Chy11G196120 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G196120
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Polyubiquitin
Location	chrH11: 14741608 .. 14743786 (+)
RNA-Seq Expression	Chy11G196120
Synteny	Chy11G196120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGTCTCTTTTTTCTGATTCCCTTCCATTTCTTACCTTTTCAATCAATTCACTACCTTTCTTTGCCCCTTCTTTATGTTTATACCTTTTGATTTATGTTTACTTTCATTTCTTTGAGATCCTTCGCCGTTCAGATGTTATTGCCTTTTGCTGCTTCGATTTCTGCTGTTTTTGTTCGTCCCTGAGGTTTTTTTTTTTTTTTTTTTGATCAAATTCTGACAAGCATGCGTTTGCTTTGATTCCGTATCATTGCATGATCCAATGGATGAAGGATTAAGAAATTAGCGTTACTGATTCATTTGCGTTTAGCACATGTGTTAAATTGAATTGTTGGAATAGGTTTTTCTTTTTTAAATTATTTTTAATATGTTTGCGGTCTCTAAGTTTATGCTTGTTCTTATCGTCTGGTTGTTTGTTAGTTCATCATATTTTCAATGGCTGGATTCCTTTTTATCAGGTGTATGTTTATATTCTTGTCACATCACTTTACGAACAAAATTATTTTGGATGCATGAATTGGTTTGGGAATTTAATTCCAGCGTGCCGTCTTTATAATCGTATTTTGAGTTTTGGAATGTATATTTCTTCTAGCTTTAAACAGGGGGGATTAGACAATTTGGTTTTAATGCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATCGAGCCAACTGACACAATTGATCGCATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGTTTGCATTTGCCTCCTTCTTTAATTACTTAAACTACAATAACTATATTTTCAATGCCGTTTTGTATATGTGGATAGCTTGTTTAATCTCCCTCAAACGTGCACTGTGCTTTCTCTGTTTAAGAATGGAATTTGGTGTGGAAATTTTTTACTTAGCACAGGATTCATTAGTACTTTTTGGTAAGGAAACAATGAAGTTGGGTGGATTTTAGATTCCAACACTGAAGTTTTATATAAAAATGTCCTTACATAACGCTACTCAAACAATTTAAGGACAGTTCTATTGCTAATTTGGGAAGGGTTTAGTGGAATGGACATCTATTCCTCTTTCCTAAGGTTGAGAATCCATCTCTTATAAAATAGAAGACAGGACATGCCTATTCAGTTTTTTTTATGATGTATTTTTCATGTTTGAGGTACATGAAGTTTTATTCTGAACAGTAAAAGGTATGTAATACATTTATAATAAAATATGAAGGAAGATCTAAGATTTACAATACTTAGCTAGGTAATGTCTTATAGTGAAGGTTTATAAAAGAAACCTAAATGCAATGAGTATATTTTCTAGTTGTTTCAAAATAACTAAGAATAGGAATTTGAAACAGAATTTCATGTAACATAGTATTGTTAGTTTTACATACTTGGAAAATTAACTCCATGGTTCAAGTTCAAGTATCTGAATTTAAAATGTAAATAAATGTTTTCCCATGGTCTAATACAGTAATGCTTGAGTACCTGACAATCGATAGTTTGATAGACTTCGACAGCCACGTTACTTAAGTTGAAGTGTCCATGATTTGTAACTGTAAGCTCTCTCTAGTTGGCTTCCCATGGTCTTTCCTTTAATATCCATTGTGTTATTATTTACTGGAGTGGTGTTAAATATATCTTACTCTCGTTATGACAATTAGTGAGTCAACAATTCTGAATTTCATCAAAATTCTTTTTTCTAGTTCCTGTGGTCAGCCATCTATGAACTCATATCAGATCAACGGGATCTGTCATTTCTTTTAGTTTTATGAGACTTAAAATTTGATATTGCCGTGTGCTTATTATAACAAGTTCTATAATACTCTGCTTTTTGCAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA

mRNA sequence

ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATCGAGCCAACTGACACAATTGATCGCATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA

Coding sequence (CDS)

ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAAGTTGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCAGATTATAACATTCAAAAGGAGTCAACCCTTCACTTGGTTTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACACTGACCGGGAAGGAAATTGAGATTGACATCGAGCCAACTGACACAATTGATCGCATTAAGGAGCGGGTTGAGGAGAAAGAGGGGATTCCCCCTGTACAGCAAAGGCTCATTTATGCAGGTAAACAGCTTGGAGATGACAAAACAGCTAAAGACTACAACATCGAGGGTGGTTCTGTTCTCCATCTAGTGCTAGCCCTGAGGGGTGGTTATCTGTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL*

Homology

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BLAST of Chy11G196120 vs. ExPASy Swiss-Prot
Match: P0C030 (Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 297.4 bits (760), Expect = 9.7e-80
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

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BLAST of Chy11G196120 vs. ExPASy Swiss-Prot
Match: P0C073 (Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2)

HSP 1 Score: 297.0 bits (759), Expect = 1.3e-79
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDR+KERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of Chy11G196120 vs. ExPASy Swiss-Prot
Match: Q9SHE7 (Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 SV=3)

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-79
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG+
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 153

[Close]

BLAST of Chy11G196120 vs. ExPASy Swiss-Prot
Match: P0C031 (Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB2 PE=2 SV=2)

HSP 1 Score: 294.7 bits (753), Expect = 6.3e-79
Identity = 151/152 (99.34%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 153
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 152

[Close]

BLAST of Chy11G196120 vs. ExPASy Swiss-Prot
Match: Q8RUC6 (Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 SV=3)

HSP 1 Score: 292.4 bits (747), Expect = 3.1e-78
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQL DDKTAKDY IEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 154

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BLAST of Chy11G196120 vs. ExPASy TrEMBL
Match: A0A6J1D6N8 (ubiquitin-NEDD8-like protein RUB1 OS=Momordica charantia OX=3673 GN=LOC111018120 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 7.2e-78
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL+DGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154

[Close]

BLAST of Chy11G196120 vs. ExPASy TrEMBL
Match: A0A5D3CE17 (Ubiquitin-NEDD8-like protein RUB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00180 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG+L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGHL 154

[Close]

BLAST of Chy11G196120 vs. ExPASy TrEMBL
Match: A0A1S3C469 (ubiquitin-NEDD8-like protein RUB1 OS=Cucumis melo OX=3656 GN=LOC103496293 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG+L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGHL 154

[Close]

BLAST of Chy11G196120 vs. ExPASy TrEMBL
Match: K3ZXQ0 (Uncharacterized protein OS=Setaria italica OX=4555 GN=101756295 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of Chy11G196120 vs. ExPASy TrEMBL
Match: I1IQ69 (Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=100842080 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.6e-77
Identity = 152/153 (99.35%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGGY
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGY 153

[Close]

BLAST of Chy11G196120 vs. NCBI nr
Match: XP_004139900.1 (ubiquitin-NEDD8-like protein RUB1 [Cucumis sativus] >XP_038900398.1 ubiquitin-NEDD8-like protein RUB1 [Benincasa hispida] >KAE8646873.1 hypothetical protein Csa_020638 [Cucumis sativus])

HSP 1 Score: 301 bits (772), Expect = 4.46e-103
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154

[Close]

BLAST of Chy11G196120 vs. NCBI nr
Match: XP_022149770.1 (ubiquitin-NEDD8-like protein RUB1 [Momordica charantia])

HSP 1 Score: 300 bits (769), Expect = 1.28e-102
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL+DGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154

[Close]

BLAST of Chy11G196120 vs. NCBI nr
Match: XP_008456305.1 (PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis melo] >KAA0054675.1 ubiquitin-NEDD8-like protein RUB1 [Cucumis melo var. makuwa] >TYK08596.1 ubiquitin-NEDD8-like protein RUB1 [Cucumis melo var. makuwa])

HSP 1 Score: 300 bits (767), Expect = 2.58e-102
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG+L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGHL 154

[Close]

BLAST of Chy11G196120 vs. NCBI nr
Match: XP_028067984.1 (ubiquitin-NEDD8-like protein RUB2 [Camellia sinensis] >XP_028947901.1 ubiquitin-NEDD8-like protein RUB2 isoform X1 [Malus domestica] >KAB1216920.1 Ubiquitin-NEDD8-like protein RUB2 [Morella rubra] >KAB2608029.1 polyubiquitin [Pyrus ussuriensis x Pyrus communis] >RXH76481.1 hypothetical protein DVH24_019369 [Malus domestica])

HSP 1 Score: 298 bits (763), Expect = 1.05e-101
Identity = 153/154 (99.35%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
           YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGSL 154

[Close]

BLAST of Chy11G196120 vs. NCBI nr
Match: KAA3464467.1 (ubiquitin-NEDD8-like protein RUB2 isoform X1 [Gossypium australe])

HSP 1 Score: 298 bits (763), Expect = 1.05e-101
Identity = 152/154 (98.70%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
           YAGKQL DDKTA+DYNIEGGSVLHLVLALRGGYL
Sbjct: 121 YAGKQLADDKTARDYNIEGGSVLHLVLALRGGYL 154

[Close]

BLAST of Chy11G196120 vs. TAIR 10
Match: AT1G31340.1 (related to ubiquitin 1 )

HSP 1 Score: 295.8 bits (756), Expect = 2.0e-80
Identity = 151/153 (98.69%), Postives = 152/153 (99.35%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           YAGKQL DDKTAKDYNIEGGSVLHLVLALRGG+
Sbjct: 121 YAGKQLADDKTAKDYNIEGGSVLHLVLALRGGF 153

[Close]

BLAST of Chy11G196120 vs. TAIR 10
Match: AT2G35635.1 (ubiquitin 7 )

HSP 1 Score: 292.4 bits (747), Expect = 2.2e-79
Identity = 151/154 (98.05%), Postives = 151/154 (98.05%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI
Sbjct: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 155
           YAGKQL DDKTAKDY IEGGSVLHLVLALRGG L
Sbjct: 121 YAGKQLADDKTAKDYAIEGGSVLHLVLALRGGLL 154

[Close]

BLAST of Chy11G196120 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 244.2 bits (622), Expect = 6.9e-65
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 365 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 425 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457

[Close]

BLAST of Chy11G196120 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 244.2 bits (622), Expect = 6.9e-65
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 229

[Close]

BLAST of Chy11G196120 vs. TAIR 10
Match: AT4G05050.1 (ubiquitin 11 )

HSP 1 Score: 244.2 bits (622), Expect = 6.9e-65
Identity = 123/153 (80.39%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 77  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query: 61  IQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLI 120
           IQKESTLHLVLRLRGG  I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI
Sbjct: 137 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 196

Query: 121 YAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGY 154
           +AGKQL D +T  DYNI+  S LHLVL LRGG+
Sbjct: 197 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 229

The following BLAST results are available for this feature:

BLAST of Chy11G196120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C030	9.7e-80	99.35	Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RU...	[more]
P0C073	1.3e-79	98.69	Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE...	[more]
Q9SHE7	2.8e-79	98.69	Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana OX=3702 GN=RUB1 PE=1 S...	[more]
P0C031	6.3e-79	99.34	Ubiquitin-NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica OX=39947 GN=RU...	[more]
Q8RUC6	3.1e-78	98.05	Ubiquitin-NEDD8-like protein RUB2 OS=Arabidopsis thaliana OX=3702 GN=RUB2 PE=1 S...	[more]

BLAST of Chy11G196120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D6N8	7.2e-78	99.35	ubiquitin-NEDD8-like protein RUB1 OS=Momordica charantia OX=3673 GN=LOC111018120...	[more]
A0A5D3CE17	1.2e-77	99.35	Ubiquitin-NEDD8-like protein RUB1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C469	1.2e-77	99.35	ubiquitin-NEDD8-like protein RUB1 OS=Cucumis melo OX=3656 GN=LOC103496293 PE=4 S...	[more]
K3ZXQ0	3.6e-77	99.35	Uncharacterized protein OS=Setaria italica OX=4555 GN=101756295 PE=4 SV=1	[more]
I1IQ69	3.6e-77	99.35	Uncharacterized protein OS=Brachypodium distachyon OX=15368 GN=100842080 PE=4 SV...	[more]

BLAST of Chy11G196120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139900.1	4.46e-103	100.00	ubiquitin-NEDD8-like protein RUB1 [Cucumis sativus] >XP_038900398.1 ubiquitin-NE...	[more]
XP_022149770.1	1.28e-102	99.35	ubiquitin-NEDD8-like protein RUB1 [Momordica charantia]	[more]
XP_008456305.1	2.58e-102	99.35	PREDICTED: ubiquitin-NEDD8-like protein RUB1 [Cucumis melo] >KAA0054675.1 ubiqui...	[more]
XP_028067984.1	1.05e-101	99.35	ubiquitin-NEDD8-like protein RUB2 [Camellia sinensis] >XP_028947901.1 ubiquitin-...	[more]
KAA3464467.1	1.05e-101	98.70	ubiquitin-NEDD8-like protein RUB2 isoform X1 [Gossypium australe]	[more]

BLAST of Chy11G196120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31340.1	2.0e-80	98.69	related to ubiquitin 1	[more]
AT2G35635.1	2.2e-79	98.05	ubiquitin 7	[more]
AT4G05320.2	6.9e-65	80.39	polyubiquitin 10	[more]
AT4G02890.1	6.9e-65	80.39	Ubiquitin family protein	[more]
AT4G05050.1	6.9e-65	80.39	ubiquitin 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019956	Ubiquitin domain	PRINTS	PR00348	UBIQUITIN	coord: 53..74 score: 91.18 coord: 11..31 score: 85.2 coord: 32..52 score: 95.05
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..72 e-value: 3.0E-35 score: 133.1 coord: 77..148 e-value: 1.2E-27 score: 107.9
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..74 e-value: 5.8E-34 score: 115.7 coord: 79..150 e-value: 6.4E-28 score: 96.3
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 77..152 score: 26.423656
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..76 score: 30.452106
None	No IPR available	GENE3D	3.10.20.90		coord: 78..153 e-value: 3.6E-34 score: 118.7 coord: 1..77 e-value: 8.3E-47 score: 159.4
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..152
None	No IPR available	PANTHER	PTHR10666:SF364	SUBFAMILY NOT NAMED	coord: 1..152
None	No IPR available	CDD	cd01803	Ubl_ubiquitin	coord: 1..76 e-value: 2.81362E-51 score: 156.065
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 103..128
IPR019954	Ubiquitin conserved site	PROSITE	PS00299	UBIQUITIN_1	coord: 27..52
IPR038738	Nedd8-like ubiquitin	CDD	cd01806	Ubl_NEDD8	coord: 79..152 e-value: 1.32508E-47 score: 146.765
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..76
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 78..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G196120.1	Chy11G196120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019941	modification-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0031386	protein tag
molecular_function	GO:0031625	ubiquitin protein ligase binding
molecular_function	GO:0005515	protein binding