Chy11G198610 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G198610
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	THO complex subunit 4A-like
Location	chrH11: 18999840 .. 19001406 (+)
RNA-Seq Expression	Chy11G198610
Synteny	Chy11G198610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAGCAAGAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCTGGCCCCGTCCGTAGATTCCCTAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGTTCGGTTTCGAGTTTCTCGATGTTTATGTCGATTTGTCTCGATTTAGCTCCTTGAATTCTGGATTTAGGTTTTGTTTTGAACGTTTTTGATTTGGTAAACGTTAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCCTTGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGTATTTATAACTCTTGTGGATGAGTGGAACGGGAAGAGATGTTTCCTTTCTTGTTTTCTTTTGTTGACAGTCTTCGTATTTGCAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGTATCTTACGAGGCCTGGCATAAGATACTGGTTCTTGTGCATTATCTATTTTTGGGCGAAGTTAAGAAATTCTCTGTCTATAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTTGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGTATAAACTATGTTATGTTTTTATGCCTCATCATTGAAATTAGAACACAGATTTGTTTATAATTGGATGGAATAGTTAACTACATCCGCATATTGTAACATAATATATCATGAATTGCAAGTCGTGTTTGGGATATCAGTTGATTGATATTAGCTGCTTTCAGATTCTTGAGTCTTATTATAACTGTTAAAAGTTTTCTTCCCCTTGTTTTGGTCACCTTTATTTCTGCTTATAAAGAATTTGTATTACGGCCTCTTCATTTGTTGTAGTAGTTAACTTGTGGTATATTTTAGGTGAAGTATGCTGTTGTATGTTTTCTCGGGAAAATTTGTCTCTGATGCAGACAAATATGGCATATGAATTCGTACTTGAATAACTTTTTTACAGATTTGTACAATGATACACGATAAAGATGGTTGGAGCCATTTTTTTAAATTTGTAGTGTGTCCCCTTTACTCAAATCTCTTTATATTTTGAGCTCAGTTTATTTGGCTTTGTTTTTACATTGTTTTATATAATCAGTGGTACCGTCCTCTGAGCCATCCATATCATAGTGACATTCATTTTATAACGGAACAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCTCGAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

mRNA sequence

ATGGCTGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAGCAAGAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCTGGCCCCGTCCGTAGATTCCCTAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCCTTGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTTGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCTCGAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Coding sequence (CDS)

ATGGCTGCTCCTTTGGATATGAGTCTTGACGATATCATAAAGAACAGCAAGAAATCCAGATCCGGAAATTCTAGAGGTCGCGGAAGAGGTTCTGGACCTGGCCCCGTCCGTAGATTCCCTAATCGCGCCGCTAACCGCACACCTTATTCCGCTCCCAAGGCGCCGGAGACGACGTGGCAACATGATATGTTCGCCGATCCGAGTTCTGGATTCCTTGTGCAAGGTGGGCGAGCTTCTGCTATTCAGACTGGGACTAAGCTTTATATATCTAATTTGGATTACGGTGTTTCTAACGAAGATATTAAGGAACTTTTTTCTGAAGTTGGTGATATGAAACGCCACGGAATCCATTATGACAAAAGTGGGAGATCCAAGGGAACGGCGGAAGTAGTTTTCTCACGACGACTTGATGCTGTTGCGGCTGTAAAGAAGTACAACAACGTTCAGCTTGATGGAAAACCAATGAAGATAGAGATCGTTGGAACTAATATTTCCACGCCTGCTGTTGGTCCTACCGCTGCTGTGAACCCTTTCGAAAATTCAAATGGGGCTCCGAGAAGGCAGCAAGGTAGGGGTGGTCCACCATCACGTCAACGTGGTCGTGGTTTTGGAAGAGGGCGTGGGCGGGGAAGAGGCTCGAGTGAAAAGGTTTCTGCTGAAGATCTTGATGCTGACTTGGAAAAGTATCATGCTGAGTCTATGCAGATAAATTAG

Protein sequence

MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN*

Homology

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BLAST of Chy11G198610 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 7.6e-68
Identity = 156/251 (62.15%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  ++KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGSSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+G +EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

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BLAST of Chy11G198610 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.9e-61
Identity = 158/290 (54.48%), Postives = 181/290 (62.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+++K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFLVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNG-------APRRQQGRGGPPSRQR 236
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

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BLAST of Chy11G198610 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.2e-42
Identity = 124/293 (42.32%), Postives = 161/293 (54.95%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGN---SRGRGR-----GSGPGPVRRFPNRAANRTPYS-- 60
           M+  L+M+LD+I+K  K +RSG    SRGRGR     G G GP RR P  A N  P S  
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGP-LAVNARPSSFT 60

Query: 61  ----APKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFS 120
                 +     WQ  +F D      ++   AS ++ GT+L+++NLD GV+NEDI+ELFS
Sbjct: 61  INKPVRRVRSLPWQSGLFEDG-----LRAAGASGVEVGTRLHVTNLDQGVTNEDIRELFS 120

Query: 121 EVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNIST 180
           E+G+++R+ IHYDK+GR  GTAEVV+ RR DA  A+KKYNNV LDG+PM++EI+G N S+
Sbjct: 121 EIGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSS 180

Query: 181 PAV---------------------------------------GPTAAVN---PFENSNGA 235
            A                                        GP   V+   P  N  G 
Sbjct: 181 EAPLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGG 240

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BLAST of Chy11G198610 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 168.7 bits (426), Expect = 8.0e-41
Identity = 112/258 (43.41%), Postives = 147/258 (56.98%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK ++  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  RA-------ANR-TPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNLD 120
            A        NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGK 180
           +GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGS 232
           PM I++V + I T    P  ++N    +        G GG     RG   GRGRG GR S
Sbjct: 181 PMNIQLVTSQIDTQR-RPAQSINRGGMTRNRGSGGFGGGGTRRGTRGGSRGRGRGTGRNS 240

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BLAST of Chy11G198610 vs. ExPASy Swiss-Prot
Match: Q3T0I4 (THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.4e-40
Identity = 115/265 (43.40%), Postives = 149/265 (56.23%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRG-------------------SGPGPVRRFPN 60
           MA  +DMSLDDIIK ++  R G   GRGRG                    G GP+R  P 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGGAQAAARVNRGGGPIRNRPA 60

Query: 61  RA--------ANR-TPYSAPKAPETTWQHDMFADPSSGFLVQGGRASAIQTGTKLYISNL 120
            A         NR  PYS PK     WQHD+F    SGF    G  + ++TG KL +SNL
Sbjct: 61  IARGAAGGGGRNRPAPYSRPKQLPDKWQHDLF---DSGF----GGGAGVETGGKLLVSNL 120

Query: 121 DYGVSNEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDG 180
           D+GVS+ DI+ELF+E G +K+  +HYD+SGRS GTA+V F R+ DA+ A+K+YN V LDG
Sbjct: 121 DFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 180

Query: 181 KPMKIEIVGTNISTPAVGPTAAVNPFENSNGAPRRQQGR------GGPPSRQRGRGFGRG 232
           +PM I++V + I T    P  +VN      G   R +G       GG     RG   GRG
Sbjct: 181 RPMNIQLVTSQIDTQR-RPAQSVN-----RGGMTRNRGSGGFGGGGGTRRGTRGGSRGRG 240

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BLAST of Chy11G198610 vs. ExPASy TrEMBL
Match: A0A0A0KBU2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 3.2e-125
Identity = 234/237 (98.73%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGGPPSRQRG GFGRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Chy11G198610 vs. ExPASy TrEMBL
Match: A0A1S3BK70 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.5e-124
Identity = 232/237 (97.89%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 238
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Chy11G198610 vs. ExPASy TrEMBL
Match: A0A5A7V158 (THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00510 PE=4 SV=1)

HSP 1 Score: 413.7 bits (1062), Expect = 5.2e-112
Identity = 211/217 (97.24%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKV 218
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRG SEK+
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKL 217

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BLAST of Chy11G198610 vs. ExPASy TrEMBL
Match: A0A6J1G721 (THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.2e-111
Identity = 217/238 (91.18%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 238
            NGAPRRQQGRGG PSRQR GRG GRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of Chy11G198610 vs. ExPASy TrEMBL
Match: A0A6J1L1M6 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.4e-111
Identity = 216/238 (90.76%), Postives = 221/238 (92.86%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQR-GRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 238
            NG PRRQQGRGG PSRQR GRG GRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGVPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

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BLAST of Chy11G198610 vs. NCBI nr
Match: XP_004143092.1 (THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_020836 [Cucumis sativus])

HSP 1 Score: 457 bits (1176), Expect = 6.26e-162
Identity = 234/237 (98.73%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 237
           SNGAPRRQQGRGGPPSRQRG GFGRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGHGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Chy11G198610 vs. NCBI nr
Match: XP_008448384.1 (PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448387.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_016900540.1 PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo])

HSP 1 Score: 454 bits (1167), Expect = 1.48e-160
Identity = 232/237 (97.89%), Postives = 235/237 (99.16%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 237
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Chy11G198610 vs. NCBI nr
Match: XP_038901991.1 (THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 448 bits (1153), Expect = 2.01e-158
Identity = 230/237 (97.05%), Postives = 232/237 (97.89%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADP SGF  QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFADPGSGFAGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 237
            NGAPRRQQGRGGPPSRQRGRGFGRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 LNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 237

[Close]

BLAST of Chy11G198610 vs. NCBI nr
Match: XP_022947495.1 (THO complex subunit 4A-like [Cucurbita moschata])

HSP 1 Score: 412 bits (1059), Expect = 4.42e-144
Identity = 217/238 (91.18%), Postives = 222/238 (93.28%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSG SRGRGRGSGPGPVRR PNRAANRTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGISRGRGRGSGPGPVRRIPNRAANRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMF D  +GF VQ GRAS+IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKR+GIHYDK
Sbjct: 61  HDMFVDQGAGFPVQAGRASSIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRYGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRR DA AAVKKYNNVQLDGKPMKIEIVGTNI+T AVGP AAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRGDAAAAVKKYNNVQLDGKPMKIEIVGTNIATHAVGPPAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRG-RGFGRGRGRGRGSSEKVSAEDLDADLEKYHAESMQIN 237
            NGAPRRQQGRGG PSRQRG RG GRGRGRGRG SEKVSAEDLDADLEKYHAESMQIN
Sbjct: 181 FNGAPRRQQGRGGLPSRQRGGRGSGRGRGRGRGPSEKVSAEDLDADLEKYHAESMQIN 238

[Close]

BLAST of Chy11G198610 vs. NCBI nr
Match: KAA0061942.1 (THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa] >TYK23987.1 THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 413 bits (1061), Expect = 5.37e-144
Identity = 211/217 (97.24%), Postives = 215/217 (99.08%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRGRGRGSGPGPVRRFPNRAANRTPYSAPKAPETTWQ 60
           MAAPLDMSLDDIIKN+KKSRSGNSRGRGRGSGPGPVRRFPNRAA+RTPYSAPKAPETTWQ
Sbjct: 1   MAAPLDMSLDDIIKNNKKSRSGNSRGRGRGSGPGPVRRFPNRAASRTPYSAPKAPETTWQ 60

Query: 61  HDMFADPSSGFLVQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120
           HDMFADPSSGF+ QGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK
Sbjct: 61  HDMFADPSSGFIGQGGRASAIQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHGIHYDK 120

Query: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180
           SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN
Sbjct: 121 SGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAVNPFEN 180

Query: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGSSEKV 217
           SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRG SEK+
Sbjct: 181 SNGAPRRQQGRGGPPSRQRGRGFGRGRGRGRGPSEKL 217

[Close]

BLAST of Chy11G198610 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.5 bits (659), Expect = 5.4e-69
Identity = 156/251 (62.15%), Postives = 188/251 (74.90%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  ++KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGSSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+G +EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of Chy11G198610 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 258.1 bits (658), Expect = 7.1e-69
Identity = 156/252 (61.90%), Postives = 188/252 (74.60%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  ++KSR  +G +RG G GSGPGP RR  PNR + R+ PY + KAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP--RRQQGRGGPPSRQRG--------RGFGRGRGRGRGSSEKVSAEDLDAD 238
           N   NSNGAP  R  QGRGG   +QRG         G GRGR  G+G +EK+SAEDLDAD
Sbjct: 181 N--GNSNGAPWSRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDAD 240

[Close]

BLAST of Chy11G198610 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 252.3 bits (643), Expect = 3.9e-67
Identity = 155/251 (61.75%), Postives = 187/251 (74.50%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSR--SGNSRGRGRGSGPGPVRR-FPNRAANRT-PYSAPKAPE 60
           M+  LDMSLDD+I  ++KSR  +G +RG G GSGPGP RR  PNR + R+ PY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TTWQHDMFADPSSGFLVQGGRASA-IQTGTKLYISNLDYGVSNEDIKELFSEVGDMKRHG 120
           +TW HDMF+D S     + GR+SA I+TGTKLYISNLDYGV NEDIKELF+EVG++KR+ 
Sbjct: 61  STWGHDMFSDRSEDH--RSGRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 IHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKIEIVGTNISTPAVGPTAAV 180
           +H+D+SGRSKGTAEVV+SRR DA+AAVKKYN+VQLDGKPMKIEIVGTN+ T A       
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAPSGRPA 180

Query: 181 NPFENSNGAP-RRQQGRGGPPSRQRG--------RGFGRGRGRGRGSSEKVSAEDLDADL 238
           N   NSNGAP R  QGRGG   +QRG         G GRGR  G+G +EK+SAEDLDADL
Sbjct: 181 N--GNSNGAPWRGGQGRGG---QQRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADL 240

[Close]

BLAST of Chy11G198610 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 235.3 bits (599), Expect = 4.9e-62
Identity = 158/290 (54.48%), Postives = 181/290 (62.41%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+++K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFLVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNG-------APRRQQGRGGPPSRQR 236
           EIVGTN+S PA+   A    PF          EN NG          R +GRGG   R R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

[Close]

BLAST of Chy11G198610 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-61
Identity = 157/288 (54.51%), Postives = 180/288 (62.50%), Query Frame = 0


Query: 1   MAAPLDMSLDDIIKNSKKSRSGNSRG-----------RGRGSGPGPVRRFPNRAANRT-P 60
           M+  LDMSLDDIIK+++K      RG            G GS  GP RRF NR   RT P
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YSAP----KAPETTWQHDMFADPSSGFLVQG-------GRASAIQTGTKLYISNLDYGVS 120
           YS P    +A +  WQ+D+FA  +S     G       G  S+I+TGTKLYISNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDMKRHGIHYDKSGRSKGTAEVVFSRRLDAVAAVKKYNNVQLDGKPMKI 180
           NEDIKELFSEVGD+KR+GIHYD+SGRSKGTAEVVFSRR DA+AAVK+YNNVQLDGK MKI
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGTNISTPAVGPTAAVN-PF----------ENSNGAPRRQ-----QGRGGPPSRQRGR 236
           EIVGTN+S PA+   A    PF          EN NG          +GRGG   R RG 
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

The following BLAST results are available for this feature:

BLAST of Chy11G198610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	7.6e-68	62.15	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	6.9e-61	54.48	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
Q6NQ72	3.2e-42	42.32	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
O08583	8.0e-41	43.41	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]
Q3T0I4	1.4e-40	43.40	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1	[more]

BLAST of Chy11G198610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBU2	3.2e-125	98.73	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G193610 PE=4 SV...	[more]
A0A1S3BK70	3.5e-124	97.89	THO complex subunit 4A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490589 P...	[more]
A0A5A7V158	5.2e-112	97.24	THO complex subunit 4A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A6J1G721	1.2e-111	91.18	THO complex subunit 4A-like OS=Cucurbita moschata OX=3662 GN=LOC111451345 PE=4 S...	[more]
A0A6J1L1M6	3.4e-111	90.76	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111499593 PE=4 SV=...	[more]

BLAST of Chy11G198610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143092.1	6.26e-162	98.73	THO complex subunit 4A [Cucumis sativus] >KGN47175.1 hypothetical protein Csa_02...	[more]
XP_008448384.1	1.48e-160	97.89	PREDICTED: THO complex subunit 4A-like isoform X1 [Cucumis melo] >XP_008448386.1...	[more]
XP_038901991.1	2.01e-158	97.05	THO complex subunit 4A-like [Benincasa hispida]	[more]
XP_022947495.1	4.42e-144	91.18	THO complex subunit 4A-like [Cucurbita moschata]	[more]
KAA0061942.1	5.37e-144	97.24	THO complex subunit 4A-like isoform X1 [Cucumis melo var. makuwa] >TYK23987.1 TH...	[more]

BLAST of Chy11G198610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	5.4e-69	62.15	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	7.1e-69	61.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	3.9e-67	61.75	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	4.9e-62	54.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	1.4e-61	54.51	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 165..237 e-value: 2.4E-11 score: 53.7
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 175..232 e-value: 2.8E-10 score: 40.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 86..158 e-value: 9.3E-17 score: 71.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 87..155 e-value: 2.7E-14 score: 52.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 85..162 score: 15.698528
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 74..220 e-value: 1.9E-25 score: 91.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..237
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..236
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..236
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 85..159 e-value: 2.46826E-47 score: 149.327
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 21..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G198610.1	Chy11G198610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding