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Chy11G192510 (gene) Cucumber (hystrix) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGGTCATTCTCCAGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACTTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTTCGTTGCTTAATGCTTTTGCGTCCGTTTTAAGTGCGAAATTTTTCTGAATCTATAGCTCTTTGAGTTTTTCTTGTTCTCCCCAAAAGTAGAACAACGAAAACAGTGTTCAATCTTCATCTTTATTTCTCTCTTCAGTGTTTTAGTTGTGAAACGTTTCAGTAAAATAAGGTAATCTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGTGGTTGGCTCCCCGAAGGTGCATAA ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGGTCATTCTCCAGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACTTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGTGGTTGGCTCCCCGAAGGTGCATAA ATGGCCTCAATTGGTGCTCGGTCTGCTTTCCGGTCATTCTCCAGTTCGGCACGCCGTGCTGCTGCTCACATCGGTTCTCAACCCAAGCCCTCATCAACTTCTCCCTTTCGCATGGCAACTAACAAACCCCTCTCTCATCGTACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTTTGGAGTCAATGATGCCATTTCACTCTGTGTCGTCCTCAGCTTTGATGACTTCAATGCTCTCTATCTCGCGCCACAGCTGTGGTTGGCTCCCCGAAGGTGCATAA MASIGARSAFRSFSSSARRAAAHIGSQPKPSSTSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHSVSSSALMTSMLSISRHSCGWLPEGA* Homology
BLAST of Chy11G192510 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 5.0e-07 Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 0
BLAST of Chy11G192510 vs. ExPASy TrEMBL
Match: A0A0A0LT36 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408420 PE=4 SV=1) HSP 1 Score: 173.3 bits (438), Expect = 4.7e-40 Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Chy11G192510 vs. ExPASy TrEMBL
Match: A0A0A0LN06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G408390 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 1.0e-39 Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Chy11G192510 vs. ExPASy TrEMBL
Match: A0A5D3BHH0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold469G00120 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39 Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Chy11G192510 vs. ExPASy TrEMBL
Match: A0A1S4E0Y3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39 Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Chy11G192510 vs. ExPASy TrEMBL
Match: A0A1S4E0X5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 5.2e-39 Identity = 88/91 (96.70%), Postives = 88/91 (96.70%), Query Frame = 0
BLAST of Chy11G192510 vs. NCBI nr
Match: KGN63196.1 (hypothetical protein Csa_022217 [Cucumis sativus]) HSP 1 Score: 175 bits (444), Expect = 4.88e-55 Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Chy11G192510 vs. NCBI nr
Match: KAE8652269.1 (hypothetical protein Csa_021983 [Cucumis sativus] >KGN63193.1 hypothetical protein Csa_022010 [Cucumis sativus]) HSP 1 Score: 174 bits (441), Expect = 1.40e-54 Identity = 89/92 (96.74%), Postives = 90/92 (97.83%), Query Frame = 0
BLAST of Chy11G192510 vs. NCBI nr
Match: XP_011649972.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 174 bits (440), Expect = 2.25e-54 Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of Chy11G192510 vs. NCBI nr
Match: XP_011649976.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X3 [Cucumis sativus] >XP_011649978.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 172 bits (437), Expect = 5.71e-54 Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of Chy11G192510 vs. NCBI nr
Match: XP_011649974.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus]) HSP 1 Score: 172 bits (437), Expect = 6.46e-54 Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0
BLAST of Chy11G192510 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12 Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Chy11G192510 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12 Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Chy11G192510 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 69.3 bits (168), Expect = 1.8e-12 Identity = 40/89 (44.94%), Postives = 58/89 (65.17%), Query Frame = 0
BLAST of Chy11G192510 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0
BLAST of Chy11G192510 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). ) HSP 1 Score: 66.2 bits (160), Expect = 1.5e-11 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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