Chy11G197100 (gene) Cucumber (hystrix) v1

Overview
NameChy11G197100
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionSerine/arginine repetitive matrix protein 1-like
LocationchrH11: 16993117 .. 16993267 (-)
RNA-Seq ExpressionChy11G197100
SyntenyChy11G197100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTGTTCAAGCCCGGATGTCAACAGTAAAGCTGATAAGTTCATTGCAAGATTCAGAGCCGATTTGAAGTTGCAGAAGATGAACTCCATGAAAGAGAAGACAGCGAGGAAGAGATCTAACCTAGGCCGTACATCACGCCCAGGCCCAA

mRNA sequence

ATGCTTTGTTCAAGCCCGGATGTCAACAGTAAAGCTGATAAGTTCATTGCAAGATTCAGAGCCGATTTGAAGTTGCAGAAGATGAACTCCATGAAAGAGAAGACAGCGAGGAAGAGATCTAACCTAGGCCGTACATCACGCCCAGGCCCAA

Coding sequence (CDS)

ATGCTTTGTTCAAGCCCGGATGTCAACAGTAAAGCTGATAAGTTCATTGCAAGATTCAGAGCCGATTTGAAGTTGCAGAAGATGAACTCCATGAAAGAGAAGACAGCGAGGAAGAGATCTAACCTAGGCCGTACATCACGCCCAGGCCCAA

Protein sequence

MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGPX
Homology
BLAST of Chy11G197100 vs. ExPASy TrEMBL
Match: A0A5A7V0Q3 (Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001070 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 51
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKT RKRSNLGRTS PGP
Sbjct: 513 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTTRKRSNLGRTSGPGP 562

BLAST of Chy11G197100 vs. ExPASy TrEMBL
Match: A0A1S3CII2 (LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500804 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 51
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKT RKRSNLGRTS PGP
Sbjct: 513 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTTRKRSNLGRTSGPGP 562

BLAST of Chy11G197100 vs. ExPASy TrEMBL
Match: A0A6J1GQY1 (protein enabled homolog OS=Cucurbita moschata OX=3662 GN=LOC111456249 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 51
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKTARKRSNLGRT  PGP
Sbjct: 509 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTARKRSNLGRTPGPGP 558

BLAST of Chy11G197100 vs. ExPASy TrEMBL
Match: A0A0A0K9L4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450660 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-15
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 51
           M CSSPDVNSKAD FIARFRADLKLQKMNS+KEKTARKRSNLGRTS PGP
Sbjct: 515 MFCSSPDVNSKADTFIARFRADLKLQKMNSIKEKTARKRSNLGRTSGPGP 564

BLAST of Chy11G197100 vs. ExPASy TrEMBL
Match: A0A6J1JVT7 (serine/arginine repetitive matrix protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488332 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 45/50 (90.00%), Postives = 46/50 (92.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 51
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKTARKRSNLGRT   GP
Sbjct: 509 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTARKRSNLGRTPGSGP 558

BLAST of Chy11G197100 vs. NCBI nr
Match: XP_038896222.1 (serine/arginine repetitive matrix protein 1-like [Benincasa hispida])

HSP 1 Score: 90.5 bits (223), Expect = 1.80e-19
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 50
           + CSSPDVNSKADKFIARFRADLKLQKMNS+KEKTARKRSNLGRTS PGP
Sbjct: 505 IFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTARKRSNLGRTSGPGP 554

BLAST of Chy11G197100 vs. NCBI nr
Match: XP_008462455.2 (PREDICTED: LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 1.81e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 50
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKT RKRSNLGRTS PGP
Sbjct: 513 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTTRKRSNLGRTSGPGP 562

BLAST of Chy11G197100 vs. NCBI nr
Match: KAA0059415.1 (serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa] >TYK03911.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.81e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 50
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKT RKRSNLGRTS PGP
Sbjct: 513 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTTRKRSNLGRTSGPGP 562

BLAST of Chy11G197100 vs. NCBI nr
Match: XP_022953834.1 (protein enabled homolog [Cucurbita moschata])

HSP 1 Score: 90.1 bits (222), Expect = 2.47e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 50
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKTARKRSNLGRT  PGP
Sbjct: 509 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTARKRSNLGRTPGPGP 558

BLAST of Chy11G197100 vs. NCBI nr
Match: KAG6575459.1 (hypothetical protein SDJN03_26098, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014003.1 hypothetical protein SDJN02_24173, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.1 bits (222), Expect = 2.47e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLGRTSRPGP 50
           M CSSPDVNSKADKFIARFRADLKLQKMNS+KEKTARKRSNLGRT  PGP
Sbjct: 509 MFCSSPDVNSKADKFIARFRADLKLQKMNSIKEKTARKRSNLGRTPGPGP 558

BLAST of Chy11G197100 vs. TAIR 10
Match: AT1G72790.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-08
Identity = 30/43 (69.77%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1   MLCSSPDVNSKADKFIARFRADLKLQKMNSMKEKTARKRSNLG 44
           M C SPDV++KAD FIARFRA LKL+KMNS+K    R RSNLG
Sbjct: 503 MFCPSPDVDTKADDFIARFRAGLKLEKMNSVK----RGRSNLG 541

BLAST of Chy11G197100 vs. TAIR 10
Match: AT5G57070.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 40.0 bits (92), Expect = 6.5e-04
Identity = 18/32 (56.25%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 3   CSSPDVNSKADKFIARFRADLKLQKMNSMKEK 35
           C SPDV++KAD FIAR R + +L K+NS+  K
Sbjct: 543 CPSPDVDTKADNFIARLRDEWRLDKINSVNRK 574

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V0Q31.3e-1592.00Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3CII21.3e-1592.00LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like OS=Cucumis... [more]
A0A6J1GQY11.7e-1592.00protein enabled homolog OS=Cucurbita moschata OX=3662 GN=LOC111456249 PE=4 SV=1[more]
A0A0A0K9L42.2e-1592.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450660 PE=4 SV=1[more]
A0A6J1JVT71.4e-1490.00serine/arginine repetitive matrix protein 1-like OS=Cucurbita maxima OX=3661 GN=... [more]
Match NameE-valueIdentityDescription
XP_038896222.11.80e-1992.00serine/arginine repetitive matrix protein 1-like [Benincasa hispida][more]
XP_008462455.21.81e-1992.00PREDICTED: LOW QUALITY PROTEIN: serine/arginine repetitive matrix protein 1-like... [more]
KAA0059415.11.81e-1992.00serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa] >TYK... [more]
XP_022953834.12.47e-1992.00protein enabled homolog [Cucurbita moschata][more]
KAG6575459.12.47e-1992.00hypothetical protein SDJN03_26098, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
AT1G72790.12.0e-0869.77hydroxyproline-rich glycoprotein family protein [more]
AT5G57070.16.5e-0456.25hydroxyproline-rich glycoprotein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 6..33
e-value: 3.1E-12
score: 45.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..50
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 2..44
NoneNo IPR availablePANTHERPTHR33098:SF36OS01G0584100 PROTEINcoord: 2..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G197100.1Chy11G197100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane