Chy11G190870 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G190870
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 5523279 .. 5523794 (-)
RNA-Seq Expression	Chy11G190870
Synteny	Chy11G190870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAAAGATGCCAAAACCATTATCCTTTTTGGCTCTCCATTATTATTGATTCTTTTAGCTCTTGGGAAACTATGTTCAAGCTTAGGAGCTTTGGCATAGCTCTTATTATGATTCTAATGGCAATCCCAAACTTTGCTATTTTTGCCAATAGCAGAATGCTCCGATCAGAGGCCGAGCGTGGCAGTGTTCAGGAACATGATGTAGATCATGAAAAGCCAAAGAGACTAACACCACAGCCGAAAGATTCGAGCAGTAGTGGCGATCGAGTTTTTACATTGGCTTCGGGACCAAGCAGGAAGGGCGGCGGCCATTAGTCAGAAATTTTCTATACCATGTTGATTTTGGCGGAGAATTTGTTGCTTGAATTTATTTTTTTCTTATTGGGATTGTGTACATGACTTAGAAAAATTGTTTTCCTCTTTGTTTTCATTCTGTTTTGTTATTTTCATAGGTCTCACCTTGTTTGTTAATCATGAGAGACGTGCTTAATGGTTGGCCTTAAGTGATAATCTTTA

mRNA sequence

AAAGAAAGATGCCAAAACCATTATCCTTTTTGGCTCTCCATTATTATTGATTCTTTTAGCTCTTGGGAAACTATGTTCAAGCTTAGGAGCTTTGGCATAGCTCTTATTATGATTCTAATGGCAATCCCAAACTTTGCTATTTTTGCCAATAGCAGAATGCTCCGATCAGAGGCCGAGCGTGGCAGTGTTCAGGAACATGATGTAGATCATGAAAAGCCAAAGAGACTAACACCACAGCCGAAAGATTCGAGCAGTAGTGGCGATCGAGTTTTTACATTGGCTTCGGGACCAAGCAGGAAGGGCGGCGGCCATTAGTCAGAAATTTTCTATACCATGTTGATTTTGGCGGAGAATTTGTTGCTTGAATTTATTTTTTTCTTATTGGGATTGTGTACATGACTTAGAAAAATTGTTTTCCTCTTTGTTTTCATTCTGTTTTGTTATTTTCATAGGTCTCACCTTGTTTGTTAATCATGAGAGACGTGCTTAATGGTTGGCCTTAAGTGATAATCTTTA

Coding sequence (CDS)

AAAGAAAGATGCCAAAACCATTATCCTTTTTGGCTCTCCATTATTATTGATTCTTTTAGCTCTTGGGAAACTATGTTCAAGCTTAGGAGCTTTGGCATAGCTCTTATTATGATTCTAATGGCAATCCCAAACTTTGCTATTTTTGCCAATAGCAGAATGCTCCGATCAGAGGCCGAGCGTGGCAGTGTTCAGGAACATGATGTAGATCATGAAAAGCCAAAGAGACTAACACCACAGCCGAAAGATTCGAGCAGTAGTGGCGATCGAGTTTTTACATTGGCTTCGGGACCAAGCAGGAAGGGCGGCGGCCATTAGTCAGAAATTTTCTATACCATGTTGATTTTGGCGGAGAATTTGTTGCTTGAATTTATTTTTTTCTTATTGGGATTGTGTACATGACTTAGAAAAATTGTTTTCCTCTTTGTTTTCATTCTGTTTTGTTATTTTCATAGGTCTCACCTTGTTTGTTAATCATGAGAGACGTGCTTAATGGTTGGCCTTAAGTGATAATCTTTA

Protein sequence

KERCQNHYPFWLSIIIDSFSSWETMFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQEHDVDHEKPKRLTPQPKDSSSSGDRVFTLASGPSRKGGGH*SEIFYTMLILAENLLLEFIFFLLGLCT*LRKIVFLFVFILFCYFHRSHLVC*S*ETCLMVGLK**SL

Homology

[Close]

BLAST of Chy11G190870 vs. ExPASy TrEMBL
Match: A0A5A7TI98 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001340 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.2e-26
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 25  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQEHDVDHEKPKRLTPQPKDSS 84
           MFK+RS GIALIMILMAIPNFAIFA SRMLRSEAE   V+EHDVD EKPKRL PQPKDSS
Sbjct: 1   MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVD-EKPKRLIPQPKDSS 60

Query: 85  SSGDRVFTLASGPSRKGGGH 105
           SSG+RV TLASGPSRKGGGH
Sbjct: 61  SSGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of Chy11G190870 vs. ExPASy TrEMBL
Match: A0A5D3BTU1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38G00040 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 2.1e-25
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 25  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQEHDVDHEKPKRLTPQPKDSS 84
           MFK+ S GIALIMILMAIPNFAIFA SRMLRSEAE   V+EHDVD EKPKRL PQPKDSS
Sbjct: 1   MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVD-EKPKRLIPQPKDSS 60

Query: 85  SSGDRVFTLASGPSRKGGGH 105
           SSG+RV TLASGPSRKGGGH
Sbjct: 61  SSGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of Chy11G190870 vs. NCBI nr
Match: KAE8652345.1 (hypothetical protein Csa_022541, partial [Cucumis sativus])

HSP 1 Score: 194 bits (492), Expect = 6.95e-61
Identity = 97/100 (97.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 5   QNHYPFWLSIIIDSFSSWETMFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQ 64
           QNHYPFWLSIII SFSSWETMFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSV+
Sbjct: 1   QNHYPFWLSIIIHSFSSWETMFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVK 60

Query: 65  EHDVDHEKPKRLTPQPKDSSSSGDRVFTLASGPSRKGGGH 104
           EHDVD EKPKRLTPQPKDSSSSGDRVFTLASGPSRKGGGH
Sbjct: 61  EHDVDQEKPKRLTPQPKDSSSSGDRVFTLASGPSRKGGGH 100

[Close]

BLAST of Chy11G190870 vs. NCBI nr
Match: KAA0043050.1 (uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 128 bits (322), Expect = 2.59e-35
Identity = 69/80 (86.25%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 25  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQEHDVDHEKPKRLTPQPKDSS 84
           MFK+RS GIALIMILMAIPNFAIFA SRMLRSEAE   V+EHDVD EKPKRL PQPKDSS
Sbjct: 1   MFKVRSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVD-EKPKRLIPQPKDSS 60

Query: 85  SSGDRVFTLASGPSRKGGGH 104
           SSG+RV TLASGPSRKGGGH
Sbjct: 61  SSGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of Chy11G190870 vs. NCBI nr
Match: TYK01636.1 (uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (315), Expect = 2.99e-34
Identity = 68/80 (85.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 25  MFKLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQEHDVDHEKPKRLTPQPKDSS 84
           MFK+ S GIALIMILMAIPNFAIFA SRMLRSEAE   V+EHDVD EKPKRL PQPKDSS
Sbjct: 1   MFKVGSLGIALIMILMAIPNFAIFAESRMLRSEAEGDGVKEHDVD-EKPKRLIPQPKDSS 60

Query: 85  SSGDRVFTLASGPSRKGGGH 104
           SSG+RV TLASGPSRKGGGH
Sbjct: 61  SSGNRVVTLASGPSRKGGGH 79

[Close]

BLAST of Chy11G190870 vs. NCBI nr
Match: KAG6604156.1 (hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.9 bits (115), Expect = 3.87e-04
Identity = 35/87 (40.23%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 27  KLRSFGIALIMILMAIPNFAIFANSRMLRSEAERGSVQEHD-------VDHEKPKRLTPQ 86
           K+++  + LIM+LMA   F    + R LRS    GS  EH        +   +    +P+
Sbjct: 13  KMKNSSLLLIMVLMAATRFLPLVDCRPLRS----GSTIEHQRTNNGSAISSSEIAASSPE 72

Query: 87  PKDSSSSGDR--VFTLASGPSRKGGGH 104
              S SSGD    FTLASGPSRKG GH
Sbjct: 73  DSGSRSSGDGGVAFTLASGPSRKGAGH 95

The following BLAST results are available for this feature:

BLAST of Chy11G190870 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G190870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TI98	3.2e-26	86.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BTU1	2.1e-25	85.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy11G190870 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652345.1	6.95e-61	97.00	hypothetical protein Csa_022541, partial [Cucumis sativus]	[more]
KAA0043050.1	2.59e-35	86.25	uncharacterized protein E6C27_scaffold75G001340 [Cucumis melo var. makuwa]	[more]
TYK01636.1	2.99e-34	85.00	uncharacterized protein E5676_scaffold38G00040 [Cucumis melo var. makuwa]	[more]
KAG6604156.1	3.87e-04	40.23	hypothetical protein SDJN03_04765, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Chy11G190870 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G190870.1	Chy11G190870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane