Chy11G193220 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G193220
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Histone deacetylase
Location	chrH11: 10112595 .. 10117065 (-)
RNA-Seq Expression	Chy11G193220
Synteny	Chy11G193220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTTGGGAGTTGGATCTTCTCGTTGTTGAGCATAGTGAGGCAGGTATTGTGGCCGCTTCTTCAACAATTCTCGAGGTTTGTTCTCTTCCCACTTTCAGCTTTTTGTTCTTATTATTGTCTTGTGTTTACTCATTCTTTACAGAAGTTGTCAATTTCCCGAACCTTTCTTTACCATATTACATTTCTCGCACCCATCAAAGTTTTGCTTCCTTCACTTTTATTACGAAAACCCTGTTTCAACAACCATTCTTTTTGCCTGAATCTGGATGTTGACGTTAAGTTAGACACTATAATTTGCTCTCTTCGTTTCCTTTTTGTTGTTTTCTCTCCGAATTTGGTTTAGATGTAAAATCTGGTTGAATCCCTGTGGTTCCTGACATTTGTAGTAAGAATTTTGGTGACCCAACTCAAGTTAGGTTACCATCTTGGCTGTGCTTTTGCCCTCGAAGTCTTGCACCTTGTGCAGGTTATGGAGACAGGGGGGAATTCATTACCATCTGGGCCTGACGGTGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAGGGTCACCCAATGAAGCCGCATCGCATCAGAATGACACATGCCCTTCTTGCCCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCCAGAGACAAAGTCCTCTGCAGATTTCATGCTGATGATTATGTGGCGTTTCTTAAAAGCATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTTTGTCAGACTTATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAATGCGAAGCTTCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAACTCCTTAAACATTATGAGGTTCGTGTAGCTACTGAACTATTAACCATTAACTATTAGTTTTGTTAGATTGTTCTTTCTAATCCATCCTGAGGTTTACTTAACTGTTAACTGATGTTAAATCTTTCCTTGGTATAACCCTAAGGTCTTACCGGAAGTATGTATTTGTCCTGTGATATCATATCATATTAAGGTTGTGTACCACTGATTAACGGTAAAGAAACAAGATTACAAATATTGTTTATGAAACCTTTAGTCACCGTCGCATCATGTAGCATGGTTTTGGTTTAAATACACTCATACTGGAAATGGGATGTGATCTTGACAATTTGTGATTTTATTGTTCTTCATGTTGATCTTGTAATTTTGTGACTTCTTTATGTGCAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAGTTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGACGGAATTGATGATGAAAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGTGCTGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTACGAGGTATACAGTTTGCTTTCAAACAATAATATTTGTATGAGCAAGTGTTGGTTTCTTGTTTCTCTTGTTACAAAGTTTTGGAAAGTAAACCACTTGATCTTAATAGTTCTTAATTAGTGAGGCGAATGATATACTTTAAGATTTTGCTTGTGTTATATTGAATAGGAAGGGCATCGGAATGGAAGCATCTTACTTGACTAATGTGTTTCAAGTCTTTAAAATTTATAGGTTTTTTCAGTTTATATGACACCAGTGAACTCAATTTAAACAAATCTATATTCCTGAAAGATTGTGGTTGACTTCTTTTGTGAGCATATATATTGAAGTTTCTGACCAGCGAGGCATCAGACATTCCTTTCAATCCATCCCATTTCTGTGTTCCAAATTACAACAAAAAATTCATGTGGATAGAACTGATAAACTCTGTGACTTCATAGCAGTAGTGCATTTTACAATTTTCATGGTTGGGCAATTATATTTTCTACGAAGTTGCATTGTCCTTGATGCTAGATCGTTATTCTAAGGTTCTTTCTCATATCTCTATCATTTTTCTGACCTGCTGTTTGGCAATAAACTGTCTCATCTAATGCAGACAGGAGTTGCATTAGGGATGGAGGTTGATGATAAAATGCCACAACATGAATATTATGAGTATTTTGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTAGAAGAAATACAAGGAAAGCTGCTTGAATACCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGTAGGTTAACATGATATAATTTGTTTCATTAGTTTTGTTTATTAATTTTCCATTTTGCTATGCTGTAAAGTACACAGTTAGACGCACTTAGAAGAGTTCTTATTAGTTGCACTGCACTGTAGATATGATTTTGGATCGTCCCCTTTTAACATGAAATTATTCCTTGACTTGACCTCATATTTTGCAAGCTTCAACAACTTTGAAAATTTCTTTTTGATGCAGATTATAACTCACATTTCCTTTTACTAGTCAATAATTTGGGATATTGTTTAAATGACGAAACTTCTGAAAATATTTACAAAAATACAAAATGTCATAGTCTATCTGTGATAGTTCACTATAGACCGAGATAGATTACTATCTGGGTTACGATAGACCCAAATTGTAGTTTTTGTCCAGCTTTGGTTTATGCTGTAATTGTCTGTCTTTGTTATTCCCTTCCATAGGCTTAGTTTTAGCCTTGGATTTTTATATTTCGGTTAATTTGTTTGGATATGATGAGGGTCCTAAGGAGGTGTCAACCCAGTTGAGATGTCTTGGTGCATCTCCGCTCGTGATCCTTAGGCTTATTTGCTTTTTGCACTTTGTATAATTCTCTTGTATTTGGAGCATTAATCTCATTTCATTTTATTAACTAAGAGGTCCATTTCCATTTTTAAAAAATAGTTAGATAGAAGTACATTGCGGTCTATCGTAGACAAAAAGTAAAATTTTGCCATATTTGTAAATATTTTGGTTCATTTTGCTATATTTGAAACAACCCTAGTAATAACTACTAATCCAAGGTTTAGTTATACTTCTCAAAAAGCCTTTGGAATTTGAATTTTTTAATTTAACCCAGAGGTGTTGGTTTGATAGTCGCCTGGGCAAATAGATCCAATGTGTCTGGTTTTGCTTGTCTTCTAGCTACCGTGACAATAATTTGTCGAAAGATGTAAAATACAAAAGATGGGTTTAGTTTGATAAAATTTTATACTTGAGATGCAAATGTTGTTCCTTTTTCCATCTTTTTCTTTGTTGTTTCTTAAGAAATTGGAAACACATTTAATTTTGCAATCTACTTCATCTATCATGTCATTCGTAATCCTCCAGGCAGAAGAAGATCAAGAGGATAGGGATGAGAGATGGGATCCAGACTCGGATATGGAAGTTGATGAAGAGAGGTATTTTATTTGGTACTTGGTTTCTATTTTATTTTATCTTTTCAATCCTCAGCATCTTAACTTTTGCTTTCCTCTTGCTTTTTGAACAGAAAACCCATCCAAAGCAGAGTTAAAAGAGAGACAGTTGAATCTGAAATCAAAGATCCGGTATGTTCTAATTGAATACAGATTGTGCTATTTTTGTTCATGCCCCCATTAACCAATTCAAGCTACCATTCATGACTTTTTTCCAGCATGCCTTTTGATTCTTTATGGGCTCTTTAAATTTTTTAGGAAGTTAATCCGGAGAGTGCCAGAGGTTCAGAAAAAGCAGCAGCCGAGACTACAAGCGCAAAGGTGAAAAATCTCTAAGTGGAACCCATGAAATACTCTCTTTAAAGGTTTTGAAATAGGAAACTATCACTTCTCATTGAAATGATATGTCTAGAAAGTTTCTCCCCTTGAGTTGCTTTCTGCAGACCCCTTGACATTAAAAGGAGTTTTCTTCTCTTGTACCTTTCCATAAGCTTTTATTCAAAATTCCTGAAGTAAGATTAGAAAGATGACATGTCATCTTTAGTGCTCACATGTTTATATGTTTATTTTGCACTTGCAGGCTTTAGATATAGGTTCTCTCAAAATCGAAGAGTCAGGCGTTAAACTCGAGGAGACCAGCAAGCACAATGACCAAATCTTCCCCTAG

mRNA sequence

AAGTTTGGGAGTTGGATCTTCTCGTTGTTGAGCATAGTGAGGCAGGTATTGTGGCCGCTTCTTCAACAATTCTCGAGGTTATGGAGACAGGGGGGAATTCATTACCATCTGGGCCTGACGGTGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAGGGTCACCCAATGAAGCCGCATCGCATCAGAATGACACATGCCCTTCTTGCCCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCCAGAGACAAAGTCCTCTGCAGATTTCATGCTGATGATTATGTGGCGTTTCTTAAAAGCATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTTTGTCAGACTTATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAATGCGAAGCTTCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAACTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAGTTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGACGGAATTGATGATGAAAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGTGCTGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTACGAGACAGGAGTTGCATTAGGGATGGAGGTTGATGATAAAATGCCACAACATGAATATTATGAGTATTTTGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTAGAAGAAATACAAGGAAAGCTGCTTGAATACCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAAGAAGATCAAGAGGATAGGGATGAGAGATGGGATCCAGACTCGGATATGGAAGTTGATGAAGAGAGAAAACCCATCCAAAGCAGAGTTAAAAGAGAGACAGTTGAATCTGAAATCAAAGATCCGGAAGTTAATCCGGAGAGTGCCAGAGGTTCAGAAAAAGCAGCAGCCGAGACTACAAGCGCAAAGGCTTTAGATATAGGTTCTCTCAAAATCGAAGAGTCAGGCGTTAAACTCGAGGAGACCAGCAAGCACAATGACCAAATCTTCCCCTAG

Coding sequence (CDS)

AAGTTTGGGAGTTGGATCTTCTCGTTGTTGAGCATAGTGAGGCAGGTATTGTGGCCGCTTCTTCAACAATTCTCGAGGTTATGGAGACAGGGGGGAATTCATTACCATCTGGGCCTGACGGTGTGAAGAGGAAGGTCTGCTATTTCTACGACCCTGAGGTTGGGAATTACTATTATGGGCAGGGTCACCCAATGAAGCCGCATCGCATCAGAATGACACATGCCCTTCTTGCCCATTATGGCTTACTCCAGCATATGCAGGTCTTCAAGCCTCTTCCTGCCAGAGACAAAGTCCTCTGCAGATTTCATGCTGATGATTATGTGGCGTTTCTTAAAAGCATTACCCCTGAAACGCAGCAAGACCAGCTGAGACAGCTTAAGCGCTTCAATGTCGGTGAGGACTGTCCTGTCTTTGATGGCCTCTATTCTTTTTGTCAGACTTATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTTAATTGGTCTGGTGGGCTACACCATGCGAAGAAATGCGAAGCTTCTGGGTTTTGTTATGTCAATGATATTGTTTTGGCGATACTGGAACTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGGCTTTTTATACAACCGACAGGGTCATGACTGTATCGTTCCACAAGTTTGGAGATTATTTTCCTGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCCCTTAATGTTCCTTTGGATGACGGAATTGATGATGAAAGCTATCATTTCTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAAACCTGGTGCTGTTGTTCTCCAGTGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGCAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTATACTATCCGTAATGTTGCTCGCTGCTGGTGCTACGAGACAGGAGTTGCATTAGGGATGGAGGTTGATGATAAAATGCCACAACATGAATATTATGAGTATTTTGGCCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCAAATGTTAGAAGAAATACAAGGAAAGCTGCTTGAATACCTTTCAAGGCTTCAGCATGCCCCCAGTGTTCAGTTTCAAGAAAGACCTCCTGATACTGAACTCCCAGAGGCAGAAGAAGATCAAGAGGATAGGGATGAGAGATGGGATCCAGACTCGGATATGGAAGTTGATGAAGAGAGAAAACCCATCCAAAGCAGAGTTAAAAGAGAGACAGTTGAATCTGAAATCAAAGATCCGGAAGTTAATCCGGAGAGTGCCAGAGGTTCAGAAAAAGCAGCAGCCGAGACTACAAGCGCAAAGGCTTTAGATATAGGTTCTCTCAAAATCGAAGAGTCAGGCGTTAAACTCGAGGAGACCAGCAAGCACAATGACCAAATCTTCCCCTAG

Protein sequence

KFGSWIFSLLSIVRQVLWPLLQQFSRLWRQGGIHYHLGLTV*RGRSAISTTLRLGITIMGRVTQ*SRIASE*HMPFLPIMAYSSICRSSSLFLPETKSSADFMLMIMWRFLKALPLKRSKTS*DSLSASMSVRTVLSLMASILFVRLMLVDLLVVPLS*TIRFVILLLIGLVGYTMRRNAKLLGFVMSMILFWRYWNSLNIMSVFYMLTLISTMEMVLKRLFIQPTGS*LYRSTSLEIIFLVQEI*ETLVMGKESTTPLMFLWMTELMMKAIISCSNL*WEKLWKFLNLVLLFSSVVLTLFLAIG*DALTCQ*KVMQSVLDI*DHSMCLYYCLVGVAILSVMLLAAGATRQELH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSMPPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKRENPSKAELKERQLNLKSKIRKLIRRVPEVQKKQQPRLQAQRL*I*VLSKSKSQALNSRRPASTMTKSSPX

Homology

[Close]

BLAST of Chy11G193220 vs. ExPASy TrEMBL
Match: A0A061E1X0 (Histone deacetylase OS=Theobroma cacao OX=3641 GN=TCM_007621 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.9e-12
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 0


Query: 353 LH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSMPP 412
           LH  W+L  +C NM+IM+IL    L ML  V W+T+IH    K Y  S L   Q FSM  
Sbjct: 325 LHLEWKLTTRCLNMSIMNILVQTILFMLPLVTWKTRIHGHYLKIYVISYLTISQSFSMHQ 384

Query: 413 VFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKRENPSKAE 458
           V +FKKD L L+  R  KI+ + MRDG Q + W+LM+  + S+AE
Sbjct: 385 VSNFKKDHLTLSFLRLMKIRMMEMRDGTQIQTWRLMRSASQSQAE 429

[Close]

BLAST of Chy11G193220 vs. ExPASy TrEMBL
Match: A0A0A0KA89 (Histone deacetylase OS=Cucumis sativus OX=3659 GN=Csa_6G116140 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.1e-04
Identity = 31/50 (62.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 1  KFGSWIFSLLSIVRQVLWPLLQQFSR------------LWRQGGIHYHLG 39
          KFGSWIFSLLSIVR+VLWPLLQQFSR            L  Q  + YHLG
Sbjct: 13 KFGSWIFSLLSIVRRVLWPLLQQFSRFVLFPLSAFLRILVTQLKLGYHLG 62

[Close]

BLAST of Chy11G193220 vs. NCBI nr
Match: EOX98965.1 (Histone deacetylase 1 isoform 5 [Theobroma cacao] >EOX98966.1 Histone deacetylase 1 isoform 5 [Theobroma cacao] >EOX98967.1 Histone deacetylase 1 isoform 5 [Theobroma cacao])

HSP 1 Score: 81.3 bits (199), Expect = 2.59e-12
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 0


Query: 351 QELH*GWRLMIKCHNMNIMSILALITLCMLLPVIWRTKIHTKC*KKYKESCLNTFQGFSM 410
           + LH  W+L  +C NM+IM+IL    L ML  V W+T+IH    K Y  S L   Q FSM
Sbjct: 323 EGLHLEWKLTTRCLNMSIMNILVQTILFMLPLVTWKTRIHGHYLKIYVISYLTISQSFSM 382

Query: 411 PPVFSFKKDLLILNSQRQKKIKRIGMRDGIQTRIWKLMKRENPSKAE 457
             V +FKKD L L+  R  KI+ + MRDG Q + W+LM+  + S+AE
Sbjct: 383 HQVSNFKKDHLTLSFLRLMKIRMMEMRDGTQIQTWRLMRSASQSQAE 429

The following BLAST results are available for this feature:

BLAST of Chy11G193220 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G193220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A061E1X0	7.9e-12	45.71	Histone deacetylase OS=Theobroma cacao OX=3641 GN=TCM_007621 PE=3 SV=1	[more]
A0A0A0KA89	6.1e-04	62.00	Histone deacetylase OS=Cucumis sativus OX=3659 GN=Csa_6G116140 PE=3 SV=1	[more]

BLAST of Chy11G193220 vs. NCBI nr


Match Name	E-value	Identity	Description
EOX98965.1	2.59e-12	44.86	Histone deacetylase 1 isoform 5 [Theobroma cacao] >EOX98966.1 Histone deacetylas...	[more]

BLAST of Chy11G193220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 442..462
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 485..504

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G193220.1	Chy11G193220.1	mRNA