Chy11G195740 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G195740
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	heat shock factor protein HSF30-like isoform X1
Location	chrH11: 14015330 .. 14015497 (+)
RNA-Seq Expression	Chy11G195740
Synteny	Chy11G195740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTAATAATGGGGATCATGAGTTTGGAAAGAAAATGAAAATACTTGGAATTCAAGCACATCAAAATCTTGGCCTCGACATATCTCAGGATGTAAATTTTCAAAACCAAGTCCAAGAAGAGCTATTGAGCTTGCACTCTGAACTCACTGAAATCTTTCCAAAA

mRNA sequence

ATGGAGCTTAATAATGGGGATCATGAGTTTGGAAAGAAAATGAAAATACTTGGAATTCAAGCACATCAAAATCTTGGCCTCGACATATCTCAGGATGTAAATTTTCAAAACCAAGTCCAAGAAGAGCTATTGAGCTTGCACTCTGAACTCACTGAAATCTTTCCAAAA

Coding sequence (CDS)

ATGGAGCTTAATAATGGGGATCATGAGTTTGGAAAGAAAATGAAAATACTTGGAATTCAAGCACATCAAAATCTTGGCCTCGACATATCTCAGGATGTAAATTTTCAAAACCAAGTCCAAGAAGAGCTATTGAGCTTGCACTCTGAACTCACTGAAATCTTTCCAAAA

Protein sequence

MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK

Homology

[Close]

BLAST of Chy11G195740 vs. ExPASy TrEMBL
Match: A0A0A0LEU6 (HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000390 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 57
           MELNNGDHEFGKKMKILGIQAHQNLGLDIS+DVNFQNQVQEELLSLHSELTEIFP+
Sbjct: 259 MELNNGDHEFGKKMKILGIQAHQNLGLDISEDVNFQNQVQEELLSLHSELTEIFPE 314

[Close]

BLAST of Chy11G195740 vs. ExPASy TrEMBL
Match: A0A5A7V4T3 (Heat shock factor protein HSF30-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00460 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 57
           MEL+NGDHEFGKK K+L +QAH             QNQVQEEL +LHSELTE+FP+
Sbjct: 256 MELSNGDHEFGKKRKLLAVQAH-------------QNQVQEELSTLHSELTEMFPE 298

[Close]

BLAST of Chy11G195740 vs. ExPASy TrEMBL
Match: A0A5D3CFL8 (Heat shock factor protein HSF30-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001020 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 57
           MEL+NGDHEFGKK K+L +QAH             QNQVQEEL +LHSELTE+FP+
Sbjct: 256 MELSNGDHEFGKKRKLLAVQAH-------------QNQVQEELSTLHSELTEMFPE 298

[Close]

BLAST of Chy11G195740 vs. ExPASy TrEMBL
Match: A0A1S3CAP8 (heat shock factor protein HSF30-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498575 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 57
           MEL+NGDHEFGKK K+L +QAH             QNQVQEEL +LHSELTE+FP+
Sbjct: 256 MELSNGDHEFGKKRKLLAVQAH-------------QNQVQEELSTLHSELTEMFPE 298

[Close]

BLAST of Chy11G195740 vs. ExPASy TrEMBL
Match: A0A1S4DZN7 (heat shock factor protein HSF30-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498575 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.8e-08
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 57
           MEL+NGDHEFGKK K+L +QAH             QNQVQEEL +LHSELTE+FP+
Sbjct: 256 MELSNGDHEFGKKRKLLAVQAH-------------QNQVQEELSTLHSELTEMFPE 298

[Close]

BLAST of Chy11G195740 vs. NCBI nr
Match: XP_011648602.1 (heat stress transcription factor A-7a isoform X2 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 1.94e-27
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 56
           MELNNGDHEFGKKMKILGIQAHQNLGLDIS+DVNFQNQVQEELLSLHSELTEIFP+
Sbjct: 259 MELNNGDHEFGKKMKILGIQAHQNLGLDISEDVNFQNQVQEELLSLHSELTEIFPE 314

[Close]

BLAST of Chy11G195740 vs. NCBI nr
Match: XP_004141170.1 (heat stress transcription factor A-7a isoform X1 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 2.16e-27
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 56
           MELNNGDHEFGKKMKILGIQAHQNLGLDIS+DVNFQNQVQEELLSLHSELTEIFP+
Sbjct: 259 MELNNGDHEFGKKMKILGIQAHQNLGLDISEDVNFQNQVQEELLSLHSELTEIFPE 314

[Close]

BLAST of Chy11G195740 vs. NCBI nr
Match: KAE8651490.1 (hypothetical protein Csa_019509 [Cucumis sativus])

HSP 1 Score: 111 bits (277), Expect = 2.43e-27
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1   MELNNGDHEFGKKMKILGIQAHQNLGLDISQDVNFQNQVQEELLSLHSELTEIFPK 56
           MELNNGDHEFGKKMKILGIQAHQNLGLDIS+DVNFQNQVQEELLSLHSELTEIFP+
Sbjct: 259 MELNNGDHEFGKKMKILGIQAHQNLGLDISEDVNFQNQVQEELLSLHSELTEIFPE 314

[Close]

BLAST of Chy11G195740 vs. NCBI nr
Match: XP_038890549.1 (heat stress transcription factor A-9-like isoform X2 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 1.67e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   ELNNGDHEFGKKMKILGIQAHQNLG---LDISQDVNFQNQVQEELLSLHSELTEIFP 55
           +LNN D EFGKK K L IQ HQNLG   +D S+DVN + +VQEEL+S+HSELT+IFP
Sbjct: 266 KLNNRD-EFGKKRKFLAIQGHQNLGVETIDASRDVNLETEVQEELMSMHSELTDIFP 321

[Close]

BLAST of Chy11G195740 vs. NCBI nr
Match: XP_038890548.1 (heat stress transcription factor A-9-like isoform X1 [Benincasa hispida])

HSP 1 Score: 70.9 bits (172), Expect = 1.70e-12
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 0


Query: 2   ELNNGDHEFGKKMKILGIQAHQNLG---LDISQDVNFQNQVQEELLSLHSELTEIFP 55
           +LNN D EFGKK K L IQ HQNLG   +D S+DVN + +VQEEL+S+HSELT+IFP
Sbjct: 266 KLNNRD-EFGKKRKFLAIQGHQNLGVETIDASRDVNLETEVQEELMSMHSELTDIFP 321

The following BLAST results are available for this feature:

BLAST of Chy11G195740 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G195740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEU6	1.0e-21	96.43	HSF_DOMAIN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000390 ...	[more]
A0A5A7V4T3	4.8e-08	60.71	Heat shock factor protein HSF30-like isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3CFL8	4.8e-08	60.71	Heat shock factor protein HSF30-like isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3CAP8	4.8e-08	60.71	heat shock factor protein HSF30-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DZN7	4.8e-08	60.71	heat shock factor protein HSF30-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Chy11G195740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648602.1	1.94e-27	96.43	heat stress transcription factor A-7a isoform X2 [Cucumis sativus]	[more]
XP_004141170.1	2.16e-27	96.43	heat stress transcription factor A-7a isoform X1 [Cucumis sativus]	[more]
KAE8651490.1	2.43e-27	96.43	hypothetical protein Csa_019509 [Cucumis sativus]	[more]
XP_038890549.1	1.67e-12	64.91	heat stress transcription factor A-9-like isoform X2 [Benincasa hispida]	[more]
XP_038890548.1	1.70e-12	64.91	heat stress transcription factor A-9-like isoform X1 [Benincasa hispida]	[more]

BLAST of Chy11G195740 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G195740.1	Chy11G195740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0034605	cellular response to heat
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding