Chy11G194330 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G194330
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Serine/arginine repetitive matrix protein 1-like
Location	chrH11: 11999986 .. 12000645 (+)
RNA-Seq Expression	Chy11G194330
Synteny	Chy11G194330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACGCCCCACCGGTCACCGCCGTCCAGCGCCTCTCCCGAAACCCTAACCCAATCCAACAACCAAATCGATCAACTTCATTTCACCGACGAAGATGAAATCAATCTCCTGAATTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACCAAGAATTCTCTCCCCACTCTCGATTCTCCGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAATTCTCCCACTCCGTCATCGCCGATAAGCTCCACCGACTCAAACTCCAGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGGTAATTTCACCTTCAAGGATACTTTCACGAAGAATCAAACAAAGATCAAGAAAAGAAGGGGTTGGGGTTGATGTTGATCTGAAGAACTTTCCTGTTCTTGTGGCTGAATTTTCTCGGCAGTTTCCGGGGAATGGGGTGTGGAGAGATGGGCTGAGGAGAATGGAGGAGAAGAATTTGAAGAATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAAGCCAGAAGGGCTGCTTTATTAAAGCAGCAACTTAGAACTACATAG

mRNA sequence

ATGTCAACGCCCCACCGGTCACCGCCGTCCAGCGCCTCTCCCGAAACCCTAACCCAATCCAACAACCAAATCGATCAACTTCATTTCACCGACGAAGATGAAATCAATCTCCTGAATTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACCAAGAATTCTCTCCCCACTCTCGATTCTCCGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAATTCTCCCACTCCGTCATCGCCGATAAGCTCCACCGACTCAAACTCCAGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGTTTCCGGGGAATGGGGTGTGGAGAGATGGGCTGAGGAGAATGGAGGAGAAGAATTTGAAGAATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAAGCCAGAAGGGCTGCTTTATTAAAGCAGCAACTTAGAACTACATAG

Coding sequence (CDS)

ATGTCAACGCCCCACCGGTCACCGCCGTCCAGCGCCTCTCCCGAAACCCTAACCCAATCCAACAACCAAATCGATCAACTTCATTTCACCGACGAAGATGAAATCAATCTCCTGAATTCCTACCTCCAAATCTCCAGATCCGAAAACCCCACCAAGAATTCTCTCCCCACTCTCGATTCTCCGGCCTTCGACCGCCTTCAGACCGCCGTCGGCCCCAAATTCTCCCACTCCGTCATCGCCGATAAGCTCCACCGACTCAAACTCCAGTACCACAAATTCGCAAGAACAAAGTCCTTCATCAAAACTCCTCACCAACGTCAGATCCTCGACCTCGGCCGCAGCATCTGGGGAAAATCCCCCACACCTATAACAAGAAAACCACAGTTTCCGGGGAATGGGGTGTGGAGAGATGGGCTGAGGAGAATGGAGGAGAAGAATTTGAAGAATATGAATGAGAAATGGGTTTTGTTGCATATTGAAGGGGCTGAGCTTAAAGCCAGAAGGGCTGCTTTATTAAAGCAGCAACTTAGAACTACATAG

Protein sequence

MSTPHRSPPSSASPETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWGKSPTPITRKPQFPGNGVWRDGLRRMEEKNLKNMNEKWVLLHIEGAELKARRAALLKQQLRTT*

Homology

[Close]

BLAST of Chy11G194330 vs. ExPASy TrEMBL
Match: A0A0A0KAX7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148320 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 171/221 (77.38%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 1   MSTPHRSPPSSASPETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPTLDS 60
           MST HRSPPSSASPETLTQSNNQIDQLHF DEDEINLLNSYLQISRSENPTKNSLPTLDS
Sbjct: 1   MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDS 60

Query: 61  PAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWGKSP 120
            AFDRLQTAVGPKFSHSVIADKLHRLKL YHKFARTKSFIKTPHQRQILDLGRSIWGKSP
Sbjct: 61  QAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSP 120

Query: 121 TPITRKP------------------------------------------QFPGNGVWRDG 180
           TP+TRKP                                          QFPGNGVWRDG
Sbjct: 121 TPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDG 180

[Close]

BLAST of Chy11G194330 vs. ExPASy TrEMBL
Match: A0A5A7T6T1 (Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1754G00170 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 168/225 (74.67%), Postives = 172/225 (76.44%), Query Frame = 0


Query: 1   MSTPHRSPPSSASPE------TLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNS 60
           MSTPHRS PS+ASPE      TLTQ NNQ DQLHFTDEDEINLL SYLQISRSENPTKNS
Sbjct: 1   MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 60

Query: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRS 120
           LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKL YHKFARTKSFIKTPHQRQILDLGRS
Sbjct: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 120

Query: 121 IWGKSPTPITRKP------------------------------------------QFPGN 178
           IWGKSPTPITRKP                                          QFPGN
Sbjct: 121 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 180

[Close]

BLAST of Chy11G194330 vs. ExPASy TrEMBL
Match: A0A6P3Z773 (probable transcription factor At1g61730 OS=Ziziphus jujuba OX=326968 GN=LOC107410682 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 6.3e-25
Identity = 78/206 (37.86%), Postives = 112/206 (54.37%), Query Frame = 0


Query: 2   STPHRSPPSSAS---PETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPTL 61
           +T +   PSS+S   PE  + S     Q  FT+EDE +LL  +  I++S  P+      +
Sbjct: 23  TTTNTKQPSSSSRSPPEQFSGSQKIRPQRLFTEEDETHLLQIFYHITKSSPPSS----AI 82

Query: 62  DSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWGK 121
           +SP  DR++ ++G +FSH+ I DKL RL+L+YHK ARTKS IKT H R++  + R IWG+
Sbjct: 83  NSPNLDRIEKSLGLRFSHTQIIDKLRRLRLKYHKQARTKSLIKTHHDREVYKIARKIWGR 142

Query: 122 SPT---------------------------PITRKPQF---PGNGVWRDGLRRMEEKNLK 175
             +                           P+ +   F    GN VW+ GL  +EEK LK
Sbjct: 143 KGSNSRGGKTEEEKEKEEEQRIGDVGLEEFPVLKHEAFGVLQGNVVWKKGLMGLEEKTLK 202

[Close]

BLAST of Chy11G194330 vs. ExPASy TrEMBL
Match: A0A7J6E3T6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_010047 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.2e-22
Identity = 68/188 (36.17%), Postives = 112/188 (59.57%), Query Frame = 0


Query: 1   MSTPHRSPPSSAS------PETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNS 60
           MSTP RS  ++ +       ++   S+N   +  FT+ DEI+LL S+L++S+  +P+   
Sbjct: 1   MSTPKRSTTTTTTTNLRSPTKSPPPSSNGNSRRLFTESDEIHLLKSFLKLSKQSSPSS-- 60

Query: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRS 120
              + SP  +R+QT +  KF+HS I DKL RL+++YH+ ARTKS IKTPH  ++  + R 
Sbjct: 61  --AITSPNLERIQTRLDHKFTHSQIIDKLRRLRIKYHREARTKSLIKTPHDTRLHKIARK 120

Query: 121 IWGKSPTPITRKPQFPG-----NGVWRDGLRRMEEKNLKNMNEKWVLLHIEGAELKARRA 178
           IWGK    + ++           G W +     +E+ +K + ++WVLL +E AEL +R+A
Sbjct: 121 IWGKKAQQLPKEEHAKEEKEMLKGKWWE---CSDEEKVKELQKRWVLLRMEEAELMSRKA 180

[Close]

BLAST of Chy11G194330 vs. ExPASy TrEMBL
Match: A0A7J6G1W6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_025663 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 69/189 (36.51%), Postives = 113/189 (59.79%), Query Frame = 0


Query: 1   MSTPHRSPPSS---ASPETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPT 60
           MSTP RS  ++   +  ++   S+N   +  FT+ DEI+LL S+L++S+  +P+      
Sbjct: 1   MSTPKRSTTTTNLRSPTKSPPPSSNGNSRRLFTESDEIHLLKSFLKLSKQSSPSS----A 60

Query: 61  LDSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWG 120
           + SP  +R+QT +  KF+HS I DKL RL+++YH+ ARTKS IKTPH  ++  + R IWG
Sbjct: 61  ITSPNLERIQTRLDHKFTHSQIIDKLRRLRIKYHREARTKSLIKTPHDTRLHKIARKIWG 120

Query: 121 KSPTPITR---------KPQFPGNGVWRDGLRRMEEKNLKNMNEKWVLLHIEGAELKARR 178
           K    + +         K +    G W +     +E+ +K + ++WVLL +E AEL +R+
Sbjct: 121 KKAQQLPKEEHAKEEKEKEKEMLKGKWWE---CSDEEKVKELQKRWVLLRMEEAELMSRK 180

[Close]

BLAST of Chy11G194330 vs. NCBI nr
Match: KGN46890.1 (hypothetical protein Csa_020607 [Cucumis sativus])

HSP 1 Score: 320 bits (819), Expect = 1.10e-108
Identity = 171/221 (77.38%), Postives = 174/221 (78.73%), Query Frame = 0


Query: 1   MSTPHRSPPSSASPETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPTLDS 60
           MST HRSPPSSASPETLTQSNNQIDQLHF DEDEINLLNSYLQISRSENPTKNSLPTLDS
Sbjct: 1   MSTLHRSPPSSASPETLTQSNNQIDQLHFNDEDEINLLNSYLQISRSENPTKNSLPTLDS 60

Query: 61  PAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWGKSP 120
            AFDRLQTAVGPKFSHSVIADKLHRLKL YHKFARTKSFIKTPHQRQILDLGRSIWGKSP
Sbjct: 61  QAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRSIWGKSP 120

Query: 121 TPITRKPQ------------------------------------------FPGNGVWRDG 179
           TP+TRKPQ                                          FPGNGVWRDG
Sbjct: 121 TPVTRKPQVISPSRLLSRRIKQRSITRKEGVGVDVDLKNFPVLVAEFSRQFPGNGVWRDG 180

[Close]

BLAST of Chy11G194330 vs. NCBI nr
Match: KAA0037301.1 (serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa] >TYK24183.1 serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 308 bits (788), Expect = 6.01e-104
Identity = 168/225 (74.67%), Postives = 172/225 (76.44%), Query Frame = 0


Query: 1   MSTPHRSPPSSASPETLT------QSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNS 60
           MSTPHRS PS+ASPETLT      Q NNQ DQLHFTDEDEINLL SYLQISRSENPTKNS
Sbjct: 1   MSTPHRSLPSNASPETLTLTLTLTQPNNQTDQLHFTDEDEINLLKSYLQISRSENPTKNS 60

Query: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRS 120
           LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKL YHKFARTKSFIKTPHQRQILDLGRS
Sbjct: 61  LPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLLYHKFARTKSFIKTPHQRQILDLGRS 120

Query: 121 IWGKSPTPITRKPQ------------------------------------------FPGN 177
           IWGKSPTPITRKPQ                                          FPGN
Sbjct: 121 IWGKSPTPITRKPQVISPSRILSRRIKQRSSTRKEGVGVDIDLKNFPVLVAEFSQQFPGN 180

[Close]

BLAST of Chy11G194330 vs. NCBI nr
Match: KAG6570827.1 (hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239 bits (609), Expect = 4.95e-77
Identity = 131/213 (61.50%), Postives = 151/213 (70.89%), Query Frame = 0


Query: 1   MSTPHRSPPSSASPETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPTLDS 60
           MSTPHR PPS+ASPETLT         HF++EDE+NLLN YLQI+RS NPT NS PTLDS
Sbjct: 1   MSTPHRFPPSNASPETLT---------HFSEEDELNLLNCYLQIARSANPTSNSQPTLDS 60

Query: 61  PAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWGKSP 120
           PA DR++TA+ PKF++S IADKLHRLKLQYHK ARTKS IKTPH R+IL++GRSIWGK P
Sbjct: 61  PALDRIETALRPKFTYSHIADKLHRLKLQYHKLARTKSLIKTPHHRRILEIGRSIWGKPP 120

Query: 121 TPITRKPQ------------------------------------FPGNGVWRDGLRRMEE 177
           T  T KPQ                                    FPGNGVW++GLR MEE
Sbjct: 121 TSRT-KPQAILRAIPRRIKQRSGSSKKGVDLNDFPVLLSEFSRRFPGNGVWKEGLRGMEE 180

[Close]

BLAST of Chy11G194330 vs. NCBI nr
Match: KAG6606028.1 (hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219 bits (559), Expect = 2.72e-69
Identity = 124/217 (57.14%), Postives = 146/217 (67.28%), Query Frame = 0


Query: 1   MSTPHRSPPSS-------ASPETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKN 60
           MSTP RSPPS+       A+PE LTQS     Q+HFTDEDE++LLN YL+++ S    KN
Sbjct: 1   MSTPRRSPPSTGNRASSDAAPEPLTQSQKNQLQVHFTDEDELDLLNCYLEVAGS----KN 60

Query: 61  SLPTLDSPAFDRLQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGR 120
           S PTLDSPA DR+ TA+G KF HS IADKLHRLK+QYHKFARTKSFIKTPH  +IL++GR
Sbjct: 61  SQPTLDSPALDRIATALGHKFRHSHIADKLHRLKIQYHKFARTKSFIKTPHHLRILEIGR 120

Query: 121 SIWGKSPTPITRKP-------------------------------QFPGNGVWRDGLRRM 179
           SIWGK   P T+                                 QFPGNGVWR+GL+ M
Sbjct: 121 SIWGKPHIPRTKPQVISRRIRGRSVAKKKGVDLKNFPVLVSEFSRQFPGNGVWREGLKGM 180

[Close]

BLAST of Chy11G194330 vs. NCBI nr
Match: XP_015873627.1 (probable transcription factor At1g61730 [Ziziphus jujuba])

HSP 1 Score: 122 bits (307), Expect = 5.74e-31
Identity = 77/199 (38.69%), Postives = 109/199 (54.77%), Query Frame = 0


Query: 9   PSSAS---PETLTQSNNQIDQLHFTDEDEINLLNSYLQISRSENPTKNSLPTLDSPAFDR 68
           PSS+S   PE  + S     Q  FT+EDE +LL  +  I++S  P+      ++SP  DR
Sbjct: 30  PSSSSRSPPEQFSGSQKIRPQRLFTEEDETHLLQIFYHITKSSPPSS----AINSPNLDR 89

Query: 69  LQTAVGPKFSHSVIADKLHRLKLQYHKFARTKSFIKTPHQRQILDLGRSIWGKSPT---- 128
           ++ ++G +FSH+ I DKL RL+L+YHK ARTKS IKT H R++  + R IWG+  +    
Sbjct: 90  IEKSLGLRFSHTQIIDKLRRLRLKYHKQARTKSLIKTHHDREVYKIARKIWGRKGSNSRG 149

Query: 129 -----------------------PITRKPQF---PGNGVWRDGLRRMEEKNLKNMNEKWV 174
                                  P+ +   F    GN VW+ GL  +EEK LK +NEKW+
Sbjct: 150 GKTEEEKEKEEEQRIGDVGLEEFPVLKHEAFGVLQGNVVWKKGLMGLEEKTLKGLNEKWM 209

The following BLAST results are available for this feature:

BLAST of Chy11G194330 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G194330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAX7	2.1e-84	77.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148320 PE=3 SV=1	[more]
A0A5A7T6T1	1.1e-80	74.67	Serine/arginine repetitive matrix protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A6P3Z773	6.3e-25	37.86	probable transcription factor At1g61730 OS=Ziziphus jujuba OX=326968 GN=LOC10741...	[more]
A0A7J6E3T6	2.2e-22	36.17	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_010047 PE=3 SV=1	[more]
A0A7J6G1W6	2.9e-22	36.51	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_025663 PE=3 SV=1	[more]

BLAST of Chy11G194330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46890.1	1.10e-108	77.38	hypothetical protein Csa_020607 [Cucumis sativus]	[more]
KAA0037301.1	6.01e-104	74.67	serine/arginine repetitive matrix protein 1-like [Cucumis melo var. makuwa] >TYK...	[more]
KAG6570827.1	4.95e-77	61.50	hypothetical protein SDJN03_29742, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6606028.1	2.72e-69	57.14	hypothetical protein SDJN03_03345, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_015873627.1	5.74e-31	38.69	probable transcription factor At1g61730 [Ziziphus jujuba]	[more]

BLAST of Chy11G194330 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007592	GLABROUS1 enhancer-binding protein family	PFAM	PF04504	DUF573	coord: 28..117 e-value: 4.2E-10 score: 40.2
IPR007592	GLABROUS1 enhancer-binding protein family	PANTHER	PTHR31662	BNAANNG10740D PROTEIN-RELATED	coord: 129..177
IPR007592	GLABROUS1 enhancer-binding protein family	PANTHER	PTHR31662	BNAANNG10740D PROTEIN-RELATED	coord: 11..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR31662:SF39	SUBFAMILY NOT NAMED	coord: 11..122
None	No IPR available	PANTHER	PTHR31662:SF39	SUBFAMILY NOT NAMED	coord: 129..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G194330.1	Chy11G194330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus