Chy11G193640 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G193640
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	general regulatory factor 8
Location	chrH11: 11071151 .. 11071589 (+)
RNA-Seq Expression	Chy11G193640
Synteny	Chy11G193640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAACCCTAGCGAAACCTTTCGAAAATTAGTCAAGGAACGCAATCTCCTTTTCGTTGCATACAAGAACGTGATCGGTTCTCTCCGAGCGGCTTGGGGCAACGTATCCTCCATTGAACAGAAGGAAGAATGAAGATCATGTCATCCTCGTCAAAGATTACAGATCCAATGTGTTCTACTTAAAGATGAAGGGAGATCACCACAGGATATTGCAGTTGCCGATCTTGCACCAACGCATCCAAACAGATGGACTTTCCGAAGATTCAGGTGAAGATGATGATGCGGCATTTTGGTCCAACCATGGGATTTGTCAAGCTTCAGCTCGATGCCTCATTGTCGTCGCTCCATGTTCATCTCATGGACGGATCTTAAAAGAGTTCAATTGGAATGCACGTTTGCGATCTTCTCAGTCGAAGAATTTGGATCCACGTGAATGA

mRNA sequence

ATGAAAAACCCTAGCGAAACCTTTCGAAAATTAGTCAAGGAACGCAATCTCCTTTTCGTTGCATACAAGAACGTGATCGGTTCTCTCCGAGCGGCTTGGGGCAACATGAAGGGAGATCACCACAGGATATTGCAGTTGCCGATCTTGCACCAACGCATCCAAACAGATGGACTTTCCGAAGATTCAGGTGAAGATGATGATGCGGCATTTTGGTCCAACCATGGGATTTGTCAAGCTTCAGCTCGATGCCTCATTGTCGTCGCTCCATGTTCATCTCATGGACGGATCTTAAAAGAGTTCAATTGGAATGCACGTTTGCGATCTTCTCAGTCGAAGAATTTGGATCCACGTGAATGA

Coding sequence (CDS)

ATGAAAAACCCTAGCGAAACCTTTCGAAAATTAGTCAAGGAACGCAATCTCCTTTTCGTTGCATACAAGAACGTGATCGGTTCTCTCCGAGCGGCTTGGGGCAACATGAAGGGAGATCACCACAGGATATTGCAGTTGCCGATCTTGCACCAACGCATCCAAACAGATGGACTTTCCGAAGATTCAGGTGAAGATGATGATGCGGCATTTTGGTCCAACCATGGGATTTGTCAAGCTTCAGCTCGATGCCTCATTGTCGTCGCTCCATGTTCATCTCATGGACGGATCTTAAAAGAGTTCAATTGGAATGCACGTTTGCGATCTTCTCAGTCGAAGAATTTGGATCCACGTGAATGA

Protein sequence

MKNPSETFRKLVKERNLLFVAYKNVIGSLRAAWGNMKGDHHRILQLPILHQRIQTDGLSEDSGEDDDAAFWSNHGICQASARCLIVVAPCSSHGRILKEFNWNARLRSSQSKNLDPRE*

Homology

[Close]

BLAST of Chy11G193640 vs. TAIR 10
Match: AT5G10450.1 (G-box regulating factor 6 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 12 VKERNLLFVAYKNVIGSLRAAW 34
          V+ERNLL VAYKNVIGSLRAAW
Sbjct: 45 VEERNLLSVAYKNVIGSLRAAW 66

[Close]

BLAST of Chy11G193640 vs. TAIR 10
Match: AT5G65430.1 (general regulatory factor 8 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 12 VKERNLLFVAYKNVIGSLRAAW 34
          V+ERNLL VAYKNVIGSLRAAW
Sbjct: 45 VEERNLLSVAYKNVIGSLRAAW 66

[Close]

BLAST of Chy11G193640 vs. TAIR 10
Match: AT5G65430.2 (general regulatory factor 8 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 12 VKERNLLFVAYKNVIGSLRAAW 34
          V+ERNLL VAYKNVIGSLRAAW
Sbjct: 45 VEERNLLSVAYKNVIGSLRAAW 66

[Close]

BLAST of Chy11G193640 vs. TAIR 10
Match: AT5G10450.2 (G-box regulating factor 6 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 12 VKERNLLFVAYKNVIGSLRAAW 34
          V+ERNLL VAYKNVIGSLRAAW
Sbjct: 45 VEERNLLSVAYKNVIGSLRAAW 66

[Close]

BLAST of Chy11G193640 vs. TAIR 10
Match: AT5G10450.3 (G-box regulating factor 6 )

HSP 1 Score: 43.1 bits (100), Expect = 1.8e-04
Identity = 20/22 (90.91%), Postives = 21/22 (95.45%), Query Frame = 0


Query: 12 VKERNLLFVAYKNVIGSLRAAW 34
          V+ERNLL VAYKNVIGSLRAAW
Sbjct: 45 VEERNLLSVAYKNVIGSLRAAW 66

The following BLAST results are available for this feature:

BLAST of Chy11G193640 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G193640 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G193640 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G193640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10450.1	1.8e-04	90.91	G-box regulating factor 6	[more]
AT5G65430.1	1.8e-04	90.91	general regulatory factor 8	[more]
AT5G65430.2	1.8e-04	90.91	general regulatory factor 8	[more]
AT5G10450.2	1.8e-04	90.91	G-box regulating factor 6	[more]
AT5G10450.3	1.8e-04	90.91	G-box regulating factor 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036815	14-3-3 domain superfamily	GENE3D	1.20.190.20		coord: 2..41 e-value: 7.0E-6 score: 27.5
IPR036815	14-3-3 domain superfamily	SUPERFAMILY	48445	14-3-3 protein	coord: 12..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G193640.1	Chy11G193640.1	mRNA