Chy11G192760 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192760
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Protochlorophyllide reductase
Location	chrH11: 8817783 .. 8818301 (+)
RNA-Seq Expression	Chy11G192760
Synteny	Chy11G192760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCAGGTGTTCGCAGTTATTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCATTGCTGATGAGAGTATGTTCACTTCAACTGATCAATTCCCAATTTACGATGCCGCCAACAACCGTCGAACCTTCTCCTCCGCCATCTTCAACATCATTCGTGCTCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCCTCTGTTCACCGTTCCCCCGACGCCTTCTGGCTCTCCGGTGACCACTATTTTGCCTCCACTATTTCCGAAATCAACCACCTTATGGTAAGCGACGGCATGCGTTACGCCATATTGATGTAAAATCTCTAAAACTAATCTTACCAAACACACACATATATGTGTATTACAAGTATTTTAGCTTTTATTTTGGTGGTAACCTGATGAATAATCACTTGGGTTTTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTGTTTTTTTTGTTTTTGTTAAATTTGATTTAGCGTACTATGTTTCTAATTTGTTGCCAGTCCCATAATTAA

mRNA sequence

ATGTGGCAGGTGTTCGCAGTTATTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCATTGCTGATGAGAGTATGTTCACTTCAACTGATCAATTCCCAATTTACGATGCCGCCAACAACCGTCGAACCTTCTCCTCCGCCATCTTCAACATCATTCGTGCTCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCCTCTGTTCACCGTTCCCCCGACGCCTTCTGGCTCTCCGGTGACCACTATTTTGCCTCCACTATTTCCGAAATCAACCACCTTATGTCCCATAATTAA

Coding sequence (CDS)

ATGTGGCAGGTGTTCGCAGTTATTCGCCCCACCCTCCACAACTTCACTAACAGCCACCGCATTGCTGATGAGAGTATGTTCACTTCAACTGATCAATTCCCAATTTACGATGCCGCCAACAACCGTCGAACCTTCTCCTCCGCCATCTTCAACATCATTCGTGCTCCTTTCTCTATTCTCTCTTGCTTCGCTCCACCCTCTGTTCACCGTTCCCCCGACGCCTTCTGGCTCTCCGGTGACCACTATTTTGCCTCCACTATTTCCGAAATCAACCACCTTATGTCCCATAATTAA

Protein sequence

MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAANNRRTFSSAIFNIIRAPFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLMSHN*

Homology

[Close]

BLAST of Chy11G192760 vs. ExPASy TrEMBL
Match: A0A0A0KFS1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAANNRRTFSSAIFNIIRAPFSIL 60
          MWQVFA+IRPTLHNFTNSHRIADESMFTSTDQFPIY AANNRRTFSS+IFNIIRAPFSIL
Sbjct: 1  MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60

Query: 61 SCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95
          SCFAPP+VHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLM 94

[Close]

BLAST of Chy11G192760 vs. ExPASy TrEMBL
Match: A0A5A7UIL8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001420 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.6e-43
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIY-DAANNRRTFSSAIFNIIRAPFSI 60
          MW+VFAVIRPTLHNFTNSHRIADESMFT+TDQFP Y  AANNRRTFS+AIFNIIRAPFSI
Sbjct: 1  MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAANNRRTFSTAIFNIIRAPFSI 60

Query: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95
          LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95

[Close]

BLAST of Chy11G192760 vs. ExPASy TrEMBL
Match: A0A5D3CJA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00520 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.6e-43
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIY-DAANNRRTFSSAIFNIIRAPFSI 60
          MW+VFAVIRPTLHNFTN+HRIADESMFT+TDQFP Y  AANNRRTFS+AIFNIIRAPFSI
Sbjct: 1  MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANNRRTFSTAIFNIIRAPFSI 60

Query: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95
          LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95

[Close]

BLAST of Chy11G192760 vs. ExPASy TrEMBL
Match: A0A1S3C290 (uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.6e-43
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIY-DAANNRRTFSSAIFNIIRAPFSI 60
          MW+VFAVIRPTLHNFTN+HRIADESMFT+TDQFP Y  AANNRRTFS+AIFNIIRAPFSI
Sbjct: 1  MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANNRRTFSTAIFNIIRAPFSI 60

Query: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95
          LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95

[Close]

BLAST of Chy11G192760 vs. ExPASy TrEMBL
Match: A0A6J1J5Y3 (uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 5.4e-31
Identity = 72/102 (70.59%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 1   MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAANN--------RRTFSSAIFNI 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+T +FPIY  AN+         RTF SA+F+I
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTT-EFPIYAVANHHHHRRPAAHRTF-SAVFSI 60

Query: 61  IRAPFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95
           IRAPFSILSCFAPP VH S D FWLS DHYFASTISE NHLM
Sbjct: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLM 100

[Close]

BLAST of Chy11G192760 vs. NCBI nr
Match: XP_011656875.1 (uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical protein Csa_005504 [Cucumis sativus])

HSP 1 Score: 191 bits (484), Expect = 7.11e-61
Identity = 90/94 (95.74%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAANNRRTFSSAIFNIIRAPFSIL 60
          MWQVFA+IRPTLHNFTNSHRIADESMFTSTDQFPIY AANNRRTFSS+IFNIIRAPFSIL
Sbjct: 1  MWQVFALIRPTLHNFTNSHRIADESMFTSTDQFPIYAAANNRRTFSSSIFNIIRAPFSIL 60

Query: 61 SCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 94
          SCFAPP+VHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 SCFAPPAVHRSPDAFWLSGDHYFASTISEINHLM 94

[Close]

BLAST of Chy11G192760 vs. NCBI nr
Match: KAA0053319.1 (uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (466), Expect = 4.09e-58
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAA-NNRRTFSSAIFNIIRAPFSI 60
          MW+VFAVIRPTLHNFTNSHRIADESMFT+TDQFP Y AA NNRRTFS+AIFNIIRAPFSI
Sbjct: 1  MWRVFAVIRPTLHNFTNSHRIADESMFTTTDQFPTYAAAANNRRTFSTAIFNIIRAPFSI 60

Query: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 94
          LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95

[Close]

BLAST of Chy11G192760 vs. NCBI nr
Match: XP_008455967.1 (PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncharacterized protein E5676_scaffold177G00520 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (463), Expect = 1.17e-57
Identity = 88/95 (92.63%), Postives = 92/95 (96.84%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAA-NNRRTFSSAIFNIIRAPFSI 60
          MW+VFAVIRPTLHNFTN+HRIADESMFT+TDQFP Y AA NNRRTFS+AIFNIIRAPFSI
Sbjct: 1  MWRVFAVIRPTLHNFTNTHRIADESMFTTTDQFPTYAAAANNRRTFSTAIFNIIRAPFSI 60

Query: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 94
          LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM
Sbjct: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95

[Close]

BLAST of Chy11G192760 vs. NCBI nr
Match: XP_022985817.1 (uncharacterized protein LOC111483748 [Cucurbita maxima])

HSP 1 Score: 142 bits (358), Expect = 1.40e-41
Identity = 72/102 (70.59%), Postives = 81/102 (79.41%), Query Frame = 0


Query: 1   MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAANNR--------RTFSSAIFNI 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+T+ FPIY  AN+         RTFS A+F+I
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTE-FPIYAVANHHHHRRPAAHRTFS-AVFSI 60

Query: 61  IRAPFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 94
           IRAPFSILSCFAPP VH S D FWLS DHYFASTISE NHLM
Sbjct: 61  IRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLM 100

[Close]

BLAST of Chy11G192760 vs. NCBI nr
Match: XP_023513038.1 (uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142 bits (357), Expect = 2.05e-41
Identity = 72/103 (69.90%), Postives = 81/103 (78.64%), Query Frame = 0


Query: 1   MWQVFAVIRPTLHNFTNSHRIADESMFTSTDQFPIYDAANNR---------RTFSSAIFN 60
           MW++ A +RPTLHNFTNSHR+ADESMFT+T+ FPIY  AN+          RTFS A+F+
Sbjct: 1   MWRLIAALRPTLHNFTNSHRVADESMFTTTE-FPIYAVANHHHHRRRPAAHRTFS-AVFS 60

Query: 61  IIRAPFSILSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 94
           IIRAPFSILSCFAPP VH S D FWLS DHYFASTISE NHLM
Sbjct: 61  IIRAPFSILSCFAPPPVHSSADTFWLSTDHYFASTISETNHLM 101

[Close]

BLAST of Chy11G192760 vs. TAIR 10
Match: AT5G35732.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04795.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-10
Identity = 40/95 (42.11%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 1  MWQVFAVIRPTLHNFTNSHRIADES-MFTSTDQFPIYDAANNRRTFSSAIFNIIRAPFSI 60
          M Q+ +V+R  L N   S R+AD++ + +ST        AN RR   +++  I+R PFSI
Sbjct: 1  MTQMLSVLRRNLQNLRKSPRVADDTELPSSTSGAGPGVVANGRRDGFNSV--IMRFPFSI 60

Query: 61 LSCFAPPSVHRSPDAFWLSGDHYFASTISEINHLM 95
          +SCFA P V    D  W+SGD+    +ISE+NHLM
Sbjct: 61 ISCFAVPRV-SGTDGLWVSGDY---GSISEVNHLM 89

The following BLAST results are available for this feature:

BLAST of Chy11G192760 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS1	1.3e-45	95.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110050 PE=4 SV=1	[more]
A0A5A7UIL8	1.6e-43	93.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CJA9	3.6e-43	92.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C290	3.6e-43	92.63	uncharacterized protein LOC103496030 OS=Cucumis melo OX=3656 GN=LOC103496030 PE=...	[more]
A0A6J1J5Y3	5.4e-31	70.59	uncharacterized protein LOC111483748 OS=Cucurbita maxima OX=3661 GN=LOC111483748...	[more]

BLAST of Chy11G192760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656875.1	7.11e-61	95.74	uncharacterized protein LOC105435779 [Cucumis sativus] >KGN46586.1 hypothetical ...	[more]
KAA0053319.1	4.09e-58	93.68	uncharacterized protein E6C27_scaffold102G001420 [Cucumis melo var. makuwa]	[more]
XP_008455967.1	1.17e-57	92.63	PREDICTED: uncharacterized protein LOC103496030 [Cucumis melo] >TYK11891.1 uncha...	[more]
XP_022985817.1	1.40e-41	70.59	uncharacterized protein LOC111483748 [Cucurbita maxima]	[more]
XP_023513038.1	2.05e-41	69.90	uncharacterized protein LOC111777603 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy11G192760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35732.1	3.1e-10	42.11	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR48165	BNAC03G44900D PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192760.1	Chy11G192760.1	mRNA