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 62

Query: 65  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 124
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 125 KVSGVSLLALFKEKKEKPRS 145
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Chy11G198900 vs. TAIR 10
Match: AT3G09680.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-69
Identity = 132/140 (94.29%), Postives = 133/140 (95.00%), Query Frame = 0 

Query: 5   KTRGMGAGRKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPN 64
           KTRGMGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPN
Sbjct: 3   KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWKKPFACSSHAKGIVLEKIGIEAKQPN 62

Query: 65  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 124
           SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV
Sbjct: 63  SAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVV 122

Query: 125 KVSGVSLLALFKEKKEKPRS 145
           KVSGVSLLALFKEKKEKPRS
Sbjct: 123 KVSGVSLLALFKEKKEKPRS 142

[Close]
BLAST of Chy11G198900 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 36  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 95
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 96  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 126
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Chy11G198900 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 36  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 95
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 96  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 126
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

[Close]
BLAST of Chy11G198900 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 48.9 bits (115), Expect = 4.0e-06
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 36  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNY 95
           N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + 
Sbjct: 17  NVTKSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRL-TSGFEITAYIPGIG--HN 76

Query: 96  IEENDEVLIAGFGRKGHAVGDIPGVRFKVVK 126
           ++E+  VL+     +G  V D+PGVR+ +V+
Sbjct: 77  LQEHSVVLV-----RGGRVKDLPGVRYHIVR 99

The following BLAST results are available for this feature:
BLAST of Chy11G198900 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P462972.8e-7397.8640S ribosomal protein S23 OS=Fragaria ananassa OX=3747 GN=RPS23 PE=2 SV=1[more]
Q9M5Z92.4e-7297.1440S ribosomal protein S23 OS=Euphorbia esula OX=3993 GN=RPS23 PE=2 SV=1[more]
P492011.0e-7096.4340S ribosomal protein S23-2 OS=Arabidopsis thaliana OX=3702 GN=RPS23B PE=2 SV=2[more]
Q9SF354.7e-6894.2940S ribosomal protein S23-1 OS=Arabidopsis thaliana OX=3702 GN=RPS23A PE=2 SV=2[more]
Q9GRJ31.2e-6080.8540S ribosomal protein S23 OS=Lumbricus rubellus OX=35632 GN=RPS23 PE=2 SV=1[more]
BLAST of Chy11G198900 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4Y7LHS71.3e-7398.61Uncharacterized protein OS=Papaver somniferum OX=3469 GN=C5167_046546 PE=3 SV=1[more]
A0A5D3C1C12.2e-7399.3140S ribosomal protein S23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6P8DTI55.0e-7399.3040S ribosomal protein S23 isoform X1 OS=Punica granatum OX=22663 GN=LOC116206757... [more]
A0A7J7HM698.5e-7399.30Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_006685 PE=3 SV=1[more]
A0A4S4DGM18.5e-7399.30Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0103... [more]
BLAST of Chy11G198900 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_026418399.14.40e-9698.6140S ribosomal protein S23 isoform X1 [Papaver somniferum] >XP_026424064.1 40S ri... [more]
TYK05731.18.88e-9699.3140S ribosomal protein S23 [Cucumis melo var. makuwa][more]
XP_031395423.12.64e-9599.3040S ribosomal protein S23 isoform X1 [Punica granatum][more]
KAF5953829.16.76e-9599.30hypothetical protein HYC85_006685 [Camellia sinensis] >THG01484.1 hypothetical p... [more]
CAA3015173.11.15e-94100.0040S ribosomal S23 [Olea europaea subsp. europaea][more]
BLAST of Chy11G198900 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G02960.17.1e-7296.43Ribosomal protein S12/S23 family protein [more]
AT3G09680.13.3e-6994.29Ribosomal protein S12/S23 family protein [more]
ATCG00065.14.0e-0636.26ribosomal protein S12A [more]
ATCG01230.14.0e-0636.26ribosomal protein S12B [more]
ATCG00905.14.0e-0636.26ribosomal protein S12C [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 18..144
e-value: 5.1E-33
score: 111.2
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 33..143
e-value: 7.0E-50
score: 167.4
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 4..144
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 61..68
IPR005680Ribosomal protein S23, eukaryotic/archaealTIGRFAMTIGR00982TIGR00982coord: 8..143
e-value: 6.6E-53
score: 176.1
IPR005680Ribosomal protein S23, eukaryotic/archaealCDDcd03367Ribosomal_S23coord: 28..141
e-value: 1.7869E-74
score: 215.596
NoneNo IPR availableGENE3D2.40.50.140coord: 27..144
e-value: 4.1E-47
score: 160.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availablePANTHERPTHR11652:SF59BNACNNG03140D PROTEINcoord: 4..144
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 22..142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G198900.1Chy11G198900.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome