Chy11G198110 (gene) Cucumber (hystrix) v1

Overview
NameChy11G198110
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH11: 18444322 .. 18446385 (-)
RNA-Seq ExpressionChy11G198110
SyntenyChy11G198110
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACAGTCTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAGCCTGTTTGTAAGAAATTGAAGAGGTCATTTCACTGCTGCTTAAAGTTCCACAAACCCAGGCTTCGCACCTCACGTAACCATCAAATTTCATTGAGGAAGCTAATGGTTTAGTTCTTGAAAGGAATATCTATGTTTTTTTCGAGTTCTCACCTGGGTTTAAGCAGTAGGGCTTCCTGTGAATATCAATTACCGGAAATGTAGCTGATGTGAAGCAGCAGGAAGAATTGCGAGAAAAAAACTGAGTTCTTGTTTGGTCCATCCTAAAAGAATGGAGAAGCGTACACTTGTTTGGTTGCCTAGACGCCGATACAAATCCTTTTGCGTTGAAGGTTACGTATAGGTTCGGAATGTCCAAACAAAAAGACAACAAACCCCAAAAGTAAACGAATTACAGACAAATTTCAGTTGGGTCAAACCCAAAACCATTGAGTTTTGAACCAATTTTAGTTTCGACGACTTTGCGAGGAAATTGGAAGTACTCAGGTCAGTCTAGTAAGTCAATGTTTCTATACCTAATATTCAAGTGGGGCTGGGAAGAAGAAGAATAATAGATGTTTTCCTGTTTTCTTTTTCCCTCATTTGATTATGATTTCTAGGGAAAAAAAAAGGGACAGCCTAGTATTTACTTGGTTGCGTATGAACAAATTTGTTTCTTCTAACCGCTGATTATTAGATTATTTAGAAATCCAATTATTTCTACTGATTATTTGATTGATATTCAAAGGATAAAACCTTCCTATTCTATGAATCCTATTAAATTTCTATATTCAACTGCTTGAGAGAACAGGAACCATGACCTTCGGGTGGAATTGGTCATATCTTCGTGTAATCTAACAGTCTTTGGAATTTCAATAATTTTGCCAACAACCCTTTAATCTTTTTCTGTAAATTATTGAACCGGTCAACTAACCCATCTGTTCATCTTATGAAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAATCGAAGAGACTTGTGCTGAGACCAAGGGGACTAGGATTCTCCAATTTTGTGTGCTGTGGGTCTCCACGGTTAGATTTCATTACTTGCCCTGTGTTCTTAAATGATATTATCGTCTTGATTCTTTGATATTTTTCAAGTTTCTGCTGTATCTTTATGAACAAATGTCAAAATGTTTTGGTAATAAAAAAGAATAAAGCAATAATAATTCTTTTTGGTCATAGTCAAATCAAATTCTGTATCATATTTCAACTTTTACTTTTCTCCTACTCCTATCTATCTATCTACCCTTTGGGTTCATTTTACATACGTATAACATGGAGTAAACCGTGTCATTTTCATTAAGGCAAAACCTGTAAATTTCTTATTATCTCTAATATTTAAACGAAACTTGTCTTCTATTTCATCTCCAGGAGCCGCCTCCTTCTGAACCTGCCATGTCCTGTGAAAATTCGTTAGCTTCTGAAAGAAAGCCCCACCTTTGTTCTTTTCTTCTTCCTACTGCTATTTAAGGTTATATAACTGTTCCCTTTTGTTTTTCTTTTCCTTTTTGTTCTTAATTCTGTAATAAATATCAAGGGTGCTTTAACTCATATCAGCTGCCTCAATTTACTGTCTTGTGAGAGTTTCTTTTGGGGGAGCTTGCTTTAACTTTTTTTTTTCTTTTGGAAAAAAAATTTTCAACTGGAAATTCTGTTTATGTTTCTTTAACTATTTTGTTGAAGAGTTGTATTTTCTTTAATGTTCGGGTTGTCAAGATTCAACTTTCTGACAGTTTTTTTTTTCTTTTGAAGAATATCGCTGTTGAAATATAGACCCTTGTCTTCGTCAACTCAACATCTACATAATTCTTCAGTTTGTACCTCCCTCAACCGTGATTGTTCGAGTGTTGGAGTGGCCCTAATACTTTTCATGCCTGCTTTCCATATTTGTAATTTGCGCAAAGAACTTCTGGATGCTGTTTAA

mRNA sequence

ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACAGTCTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAGCCTGTTTGTAAGAAATTGAAGAGTTTCGACGACTTTGCGAGGAAATTGGAAGTACTCAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAATCGAAGAGACTTGTGCTGAGACCAAGGGGACTAGGATTCTCCAATTTTGTGTGCTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCATGTCCTGTGAAAATTCAATATCGCTGTTGAAATATAGACCCTTGTCTTCGTCAACTCAACATCTACATAATTCTTCAGTTTGTACCTCCCTCAACCGTGATTGTTCGAGTGTTGGAGTGGCCCTAATACTTTTCATGCCTGCTTTCCATATTTGTAATTTGCGCAAAGAACTTCTGGATGCTGTTTAA

Coding sequence (CDS)

ATGTTAAGGCTCACGATCCATGGCCGATTGGAAAATTGGCACAGTCTTCGTCAAACTTGCGGTTGTGAGCAACTGCTGAATTTTCCGGCCATGGAAAATTGCTTGGTTGGAAGTCATGGCATGGCTGTTCAGCCTGTTTGTAAGAAATTGAAGAGTTTCGACGACTTTGCGAGGAAATTGGAAGTACTCAGACCGTTCCCTGAGGTCGAGGATATGGAATTTGGACCAATCGAAGAGACTTGTGCTGAGACCAAGGGGACTAGGATTCTCCAATTTTGTGTGCTGTGGGTCTCCACGGAGCCGCCTCCTTCTGAACCTGCCATGTCCTGTGAAAATTCAATATCGCTGTTGAAATATAGACCCTTGTCTTCGTCAACTCAACATCTACATAATTCTTCAGTTTGTACCTCCCTCAACCGTGATTGTTCGAGTGTTGGAGTGGCCCTAATACTTTTCATGCCTGCTTTCCATATTTGTAATTTGCGCAAAGAACTTCTGGATGCTGTTTAA

Protein sequence

MLRLTIHGRLENWHSLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKLEVLRPFPEVEDMEFGPIEETCAETKGTRILQFCVLWVSTEPPPSEPAMSCENSISLLKYRPLSSSTQHLHNSSVCTSLNRDCSSVGVALILFMPAFHICNLRKELLDAV*
Homology
[Close]
BLAST of Chy11G198110 vs. ExPASy TrEMBL
Match: A0A0A0KCA1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 79/111 (71.17%), Postives = 84/111 (75.68%), Query Frame = 0 

Query: 1   MLRLTIHGRLENWHSLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL 60
           MLRLTIHGRLENWH LRQTCGCEQLLNFPAMENCLVGSHGMAVQPV       + +A K+
Sbjct: 22  MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPV---YADANPYALKV 81

Query: 61  ------------EVLRPFPEVEDMEFGPIEETCAETKGTRILQFCVLWVST 100
                       +  +PFPEVEDMEFGP EETCA TKGTRILQF VLWVST
Sbjct: 82  TYRFGMSKQKDNKPQKPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 129

[Close]
BLAST of Chy11G198110 vs. ExPASy TrEMBL
Match: A0A0A0KZ13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.8e-04
Identity = 28/51 (54.90%), Postives = 32/51 (62.75%), Query Frame = 0 

Query: 50  LKSFDDFARKLEVLRPFPEVEDMEFGPIEETCAETKGTRILQFCVLWVSTE 101
           + SFDDF R LEVLR   E+E MEFGP  E  + T  TRI Q  VLW S +
Sbjct: 38  ISSFDDFPRNLEVLRLCSEIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMD 88

[Close]
BLAST of Chy11G198110 vs. NCBI nr
Match: KGN47177.2 (hypothetical protein Csa_020828 [Cucumis sativus])

HSP 1 Score: 200 bits (509), Expect = 4.65e-56
Identity = 95/99 (95.96%), Postives = 95/99 (95.96%), Query Frame = 0 

Query: 1  MLRLTIHGRLENWHSLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL 60
          MLRLTIHGRLENWH LRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL
Sbjct: 1  MLRLTIHGRLENWHCLRQTCGCEQLLNFPAMENCLVGSHGMAVQPVCKKLKSFDDFARKL 60

Query: 61 EVLRPFPEVEDMEFGPIEETCAETKGTRILQFCVLWVST 99
          EVLRPFPEVEDMEFGP EETCA TKGTRILQF VLWVST
Sbjct: 61 EVLRPFPEVEDMEFGPGEETCAGTKGTRILQFWVLWVST 99

[Close]
BLAST of Chy11G198110 vs. NCBI nr
Match: KAE8649779.1 (hypothetical protein Csa_012265 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 8.24e-14
Identity = 37/62 (59.68%), Postives = 43/62 (69.35%), Query Frame = 0 

Query: 50  LKSFDDFARKLEVLRPFPEVEDMEFGPIEETCAETKGTRILQFCVLWVSTEPPPSEPAMS 109
           + SFDDF R LEVLR   E+E MEFGP  E  + T  TRI Q  VLW S EPPPS+PA++
Sbjct: 38  ISSFDDFPRNLEVLRLCSEIEVMEFGPGHEIRSRTNWTRIHQSWVLWDSMEPPPSQPAIT 97

Query: 110 CE 111
           CE
Sbjct: 98  CE 99

[Close]
BLAST of Chy11G198110 vs. NCBI nr
Match: KAG7010553.1 (hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 68.6 bits (166), Expect = 6.37e-12
Identity = 32/52 (61.54%), Postives = 41/52 (78.85%), Query Frame = 0 

Query: 63  LRPFPEVEDMEFGPIEETCAETKGTRILQFCVLWVSTEPPPSEPAMSCENSI 114
           ++ +PEVE MEFGP +ET + TK TRI    VLWVSTEPPPSEP+++CE S+
Sbjct: 1   MKTYPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETSL 52

[Close]
BLAST of Chy11G198110 vs. NCBI nr
Match: KAG6570707.1 (Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 3.33e-09
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0 

Query: 66  FPEVEDMEFGPIEETCAETKGTRILQFCVLWVSTEPPPSEPAMSCENS 113
           +PEVE MEFGP +ET + TK TRI    VLWVSTEPPPSEP+++CE S
Sbjct: 30  YPEVEVMEFGPGKETRSGTKWTRIHLSWVLWVSTEPPPSEPSIACETS 77

[Close]
BLAST of Chy11G198110 vs. NCBI nr
Match: XP_031743531.1 (uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.1 uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 8.01e-05
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0 

Query: 72 MEFGPIEETCAETKGTRILQFCVLWVST 99
          MEFGP EETCA TKGTRILQF VLWVST
Sbjct: 1  MEFGPGEETCAGTKGTRILQFWVLWVST 28

The following BLAST results are available for this feature:
BLAST of Chy11G198110 vs.
Match NameE-valueIdentityDescription
BLAST of Chy11G198110 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCA11.1e-3471.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G190440 PE=4 SV=1[more]
A0A0A0KZ139.8e-0454.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G598020 PE=4 SV=1[more]
BLAST of Chy11G198110 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47177.24.65e-5695.96hypothetical protein Csa_020828 [Cucumis sativus][more]
KAE8649779.18.24e-1459.68hypothetical protein Csa_012265 [Cucumis sativus][more]
KAG7010553.16.37e-1261.54hypothetical protein SDJN02_27347 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6570707.13.33e-0966.67Protein TRM32, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_031743531.18.01e-0589.29uncharacterized protein LOC105435809 isoform X1 [Cucumis sativus] >XP_031743532.... [more]
BLAST of Chy11G198110 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G198110.1Chy11G198110.1mRNA