Chy11G192420 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G192420
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 8086894 .. 8087086 (+)
RNA-Seq Expression	Chy11G192420
Synteny	Chy11G192420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAAGGCCGAAGAGAACAGTATTCACAGACGGCATAGTTGAAGGGCTAAAAAAGTGGCAAAAAATGTCAAAACGAAGCCTTTCCAAAAAGCCATTCACTTCAAAATCAACTTATTATTTTCATTCTCAAGGTGACGGTCATTACCAAATGAAGGACAAAGACGCAAATAAATCAAACCAAGGAGGAT

mRNA sequence

ATGGGAACAAGGCCGAAGAGAACAGTATTCACAGACGGCATAGTTGAAGGGCTAAAAAAGTGGCAAAAAATGTCAAAACGAAGCCTTTCCAAAAAGCCATTCACTTCAAAATCAACTTATTATTTTCATTCTCAAGGTGACGGTCATTACCAAATGAAGGACAAAGACGCAAATAAATCAAACCAAGGAGGAT

Coding sequence (CDS)

ATGGGAACAAGGCCGAAGAGAACAGTATTCACAGACGGCATAGTTGAAGGGCTAAAAAAGTGGCAAAAAATGTCAAAACGAAGCCTTTCCAAAAAGCCATTCACTTCAAAATCAACTTATTATTTTCATTCTCAAGGTGACGGTCATTACCAAATGAAGGACAAAGACGCAAATAAATCAAACCAAGGAGGAT

Protein sequence

MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKPFTSKSTYYFHSQGDGHYQMKDKDANKSNQGGX

Homology

[Close]

BLAST of Chy11G192420 vs. NCBI nr
Match: KAE8652274.1 (hypothetical protein Csa_022531 [Cucumis sativus])

HSP 1 Score: 124 bits (312), Expect = 3.56e-32
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1   MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKPFTSKSTYYFHSQGDGHYQMKDKDANKS 60
           MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKK FTSKSTYYFHSQGDGHYQMKDK+ANKS
Sbjct: 291 MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKAFTSKSTYYFHSQGDGHYQMKDKEANKS 350

Query: 61  NQGG 64
            QGG
Sbjct: 351 KQGG 354

[Close]

BLAST of Chy11G192420 vs. NCBI nr
Match: XP_011650211.2 (MLO-like protein 12 [Cucumis sativus])

HSP 1 Score: 124 bits (312), Expect = 1.60e-31
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1   MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKPFTSKSTYYFHSQGDGHYQMKDKDANKS 60
           MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKK FTSKSTYYFHSQGDGHYQMKDK+ANKS
Sbjct: 431 MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKAFTSKSTYYFHSQGDGHYQMKDKEANKS 490

Query: 61  NQGG 64
            QGG
Sbjct: 491 KQGG 494

[Close]

BLAST of Chy11G192420 vs. NCBI nr
Match: XP_038900736.1 (MLO-like protein 12 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 1.70e-16
Identity = 46/64 (71.88%), Postives = 49/64 (76.56%), Query Frame = 0


Query: 1   MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKPFTSKSTYYFHSQGDGHYQMKDKDANKS 60
           MGTR KRTVFTD IVEGLKKWQK SKRSLS KP TSKST  FHS    HYQMK+++  K 
Sbjct: 428 MGTRLKRTVFTDSIVEGLKKWQKRSKRSLSNKPSTSKSTS-FHSYSHRHYQMKEEEEAKL 487

Query: 61  NQGG 64
            QGG
Sbjct: 488 EQGG 490

[Close]

BLAST of Chy11G192420 vs. NCBI nr
Match: XP_022970740.1 (MLO-like protein 12 [Cucurbita maxima])

HSP 1 Score: 50.8 bits (120), Expect = 3.12e-05
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 1   MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKPFTSKSTYY 41
           MG+  KRTVFTDGIVEGLK W+K SKR LS K   S ST Y
Sbjct: 415 MGSSLKRTVFTDGIVEGLKNWKKRSKRGLSNKQ--SSSTLY 453

[Close]

BLAST of Chy11G192420 vs. NCBI nr
Match: XP_022947792.1 (MLO-like protein 12 isoform X2 [Cucurbita moschata])

HSP 1 Score: 50.4 bits (119), Expect = 4.26e-05
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 0


Query: 1   MGTRPKRTVFTDGIVEGLKKWQKMSKRSLSKKPFTSKSTYY-----FHSQ 45
           MG+  KRTVFTDG+VEGLK W+K SKR LS K   S ST Y     FHS+
Sbjct: 355 MGSSLKRTVFTDGVVEGLKNWKKRSKRRLSNK--RSSSTRYSKSMSFHSE 402

The following BLAST results are available for this feature:

BLAST of Chy11G192420 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192420 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G192420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652274.1	3.56e-32	95.31	hypothetical protein Csa_022531 [Cucumis sativus]	[more]
XP_011650211.2	1.60e-31	95.31	MLO-like protein 12 [Cucumis sativus]	[more]
XP_038900736.1	1.70e-16	71.88	MLO-like protein 12 [Benincasa hispida]	[more]
XP_022970740.1	3.12e-05	68.29	MLO-like protein 12 [Cucurbita maxima]	[more]
XP_022947792.1	4.26e-05	60.00	MLO-like protein 12 isoform X2 [Cucurbita moschata]	[more]

BLAST of Chy11G192420 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G192420.1	Chy11G192420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0016020	membrane