Chy11G191130 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G191130
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RNA polymerase sigma factor sigA
Location	chrH11: 5863106 .. 5865819 (-)
RNA-Seq Expression	Chy11G191130
Synteny	Chy11G191130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCTAAGAGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTTTGTATGCTAATGACTATAGGTTGGGACAAACTCAAGTTTCCTCTTCAAAGAGTGTGGTAATAGCAAAAAGTTCAGCTAACTTCTCTCCAAGGTATCCGTCGTCGAATCGGCACTCTCAGCAATGCATCAAAGCTGTGAAGGAACATGTAGAAACTCCATCTTCTCCGATAGCAGAGCCGTGGCTTCATAACACCACAAGCTGGGAAGATGAAGAAACTGAGCTGAAATATACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAGTCTATCTTTTGAGCAAACCGTGTCAACCGATACGCCTAGAGAAAAGACGCTGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGTAAACATGTTTTTATGGCTCAACCAAAAATCAGTAAACAGTTGAGACCTACCATTAGTCCGGAGCTACTCCAAAATCGATTAAAGGGCTATGTGAAAGGTCTATTGAGTGAAGAGTTACTTTCTCATGCCGAGGTTGTTCGTCTTTCGAAGAAAATTAAAGTTGGTCTCACATTGGAGGAGCGTAAAACCAGGTCAGGACATACTTCTTGTTCAGTTTCTCATGGTTTACTTCACCTCTGATGTACCTATAAAATTTGGTAATAGATAGTATTATTCCTGCTTTGTTTTCTGTTCATGATTAATCTCTGTTTTTATCCTAGCTTACCTGATGTGAGAAAGAAAAATATAAAGTGTTTATGTAGTTCTATTACTTCATTGATAAAACACAGTTCTAATAATGGTATCATGAACTTTACACACTTGCTCTCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGATCAAGAATGATGGAAAGTTCCTTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGAGCTGAAATGGCGGACTTGGTTCAGGTGAAAAGCTTGTGTCAACACGAACAACCTAACTCTACACCCTATTAGTAGCTTCCTTCCAATTGAAGAATTTGTTTGTGTTTAATGTAGGGCGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTATATTGGTGGATACGGCAGGTGAGGTTACAAATTCTTAGAAAAAGAGATGGATACCTCATTACCAGTTTTGTAACTGTTTTCTTATTTCGAAAAGTTGAAAGAGGTATTTTCCCATAAAAGAAAATGAAATACAAATTTGCTAGAGGTAAAATGGAATAAGAGACGTTATCAAACATGCCTAGAATAAAAGGAGAGATGAAGGGAGTATTGATAAACCAAAAAGAAGAGCCTTTTTTGAGGAAAAGTGAATCTTTGAGCTTAAACAATTAATGTAAGCATCTTTAACTTGGTGCAAGTGCAAGCATTGATGGTTCAATGTCTTCATCCATACACAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACACATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAAACTGCAAGAGAAAGGAATCACTCCATCACTTGATGTAAGTGAAATATTGTTCCCATTCAAAGGCAAATTAAATTGCAAACTAAACTTATATAAACTTATTGAACTTTTTGGGATTGCTCCTAACACTCTATTAATCTCAGAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACAGAGGTATTATTAATTTCCAAAAAACTATCCACTTTGCTCCTTCCTGTTGAGTATCTGCTTTTCATTTTCCTTATCAAACCAACAACTCATCTCTTTCAGGCAATCAGCAAGGTGTTTTCGCTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGCGAAACCCATCACAGCGTAAGCCTCGAATACCAACTCTGTTTCTGCAAACATAACATGATTCGAACTTTGTTCTCGGTTCTTGCCACTCCTTGAATTTTTTTCATTGTTGTTTTGTTTTCACAGTATATCGCAGATAACTGCCTTGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGTAAAATGATGATAGATAGACCACCAAAAATAAATAGACTTGAGGGAGTGAAAAACTACACCATTTTCATCAATATAAGATGAAAAATGTTCAGCTAGTTTGCCTATCTAAATGAATAATTGACCAAAATACACATATTGGCAGGTTGAGGTTAACCAACTCATAAATATGACACTCGGGGACCGAGAAAGAGAGATCATACGCCTTTACCATGGTCTGGATAATGAATGTCTTACATGGGAGGAAATAAGCAAACGGTAAGTCAAAGGAACTTATCTCAGCAAAATGCTAATTTCATTTTAAGTCAGCTGACAAAATGCATTTTGCTCCGAGTTTTTCAGCATAGGGTTGTCCAGAGAAAGAGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

mRNA sequence

ATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCTAAGAGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTTTGTATGCTAATGACTATAGGTTGGGACAAACTCAAGTTTCCTCTTCAAAGAGTGTGGTAATAGCAAAAAGTTCAGCTAACTTCTCTCCAAGGTATCCGTCGTCGAATCGGCACTCTCAGCAATGCATCAAAGCTGTGAAGGAACATGTAGAAACTCCATCTTCTCCGATAGCAGAGCCGTGGCTTCATAACACCACAAGCTGGGAAGATGAAGAAACTGAGCTGAAATATACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAGTCTATCTTTTGAGCAAACCGTGTCAACCGATACGCCTAGAGAAAAGACGCTGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGTAAACATGTTTTTATGGCTCAACCAAAAATCAGTAAACAGTTGAGACCTACCATTAGTCCGGAGCTACTCCAAAATCGATTAAAGGGCTATGTGAAAGGTCTATTGAGTGAAGAGTTACTTTCTCATGCCGAGGTTGTTCGTCTTTCGAAGAAAATTAAAGTTGGTCTCACATTGGAGGAGCGTAAAACCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGATCAAGAATGATGGAAAGTTCCTTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGAGCTGAAATGGCGGACTTGGTTCAGGGCGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTATATTGGTGGATACGGCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACACATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAAACTGCAAGAGAAAGGAATCACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACAGAGGCAATCAGCAAGGTGTTTTCGCTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGCGAAACCCATCACAGCTATATCGCAGATAACTGCCTTGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGTTGAGGTTAACCAACTCATAAATATGACACTCGGGGACCGAGAAAGAGAGATCATACGCCTTTACCATGGTCTGGATAATGAATGTCTTACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGAGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Coding sequence (CDS)

ATGATGGCAACAGCTGCAATAATTGGGCTTGGTGCAGCTAAGAGGCTGTTGAATTCTTCATCCTATTATTCTGATTTCACAGAAAAGATTTTGTATGCTAATGACTATAGGTTGGGACAAACTCAAGTTTCCTCTTCAAAGAGTGTGGTAATAGCAAAAAGTTCAGCTAACTTCTCTCCAAGGTATCCGTCGTCGAATCGGCACTCTCAGCAATGCATCAAAGCTGTGAAGGAACATGTAGAAACTCCATCTTCTCCGATAGCAGAGCCGTGGCTTCATAACACCACAAGCTGGGAAGATGAAGAAACTGAGCTGAAATATACTGTGGAGGCTCTTCTTTTGCTGCAAAAGTCCATGCTGGAGAAGCAATGGAGTCTATCTTTTGAGCAAACCGTGTCAACCGATACGCCTAGAGAAAAGACGCTGAAGAAAGTACCTGTCACTTGTTCTGGTGTGTCTGCACGGCAAAGGAGAATGAGTTCTAAGAGGAAAATACAGAGTAAACATGTTTTTATGGCTCAACCAAAAATCAGTAAACAGTTGAGACCTACCATTAGTCCGGAGCTACTCCAAAATCGATTAAAGGGCTATGTGAAAGGTCTATTGAGTGAAGAGTTACTTTCTCATGCCGAGGTTGTTCGTCTTTCGAAGAAAATTAAAGTTGGTCTCACATTGGAGGAGCGTAAAACCAGACTGAAGGAAAGACTAGGATGTGAGCCCTCTGAAGACCAACTAGCAATATCACTTAAGATTTCTCGTGCCGAATTACGATCAAGAATGATGGAAAGTTCCTTGGCAAGAGAGAAGCTAGCGATGAGCAATGTTCGTTTGGTAATGTCTATTGCACAAAGATATGATAACATGGGAGCTGAAATGGCGGACTTGGTTCAGGGCGGCTTGATTGGACTTCTCCGTGGGATTGAGAAGTTTGATTCTTCAAAGGGGTTTAAAATCTCAACCTATGTATATTGGTGGATACGGCAGGGTGTTTCAAGAGCATTAGTTGAGAATTCAAGAACGCTGAGATTGCCAACACATTTGCACGAAAGATTAGGATTGATTCGCAACGCCAAAGTTAAACTGCAAGAGAAAGGAATCACTCCATCACTTGATAGGATTGCAGAATCCCTCAACATGTCCAAAAAGAAAGTCAAGAATGCCACAGAGGCAATCAGCAAGGTGTTTTCGCTCGACCGAGAAGCATTCCCTTCATTAAATGGTCTTCCTGGCGAAACCCATCACAGCTATATCGCAGATAACTGCCTTGAGAACAACCCATGGCATGGAACAGACACATGGATTCTGAAGGTTGAGGTTAACCAACTCATAAATATGACACTCGGGGACCGAGAAAGAGAGATCATACGCCTTTACCATGGTCTGGATAATGAATGTCTTACATGGGAGGAAATAAGCAAACGCATAGGGTTGTCCAGAGAAAGAGTAAGGCAAGTTGGATTGGTGGCATTGGAGAAACTAAAGAAGGCAGCCAAGACAAGGAAGATGGAAGCCATGTTGCTTAAACATTAA

Protein sequence

MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSPRYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSMLEKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH*

Homology

[Close]

BLAST of Chy11G191130 vs. ExPASy Swiss-Prot
Match: O24629 (RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV=1)

HSP 1 Score: 659.1 bits (1699), Expect = 4.2e-188
Identity = 354/517 (68.47%), Postives = 427/517 (82.59%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSPR 61
           MATAA+IGL   KRLL+SS Y+SD TEK L  ND+   Q  ++S+KS + AK ++N+SP 
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWE------DEETELKYTVEALLLL 121
           +PSSNRH+Q   KA+KE V+  S+   +PWL N T  E      D++  + ++VEA+LLL
Sbjct: 61  FPSSNRHTQSA-KALKESVDVAST--EKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 120

Query: 122 QKSMLEKQWSLSFEQTVSTDTPREKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHVFM 181
           QKSMLEK W+LSFE+ VS++ P + T+  KK+PV TCSG+SARQRR+ +K+K    HV  
Sbjct: 121 QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 180

Query: 182 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRL 241
                       +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K+RL
Sbjct: 181 ----------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 240

Query: 242 KERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEM 301
           K+RLGCEPS++QLA+SLKISRAEL++ +ME  LAREKLAMSNVRLVMSIAQRYDN+GAEM
Sbjct: 241 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 300

Query: 302 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 361
           +DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLG
Sbjct: 301 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 360

Query: 362 LIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 421
           LIRNAK++LQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 361 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 420

Query: 422 HHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEIS 481
           HHSYIAD  LENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 421 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 480

Query: 482 KRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           KRIGLSRERVRQVGLVALEKLK AA+ RKMEAM+LK+
Sbjct: 481 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of Chy11G191130 vs. ExPASy Swiss-Prot
Match: Q0J7T6 (RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIGA PE=2 SV=2)

HSP 1 Score: 465.3 bits (1196), Expect = 8.8e-130
Identity = 271/526 (51.52%), Postives = 361/526 (68.63%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSD-FTEKILY--------ANDYRLGQTQVSSSKSVVI 60
           M AT A+IGL A  RLL++S   +D   +K+                G     +  +   
Sbjct: 1   MTATPAVIGLSAGNRLLSASFGPTDLMPDKVSLGVGGGGGGGGGGGGGDAMSFAPPAPAT 60

Query: 61  AKSSANFSPRYPSSNRHSQQCIKAVKEHVE-----TPSSPIAEPWLHNTTSWEDEETELK 120
            K +A  + R   S     Q ++A++ H        P  P   P   +  S      +L+
Sbjct: 61  PKLTAVAAHRLKLSPHGRAQVMRALRHHSSAAAALAPPPPPPPPPTPSPASRAAHAHDLE 120

Query: 121 YTVEALLLLQKSMLEKQWSLSFE-----QTVSTDTPREKTLK-KVPVTCSGVSARQRRMS 180
            ++EA++LLQ+SMLEKQW L F+       +      + T K  V V  S VSARQRRMS
Sbjct: 121 SSLEAIVLLQRSMLEKQWELPFDDDNHAMAIGLAEDDDDTSKATVVVARSSVSARQRRMS 180

Query: 181 SKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIK 240
            +R+ ++K         +      +SPEL+Q+R + Y++G +S+ELL+H +VV LS KIK
Sbjct: 181 GRRRGRTK---------NGAAHFAVSPELIQSRNRIYLRGTVSKELLTHKQVVHLSHKIK 240

Query: 241 VGLTLEERKTRLKERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMS 300
            G+ L++++++LKE+LG EPS  QLA SLKIS  ELRSRM ES LARE L MSN+RLV+S
Sbjct: 241 DGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPPELRSRMHESFLAREMLTMSNLRLVIS 300

Query: 301 IAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 360
           IAQ+YDN+G E+ADL+QGGLIGLLRGIEKFD+S+GF+ISTYVYWWIRQGVSRAL ENS+T
Sbjct: 301 IAQKYDNLGVELADLIQGGLIGLLRGIEKFDASRGFRISTYVYWWIRQGVSRALAENSKT 360

Query: 361 LRLPTHLHERLGLIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDRE 420
            RLPT+LHERL  IR AK +L+++GI P+++ IA SLN+S+KKV NATEA++KV SLD++
Sbjct: 361 FRLPTYLHERLIAIRGAKYELEDQGIAPTIENIAGSLNISEKKVLNATEAVNKVLSLDQQ 420

Query: 421 AFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHG 480
           AFPSLNGLPGET HSYI D  + N+PWHG + W LK EVN+L+N TL +RER+IIRLYHG
Sbjct: 421 AFPSLNGLPGETLHSYIEDQNVANDPWHGFEEWYLKEEVNKLLNSTLNERERDIIRLYHG 480

Query: 481 LDNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEAML 507
           +  +C TWE+IS++ GLSRERVRQVGL+A+EKLK AA+ + +EA+L
Sbjct: 481 IGKQCHTWEDISRQFGLSRERVRQVGLIAMEKLKHAARRKNLEALL 517

[Close]

BLAST of Chy11G191130 vs. ExPASy Swiss-Prot
Match: P26683 (RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigA PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.4e-39
Identity = 112/330 (33.94%), Postives = 185/330 (56.06%), Query Frame = 0


Query: 176 KISKQLRPTISPE--LLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLK 235
           K +K  R T S +    ++ ++ Y++ +    LL   E + L++KI   L LE  + RL 
Sbjct: 62  KAAKSRRRTQSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLS 121

Query: 236 ERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMA 295
           E+L  +P + + A ++++     R R+     A++K+  SN+RLV+SIA++Y N G    
Sbjct: 122 EKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQ 181

Query: 296 DLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGL 355
           DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E +  
Sbjct: 182 DLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISR 241

Query: 356 I-RNAKVKLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNGL 415
           I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L   
Sbjct: 242 IKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDF 301

Query: 416 ---PGETHHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDN-E 475
               GET    ++ N             +L+ ++ ++++ +L  RER+++RL +GLD+  
Sbjct: 302 IESDGETPEDQVSKN-------------LLREDLEKVLD-SLSPRERDVLRLRYGLDDGR 361

Query: 476 CLTWEEISKRIGLSRERVRQVGLVALEKLK 495
             T EEI +   ++RER+RQ+   AL KL+
Sbjct: 362 MKTLEEIGQIFNVTRERIRQIEAKALRKLR 377

[Close]

BLAST of Chy11G191130 vs. ExPASy Swiss-Prot
Match: P38023 (RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=sigA1 PE=3 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 2.5e-39
Identity = 113/331 (34.14%), Postives = 182/331 (54.98%), Query Frame = 0


Query: 173 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRL 232
           A  K   ++R T +    ++ ++ Y++ +    LL   E + L+++I   L LE  +  L
Sbjct: 74  AAAKAKAKVRKTYT----EDSIRLYLQEIGRIRLLRADEEIELARQIADLLALERIRDEL 133

Query: 233 KERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEM 292
            E+L   PS+ + A ++     E R R+     A++K+  SN+RLV+SIA++Y N G   
Sbjct: 134 LEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSF 193

Query: 293 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 352
            DL+Q G +GL+R  EKFD  KG+K STY  WWIRQ ++RA+ + SRT+RLP HL+E + 
Sbjct: 194 QDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETIS 253

Query: 353 LI-RNAKVKLQEKGITPSLDRIAESLNMSKKKV----KNATEAISKVFSLDREAFPSLNG 412
            I +  K+  QE G  P+ + IA  + M+ +K+    K+A   IS    + +E    L  
Sbjct: 254 RIKKTTKLLSQEMGRKPTEEEIATRMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGD 313

Query: 413 L---PGETHHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDN- 472
                GET    +A N             +L+ ++  +++ TL  RER+++RL +GLD+ 
Sbjct: 314 FIEADGETPEDEVAKN-------------LLREDLEGVLS-TLSPRERDVLRLRYGLDDG 373

Query: 473 ECLTWEEISKRIGLSRERVRQVGLVALEKLK 495
              T EEI +   ++RER+RQ+   AL KL+
Sbjct: 374 RMKTLEEIGQLFNVTRERIRQIEAKALRKLR 386

[Close]

BLAST of Chy11G191130 vs. ExPASy Swiss-Prot
Match: Q03065 (RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=sigB PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.4e-39
Identity = 97/293 (33.11%), Postives = 173/293 (59.04%), Query Frame = 0


Query: 206 LLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEPSEDQLAISLKISRAELRSRMMESSL 265
           LLSH + +  +++++  + +   K  L E+L  EP+  + A  +++    L  ++ +  +
Sbjct: 37  LLSHEQEIFFAQQVQQMMVMFTAKEELAEKLQREPTLQEWADKMQLKEDVLLQQLSQGQI 96

Query: 266 AREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWW 325
           A++K+  +N+RLV+SIA++Y     E  DL+Q G +GL RG+EKFD + G+K STY YWW
Sbjct: 97  AKQKMIQANLRLVVSIAKKYQKRNLEFLDLIQEGALGLERGVEKFDPTLGYKFSTYAYWW 156

Query: 326 IRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVKLQEK-GITPSLDRIAESLNMSKKKV 385
           IRQG++RA+ + SRT+RLP H+ ++L  I+  + +L +K G    +  IA++LN+   ++
Sbjct: 157 IRQGITRAIAQQSRTIRLPIHMADKLNKIKCVQRELSQKLGYIAGVTEIAQALNLEPSQI 216

Query: 386 KNATEAISKVFSLDREAFPSLNGLPGETH-HSYIADNCLENNPWHGTDTWILKVEVNQLI 445
           +   + + +  SLD        G   +T     + D+ +  +P    +  +L  +++ L+
Sbjct: 217 REYLQLVRQPVSLDMRI-----GFEQDTQLQDLLKDDGM--SPERYAERELLYQDIHNLL 276

Query: 446 NMTLGDREREIIRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVALEKLKK 496
              L  +++E++ L  GL   C LT  +IS+R+G+SRERVRQV   AL  L++
Sbjct: 277 -AKLTPQQKEVLILRFGLAGGCELTLVQISQRMGISRERVRQVEKQALTLLRR 321

[Close]

BLAST of Chy11G191130 vs. ExPASy TrEMBL
Match: A0A0A0LQR2 (RNA_pol_sigma70 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G431090 PE=3 SV=1)

HSP 1 Score: 963.8 bits (2490), Expect = 2.9e-277
Identity = 505/509 (99.21%), Postives = 508/509 (99.80%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
           RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW HNTTSWEDEETELKYTVEALLLLQKSML
Sbjct: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW-HNTTSWEDEETELKYTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWSLSFEQTVSTDTP+EKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLK+RLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKV+NATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           RVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of Chy11G191130 vs. ExPASy TrEMBL
Match: A0A5D3BME8 (RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001180 PE=3 SV=1)

HSP 1 Score: 938.7 bits (2425), Expect = 1.0e-269
Identity = 491/509 (96.46%), Postives = 496/509 (97.45%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVS +KSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            YP SNRHSQQCIKAVKEHVETPSSP AEPWL NTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD PREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Chy11G191130 vs. ExPASy TrEMBL
Match: A0A1S4E4N5 (RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV=1)

HSP 1 Score: 938.7 bits (2425), Expect = 1.0e-269
Identity = 491/509 (96.46%), Postives = 496/509 (97.45%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVS +KSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            YP SNRHSQQCIKAVKEHVETPSSP AEPWL NTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD PREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Chy11G191130 vs. ExPASy TrEMBL
Match: A0A6J1KWY7 (RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC111499522 PE=3 SV=1)

HSP 1 Score: 889.0 bits (2296), Expect = 9.1e-255
Identity = 465/509 (91.36%), Postives = 485/509 (95.28%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS++K VVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKGVVIAKHSADFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            Y  SNRH  QCIKAVKEHV+TPSSP AEPWLHNTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  SYSPSNRH-VQCIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           L+P ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGL LEE KTRLKERL C+P
Sbjct: 181 LKPNISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCDP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SE+QLAISL+ISRAELRSR+ME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILK+EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 RLENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           RVRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Chy11G191130 vs. ExPASy TrEMBL
Match: A0A6J1D604 (RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 PE=3 SV=1)

HSP 1 Score: 887.5 bits (2292), Expect = 2.7e-254
Identity = 465/509 (91.36%), Postives = 485/509 (95.28%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDF EK+LYAND+RLGQ+QVS +KSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFPEKLLYANDHRLGQSQVSPTKSVVIAKSSANFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            +PSSNRH+ QCIKAVKEHV+TPSSP  EPWL N+T WEDEE +LK TVEALLLLQKSML
Sbjct: 61  SFPSSNRHT-QCIKAVKEHVDTPSSPTVEPWLQNSTQWEDEEIDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTV TD  R +T KKVPVTCSGVSARQRRMSSKRKIQSK+ FM QPKISKQ
Sbjct: 121 EKQWNLSFEQTVPTDASRGRTQKKVPVTCSGVSARQRRMSSKRKIQSKNCFMVQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           LR TISPELLQ RLKGYVKGL+SEELLSHAEVVRLSKKIKVGL LEERKTRLKERLGCEP
Sbjct: 181 LRSTISPELLQTRLKGYVKGLVSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISR ELRSR++E SLA+EKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRTELRSRVIECSLAKEKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV+
Sbjct: 301 IGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVR 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LEN+PWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 XLENDPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           RVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of Chy11G191130 vs. NCBI nr
Match: XP_004151855.1 (RNA polymerase sigma factor sigA [Cucumis sativus] >KGN63339.1 hypothetical protein Csa_022342 [Cucumis sativus])

HSP 1 Score: 967 bits (2500), Expect = 0.0
Identity = 505/509 (99.21%), Postives = 508/509 (99.80%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
           RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW HNTTSWEDEETELKYTVEALLLLQKSML
Sbjct: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPW-HNTTSWEDEETELKYTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQWSLSFEQTVSTDTP+EKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLK+RLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKQRLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKV+NATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVQNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 508

[Close]

BLAST of Chy11G191130 vs. NCBI nr
Match: XP_016902935.1 (PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa] >TYK00943.1 RNA polymerase sigma factor sigA [Cucumis melo var. makuwa])

HSP 1 Score: 942 bits (2435), Expect = 0.0
Identity = 491/509 (96.46%), Postives = 496/509 (97.45%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMAT AIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVS +KSVVIAKSSANFSP
Sbjct: 1   MMATTAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSPTKSVVIAKSSANFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            YP SNRHSQQCIKAVKEHVETPSSP AEPWL NTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  SYPLSNRHSQQCIKAVKEHVETPSSPTAEPWLPNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD PREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDMPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEE KTRLKERLGCEP
Sbjct: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEEHKTRLKERLGCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SEDQLAISLKISRAELRSRMME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEDQLAISLKISRAELRSRMMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
           CLENNPWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 CLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAKTRKMEAML+KH
Sbjct: 481 RVRQVGLVALEKLKKAAKTRKMEAMLIKH 509

[Close]

BLAST of Chy11G191130 vs. NCBI nr
Match: XP_038902049.1 (RNA polymerase sigma factor sigA [Benincasa hispida])

HSP 1 Score: 927 bits (2395), Expect = 0.0
Identity = 487/510 (95.49%), Postives = 495/510 (97.06%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYAN-DYRLGQTQVSSSKSVVIAKSSANFS 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEKILY N D+RLGQTQVS +KSVVIAKSSANFS
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYVNNDHRLGQTQVSPTKSVVIAKSSANFS 60

Query: 61  PRYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSM 120
           P YPSSNRHSQ CIKAVKEHV+TPSSP AEPWLHNTT WEDEE +LK TVEALLLLQKSM
Sbjct: 61  PSYPSSNRHSQ-CIKAVKEHVDTPSSPTAEPWLHNTTIWEDEEIDLKCTVEALLLLQKSM 120

Query: 121 LEKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK 180
           LEKQW+LSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK
Sbjct: 121 LEKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISK 180

Query: 181 QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCE 240
           QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGL LEERKTRLKERLGCE
Sbjct: 181 QLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLALEERKTRLKERLGCE 240

Query: 241 PSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 300
           PSEDQLAISLKISRAELRSR+ME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG
Sbjct: 241 PSEDQLAISLKISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGG 300

Query: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV 360
           LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV
Sbjct: 301 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKV 360

Query: 361 KLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420
           +LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD
Sbjct: 361 RLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIAD 420

Query: 421 NCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480
           NCLENNPWHGTDTWILK EVN+LINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR
Sbjct: 421 NCLENNPWHGTDTWILKAEVNKLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSR 480

Query: 481 ERVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           ERVRQVGLVALEKLKKAAKTRKMEAMLLKH
Sbjct: 481 ERVRQVGLVALEKLKKAAKTRKMEAMLLKH 509

[Close]

BLAST of Chy11G191130 vs. NCBI nr
Match: XP_023533104.1 (RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533106.1 RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 897 bits (2317), Expect = 0.0
Identity = 467/509 (91.75%), Postives = 488/509 (95.87%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS++KSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            YP SNRH Q CIKAVKEHV+TPSSP AEPWLHNTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  SYPPSNRHVQ-CIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVF+AQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDVPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFIAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           L+P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGL LEE KTRLKERL CEP
Sbjct: 181 LKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SE+QLAISL+ISRAELRSR+ME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTWILK+EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 RLENNPWHGTDTWILKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Chy11G191130 vs. NCBI nr
Match: KAG6605170.1 (RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035161.1 RNA polymerase sigma factor sigA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 896 bits (2315), Expect = 0.0
Identity = 467/509 (91.75%), Postives = 487/509 (95.68%), Query Frame = 0


Query: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSP 60
           MMATAAIIGLGAAKRLLNSSSYYSDFTEK+LY ND+RLGQ QVS++KSVVIAK SA+FSP
Sbjct: 1   MMATAAIIGLGAAKRLLNSSSYYSDFTEKVLYLNDHRLGQNQVSTTKSVVIAKHSADFSP 60

Query: 61  RYPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWEDEETELKYTVEALLLLQKSML 120
            YP SNRH Q CIKAVKEHV+TPSSP AEPWLHNTT WEDEET+LK TVEALLLLQKSML
Sbjct: 61  SYPPSNRHVQ-CIKAVKEHVDTPSSPTAEPWLHNTTIWEDEETDLKCTVEALLLLQKSML 120

Query: 121 EKQWSLSFEQTVSTDTPREKTLKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180
           EKQW+LSFEQTVSTD PR KT KKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ
Sbjct: 121 EKQWNLSFEQTVSTDAPRGKTEKKVPVTCSGVSARQRRMSSKRKIQSKHVFMAQPKISKQ 180

Query: 181 LRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEP 240
           L+P+ISPELLQNRL+GYVKGL+SEE+L H+EVVRLSKKIKVGL LEE KTRLKERL CEP
Sbjct: 181 LKPSISPELLQNRLRGYVKGLVSEEILPHSEVVRLSKKIKVGLALEEHKTRLKERLRCEP 240

Query: 241 SEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300
           SE+QLAISL+ISRAELRSR+ME SLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL
Sbjct: 241 SEEQLAISLEISRAELRSRVMECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGL 300

Query: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360
           IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK
Sbjct: 301 IGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNAKVK 360

Query: 361 LQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420
           LQEKGITPS+DRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN
Sbjct: 361 LQEKGITPSIDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADN 420

Query: 421 CLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480
            LENNPWHGTDTW LK+EVN+LINMTL DREREIIRLYHGLDNECLTWEEISKRIGLSRE
Sbjct: 421 RLENNPWHGTDTWSLKIEVNKLINMTLEDREREIIRLYHGLDNECLTWEEISKRIGLSRE 480

Query: 481 RVRQVGLVALEKLKKAAKTRKMEAMLLKH 509
           RVRQVGLVALEKLKKAAK RKMEAMLLKH
Sbjct: 481 RVRQVGLVALEKLKKAAKMRKMEAMLLKH 508

[Close]

BLAST of Chy11G191130 vs. TAIR 10
Match: AT1G64860.1 (sigma factor A )

HSP 1 Score: 659.1 bits (1699), Expect = 3.0e-189
Identity = 354/517 (68.47%), Postives = 427/517 (82.59%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSPR 61
           MATAA+IGL   KRLL+SS Y+SD TEK L  ND+   Q  ++S+KS + AK ++N+SP 
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWE------DEETELKYTVEALLLL 121
           +PSSNRH+Q   KA+KE V+  S+   +PWL N T  E      D++  + ++VEA+LLL
Sbjct: 61  FPSSNRHTQSA-KALKESVDVAST--EKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 120

Query: 122 QKSMLEKQWSLSFEQTVSTDTPREKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHVFM 181
           QKSMLEK W+LSFE+ VS++ P + T+  KK+PV TCSG+SARQRR+ +K+K    HV  
Sbjct: 121 QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 180

Query: 182 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRL 241
                       +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K+RL
Sbjct: 181 ----------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 240

Query: 242 KERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEM 301
           K+RLGCEPS++QLA+SLKISRAEL++ +ME  LAREKLAMSNVRLVMSIAQRYDN+GAEM
Sbjct: 241 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 300

Query: 302 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 361
           +DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLG
Sbjct: 301 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 360

Query: 362 LIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 421
           LIRNAK++LQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 361 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 420

Query: 422 HHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEIS 481
           HHSYIAD  LENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 421 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 480

Query: 482 KRIGLSRERVRQVGLVALEKLKKAAKTRKMEAMLLKH 510
           KRIGLSRERVRQVGLVALEKLK AA+ RKMEAM+LK+
Sbjct: 481 KRIGLSRERVRQVGLVALEKLKHAARKRKMEAMILKN 502

[Close]

BLAST of Chy11G191130 vs. TAIR 10
Match: AT1G64860.2 (sigma factor A )

HSP 1 Score: 609.4 bits (1570), Expect = 2.7e-174
Identity = 325/483 (67.29%), Postives = 395/483 (81.78%), Query Frame = 0


Query: 2   MATAAIIGLGAAKRLLNSSSYYSDFTEKILYANDYRLGQTQVSSSKSVVIAKSSANFSPR 61
           MATAA+IGL   KRLL+SS Y+SD TEK L  ND+   Q  ++S+KS + AK ++N+SP 
Sbjct: 1   MATAAVIGLNTGKRLLSSSFYHSDVTEKFLSVNDHCSSQYHIASTKSGITAKKASNYSPS 60

Query: 62  YPSSNRHSQQCIKAVKEHVETPSSPIAEPWLHNTTSWE------DEETELKYTVEALLLL 121
           +PSSNRH+Q   KA+KE V+  S+   +PWL N T  E      D++  + ++VEA+LLL
Sbjct: 61  FPSSNRHTQSA-KALKESVDVAST--EKPWLPNGTDKELEEECYDDDDLISHSVEAILLL 120

Query: 122 QKSMLEKQWSLSFEQTVSTDTPREKTL--KKVPV-TCSGVSARQRRMSSKRKIQSKHVFM 181
           QKSMLEK W+LSFE+ VS++ P + T+  KK+PV TCSG+SARQRR+ +K+K    HV  
Sbjct: 121 QKSMLEKSWNLSFEKAVSSEYPGKGTIRKKKIPVITCSGISARQRRIGAKKKTNMTHV-- 180

Query: 182 AQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRL 241
                       +S      +++GYVKG++SE++LSH EVVRLSKKIK GL L++ K+RL
Sbjct: 181 ----------KAVSDVSSGKQVRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRL 240

Query: 242 KERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEM 301
           K+RLGCEPS++QLA+SLKISRAEL++ +ME  LAREKLAMSNVRLVMSIAQRYDN+GAEM
Sbjct: 241 KDRLGCEPSDEQLAVSLKISRAELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEM 300

Query: 302 ADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLG 361
           +DLVQGGLIGLLRGIEKFDSSKGF+ISTYVYWWIRQGVSRALV+NSRTLRLPTHLHERLG
Sbjct: 301 SDLVQGGLIGLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVDNSRTLRLPTHLHERLG 360

Query: 362 LIRNAKVKLQEKGITPSLDRIAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGET 421
           LIRNAK++LQEKGITPS+DRIAESLNMS+KKV+NATEA+SKVFSLDR+AFPSLNGLPGET
Sbjct: 361 LIRNAKLRLQEKGITPSIDRIAESLNMSQKKVRNATEAVSKVFSLDRDAFPSLNGLPGET 420

Query: 422 HHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDREREIIRLYHGLDNECLTWEEIS 476
           HHSYIAD  LENNPWHG D   LK EV++LI+ TLG+RE+EIIRLY+GLD ECLTWE+IS
Sbjct: 421 HHSYIADTRLENNPWHGYDDLALKEEVSKLISATLGEREKEIIRLYYGLDKECLTWEDIS 468

[Close]

BLAST of Chy11G191130 vs. TAIR 10
Match: AT1G08540.1 (RNApolymerase sigma subunit 2 )

HSP 1 Score: 161.8 bits (408), Expect = 1.5e-39
Identity = 139/423 (32.86%), Postives = 219/423 (51.77%), Query Frame = 0


Query: 94  NTTSWEDEETELKYTVEALLLLQKSMLEKQWSLSFEQTVSTDTPRE-KTLKKVPVTCSGV 153
           N  S  D E+E +  VE        +LE+Q S+S     +  T R+ +  K +  T SG+
Sbjct: 184 NKESIGDLESEKQEEVE--------LLEEQPSVSLAVRSTRQTERKARRAKGLEKTASGI 243

Query: 154 -SARQRRMSSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAE 213
            S +      K+++ ++ V    P   + LR T S                S +LL+  E
Sbjct: 244 PSVKTGSSPKKKRLVAQEVDHNDP--LRYLRMTTS----------------SSKLLTVRE 303

Query: 214 VVRLSKKIKVGLTLEERKTRLKERLGCEPSEDQLAISLKISRAELRSRMMESSLAREKLA 273
              LS  I+  L LE  +T L ER G +P+  Q A +  + +  LR R+   +L ++K+ 
Sbjct: 304 EHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDKMI 363

Query: 274 MSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVS 333
            SN+RLV+SIA+ Y   G  + DLVQ G  GL+RG EKFD++KGFK STY +WWI+Q V 
Sbjct: 364 KSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQAVR 423

Query: 334 RALVENSRTLRLPTHLHERLGLIRNAKVKL-QEKGITPSLDRIAESLNMSKKKVKNATEA 393
           ++L + SR +RLP H+ E    ++ A+ +L  E G  P  + IAE+  +S K++     +
Sbjct: 424 KSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKNEEIAEATGLSMKRLMAVLLS 483

Query: 394 ISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWIL-----KVEVNQLINM 453
                SLD++   + N  P E     IAD      P   T   IL     + +++++++ 
Sbjct: 484 PKPPRSLDQKIGMNQNLKPSEV----IAD------PEAVTSEDILIKEFMRQDLDKVLD- 543

Query: 454 TLGDREREIIRLYHGL-DNECLTWEEISKRIGLSRERVRQVGLVALEKLKKAAKTRKMEA 508
           +LG RE+++IR   G+ D    T +EI + +G+SRERVRQ+   A  KLK   +   ++ 
Sbjct: 544 SLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIESSAFRKLKNKKRNNHLQQ 569

[Close]

BLAST of Chy11G191130 vs. TAIR 10
Match: AT2G36990.1 (RNApolymerase sigma-subunit F )

HSP 1 Score: 151.0 bits (380), Expect = 2.6e-36
Identity = 102/313 (32.59%), Postives = 173/313 (55.27%), Query Frame = 0


Query: 194 LKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEERKTRLKERLGCEPSEDQLAISLKISR 253
           L+ ++ G  +++LL+  E   L   I+  L LE+ KT+L+ + GCEP+  + A ++ IS 
Sbjct: 235 LQLFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISS 294

Query: 254 AELRSRMMESSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSS 313
             L+S +     +REKL  +N+RLV+ IA++Y N G    DL+Q G +GL++ +EKF   
Sbjct: 295 PVLKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQ 354

Query: 314 KGFKISTYVYWWIRQGVSRALVENSRTLRLPTHLHERLGLIRNA-KVKLQEKGITPSLDR 373
            G + +TY YWWIRQ + +++ +NSRT+RLP +++  LG +  A K  +QE    PS + 
Sbjct: 355 SGCRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEARKTCVQEGNYRPSKEE 414

Query: 374 IAESLNMSKKKVKNATEAISKVFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDT 433
           +A  + +S +K+           S+ +  +   +     T      D+ +E  P      
Sbjct: 415 LAGHVGVSTEKLDKLLYNTRTPLSMQQPIWSDQD----TTFQEITPDSGIE-TPTMSVGK 474

Query: 434 WILKVEVNQLINMTLGDREREIIRLYHGLD-NECLTWEEISKRIGLSRERVRQVGLVALE 493
            +++  V  L+N+ L  +ER II+L  G+D  +  +  EI +  GLS+ERVRQ+   AL 
Sbjct: 475 QLMRNHVRNLLNV-LSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSKERVRQLESRALY 534

Query: 494 KLKKAAKTRKMEA 505
           +LK+   +  + A
Sbjct: 535 RLKQNMNSHGLHA 541

[Close]

BLAST of Chy11G191130 vs. TAIR 10
Match: AT5G13730.1 (sigma factor 4 )

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-34
Identity = 115/342 (33.63%), Postives = 164/342 (47.95%), Query Frame = 0


Query: 160 SSKRKIQSKHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKI 219
           S KR+ + +   +   ++  +       E     +   V G      LS  E V+L   +
Sbjct: 76  SEKRRKRRRRRRVGYERLEPEEEENAGVEAEAETISVPVVGASRSGFLSRLEEVQLCLYL 135

Query: 220 KVGLTLEERKTRLKERLGCEPSEDQLAISLKISRAELRSRMMESSL-----AREKLAMSN 279
           K G  L        E LG    E+++   L  S    + R     L     AREK+    
Sbjct: 136 KEGAKL--------ENLGTSVEENEMVSVLLASGRGKKKRSANEILCRRKEAREKITRCY 195

Query: 280 VRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRAL 339
            RLV+SIA  Y   G  + DL+Q G IGLLRG E+FD  +G+K+STYVYWWI+Q + RA+
Sbjct: 196 RRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLSTYVYWWIKQAILRAI 255

Query: 340 VENSRTLRLPTHLHERLGLIRNAKVKLQEK-GITPSLDRIAESLNMSKKKVKNATEAISK 399
              SR ++LP  + E    +  A   L  K    PS + IAE LN++   V+ A E    
Sbjct: 256 AHKSRLVKLPGSMWELTAKVAEASNVLTRKLRRQPSCEEIAEHLNLNVSAVRLAVERSRS 315

Query: 400 VFSLDREAFPSLNGLPGETHHSYIADNCLENNPWHGTDTWILKVEVNQLINMTLGDRERE 459
             SLDR A  +     G      I     E  P        +K E+ QL+  +L  RE  
Sbjct: 316 PVSLDRVASQN-----GRMTLQEIVRGPDETRPEEMVKREHMKHEIEQLLG-SLTARESR 375

Query: 460 IIRLYHGLDNEC-LTWEEISKRIGLSRERVRQVGLVALEKLK 495
           ++ LY GL+ E  +++EEI K + LSRERVRQ+  +AL+KL+
Sbjct: 376 VLGLYFGLNGETPMSFEEIGKSLKLSRERVRQINGIALKKLR 403

The following BLAST results are available for this feature:

BLAST of Chy11G191130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24629	4.2e-188	68.47	RNA polymerase sigma factor sigA OS=Arabidopsis thaliana OX=3702 GN=SIGA PE=1 SV...	[more]
Q0J7T6	8.8e-130	51.52	RNA polymerase sigma factor sigA OS=Oryza sativa subsp. japonica OX=39947 GN=SIG...	[more]
P26683	1.4e-39	33.94	RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UT...	[more]
P38023	2.5e-39	34.14	RNA polymerase sigma factor SigA1 OS=Synechococcus elongatus (strain PCC 7942 / ...	[more]
Q03065	9.4e-39	33.11	RNA polymerase sigma-B factor OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ...	[more]

BLAST of Chy11G191130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQR2	2.9e-277	99.21	RNA_pol_sigma70 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G43...	[more]
A0A5D3BME8	1.0e-269	96.46	RNA polymerase sigma factor sigA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S4E4N5	1.0e-269	96.46	RNA polymerase sigma factor sigA OS=Cucumis melo OX=3656 GN=LOC103501092 PE=3 SV...	[more]
A0A6J1KWY7	9.1e-255	91.36	RNA polymerase sigma factor sigA-like OS=Cucurbita maxima OX=3661 GN=LOC11149952...	[more]
A0A6J1D604	2.7e-254	91.36	RNA polymerase sigma factor sigA OS=Momordica charantia OX=3673 GN=LOC111017241 ...	[more]

BLAST of Chy11G191130 vs. NCBI nr


Match Name	Identity	Description
XP_004151855.1	99.21	RNA polymerase sigma factor sigA [Cucumis sativus] >KGN63339.1 hypothetical prot...	[more]
XP_016902935.1	96.46	PREDICTED: RNA polymerase sigma factor sigA [Cucumis melo] >KAA0066336.1 RNA pol...	[more]
XP_038902049.1	95.49	RNA polymerase sigma factor sigA [Benincasa hispida]	[more]
XP_023533104.1	91.75	RNA polymerase sigma factor sigA-like [Cucurbita pepo subsp. pepo] >XP_023533105...	[more]
KAG6605170.1	91.75	RNA polymerase sigma factor sigA, partial [Cucurbita argyrosperma subsp. sororia...	[more]

BLAST of Chy11G191130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G64860.1	3.0e-189	68.47	sigma factor A	[more]
AT1G64860.2	2.7e-174	67.29	sigma factor A	[more]
AT1G08540.1	1.5e-39	32.86	RNApolymerase sigma subunit 2	[more]
AT2G36990.1	2.6e-36	32.59	RNApolymerase sigma-subunit F	[more]
AT5G13730.1	1.4e-34	33.63	sigma factor 4	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000943	RNA polymerase sigma-70	PRINTS	PR00046	SIGMA70FCT	coord: 318..326 score: 64.52 coord: 294..307 score: 49.68 coord: 447..459 score: 37.22 coord: 467..482 score: 48.75 coord: 482..493 score: 46.67
IPR000943	RNA polymerase sigma-70	PROSITE	PS00715	SIGMA70_1	coord: 294..307
IPR007624	RNA polymerase sigma-70 region 3	PFAM	PF04539	Sigma70_r3	coord: 350..420 e-value: 2.9E-11 score: 43.3
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 425..503 e-value: 2.6E-20 score: 74.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 341..391 e-value: 4.7E-7 score: 31.8
None	No IPR available	GENE3D	1.10.601.10	RNA Polymerase Primary Sigma Factor	coord: 40..340 e-value: 4.7E-33 score: 117.1
None	No IPR available	PANTHER	PTHR30603	RNA POLYMERASE SIGMA FACTOR RPO	coord: 2..509
None	No IPR available	PANTHER	PTHR30603:SF14	RNA POLYMERASE SIGMA FACTOR SIGA	coord: 2..509
None	No IPR available	CDD	cd06171	Sigma70_r4	coord: 436..494 e-value: 3.24086E-7 score: 45.173
IPR007630	RNA polymerase sigma-70 region 4	PFAM	PF04545	Sigma70_r4	coord: 446..495 e-value: 1.2E-10 score: 40.7
IPR014284	RNA polymerase sigma-70 like domain	TIGRFAM	TIGR02937	TIGR02937	coord: 266..496 e-value: 1.7E-25 score: 87.5
IPR007627	RNA polymerase sigma-70 region 2	PFAM	PF04542	Sigma70_r2	coord: 272..339 e-value: 1.5E-16 score: 59.9
IPR013325	RNA polymerase sigma factor, region 2	SUPERFAMILY	88946	Sigma2 domain of RNA polymerase sigma factors	coord: 193..340
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 424..499
IPR013324	RNA polymerase sigma factor, region 3/4-like	SUPERFAMILY	88659	Sigma3 and sigma4 domains of RNA polymerase sigma factors	coord: 342..398

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G191130.1	Chy11G191130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071482	cellular response to light stimulus
biological_process	GO:0071461	cellular response to redox state
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:2000142	regulation of DNA-templated transcription, initiation
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016987	sigma factor activity
molecular_function	GO:0003700	DNA-binding transcription factor activity