Chy11G190170 (gene) Cucumber (hystrix) v1

Overview
NameChy11G190170
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTransposon Tf2-12 polyprotein
LocationchrH11: 4265592 .. 4265996 (+)
RNA-Seq ExpressionChy11G190170
SyntenyChy11G190170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAACGATTCTTCCTCTAAACAACCCAAGGGTAGAGGTTGGATGTACGTGGAGGCCAGACTCAACAACAAGGCTGCCTTACCTATGTTGGATACTGGCGCAACCAGCAACATTATTGATCTAGAAGAGGCTAAGCGGCTAGGTCTCAAGATCAAGAGGAGAGGCGACACTGAGTTGAAGATCATCAGTGCCAAGCCCACACGTAAAGTAGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGTACTCTCGATTTCCTTGTTACGCCTCTCGACGATTGCAAGATTGTCCTAGGGTTGGACTTCTTAGACAAAGCCCATGCCGTAATCAACACACTCAAGAAGACCCTGGATTTCCCTGACATACGAAGGGAGGTGCCAGGAGAGGCTTAG

mRNA sequence

ATGGAGAACGATTCTTCCTCTAAACAACCCAAGGGTAGAGGTTGGATGTACGTGGAGGCCAGACTCAACAACAAGGCTGCCTTACCTATGTTGGATACTGGCGCAACCAGCAACATTATTGATCTAGAAGAGGCTAAGCGGCTAGGTCTCAAGATCAAGAGGAGAGGCGACACTGAGTTGAAGATCATCAGTGCCAAGCCCACACGTAAAGTAGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGTACTCTCGATTTCCTTGTTACGCCTCTCGACGATTGCAAGATTGTCCTAGGGTTGGACTTCTTAGACAAAGCCCATGCCGTAATCAACACACTCAAGAAGACCCTGGATTTCCCTGACATACGAAGGGAGGTGCCAGGAGAGGCTTAG

Coding sequence (CDS)

ATGGAGAACGATTCTTCCTCTAAACAACCCAAGGGTAGAGGTTGGATGTACGTGGAGGCCAGACTCAACAACAAGGCTGCCTTACCTATGTTGGATACTGGCGCAACCAGCAACATTATTGATCTAGAAGAGGCTAAGCGGCTAGGTCTCAAGATCAAGAGGAGAGGCGACACTGAGTTGAAGATCATCAGTGCCAAGCCCACACGTAAAGTAGGATGGGCAAGAAACGTCGAGACGAGGGTAGGGAAATGGCAAGGTACTCTCGATTTCCTTGTTACGCCTCTCGACGATTGCAAGATTGTCCTAGGGTTGGACTTCTTAGACAAAGCCCATGCCGTAATCAACACACTCAAGAAGACCCTGGATTTCCCTGACATACGAAGGGAGGTGCCAGGAGAGGCTTAG

Protein sequence

MENDSSSKQPKGRGWMYVEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISAKPTRKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPDIRREVPGEA*
Homology
BLAST of Chy11G190170 vs. ExPASy TrEMBL
Match: A0A5D3E2A4 (Asp_protease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold587G00310 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.0e-32
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0

Query: 18  VEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISAKPTRKVGWARNV 77
           ++  LNNK AL MLD GAT N++D +EAKRLGL+I RR DTE+KII+ KP   + WA +V
Sbjct: 1   MDTTLNNKVALAMLDIGATKNVMDPKEAKRLGLRITRRSDTEIKIINGKPMMNIRWAWDV 60

Query: 78  ETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPDIRREVP 132
           + R+G  QG LDFL+ PL+DCKI+LGLDF+D+A+A IN  KKTL F  IRREVP
Sbjct: 61  KIRIGGCQGELDFLIAPLNDCKIILGLDFIDRAYATINLFKKTLGFSRIRREVP 114

BLAST of Chy11G190170 vs. ExPASy TrEMBL
Match: A0A5A7T2W8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00550 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.8e-32
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 0

Query: 6   SSKQPKGRGWMYVEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISA 65
           SSK+P+  G +YV+A  NNKAAL MLD GAT N++D EEAKRLGL+  RR DTE+KIISA
Sbjct: 350 SSKEPQEGGLLYVDATFNNKAALAMLDAGATHNVMDPEEAKRLGLRTTRRSDTEIKIISA 409

Query: 66  KPTRKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHA 113
           K  + +GWA++V+TRVG WQG L+FL+  LDDCKI+LGLDF+D AH+
Sbjct: 410 KSMKNIGWAQDVKTRVGGWQGKLNFLIAHLDDCKIILGLDFVDTAHS 456

BLAST of Chy11G190170 vs. ExPASy TrEMBL
Match: A0A5A7UQ97 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00090 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.0e-32
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 0

Query: 30  MLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISAKPTRKVGWARNVETRVGKWQGTLD 89
           MLDT AT+N++DL+EAKRLGL+  RR D E+KII AKP R +GW  +V+TRV  WQG LD
Sbjct: 1   MLDTDATNNVMDLKEAKRLGLRTTRRSDIEIKIIGAKPMRNLGWDWDVKTRVEGWQGKLD 60

Query: 90  FLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPDIRREVPG 133
           FL+T LDD KIV+GLDF+DKAHA IN LKKTLDFP IRRE  G
Sbjct: 61  FLITLLDDYKIVVGLDFVDKAHATINLLKKTLDFPRIRRETEG 103

BLAST of Chy11G190170 vs. ExPASy TrEMBL
Match: A0A5D3E2B7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold587G00360 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-27
Identity = 63/85 (74.12%), Postives = 72/85 (84.71%), Query Frame = 0

Query: 45  AKRLGLKIKRRGDTELKIISAKPTRKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGL 104
           AKRLGLKI RR DTE+KIISAKP R +G A +++TRVG WQG LDFL+ PL+D KIV+GL
Sbjct: 241 AKRLGLKITRRSDTEIKIISAKPLRNIGRAWDIKTRVGGWQGELDFLIAPLNDYKIVIGL 300

Query: 105 DFLDKAHAVINTLKKTLDFPDIRRE 130
           DF+DKAHA IN LKKTLDFP IRRE
Sbjct: 301 DFIDKAHATINLLKKTLDFPRIRRE 325

BLAST of Chy11G190170 vs. ExPASy TrEMBL
Match: A0A5A7T3H7 (DNA damage-inducible protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00570 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 0

Query: 69  RKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPDIRR 128
           + +GWA++V+TRVG WQG LDFL+ PLDDCKIVLGLDF+D AHA IN +KKTLDF  IR 
Sbjct: 2   KNIGWAQDVKTRVGGWQGKLDFLIAPLDDCKIVLGLDFIDTAHATINFMKKTLDFTHIRE 61

Query: 129 EVP 132
           E P
Sbjct: 62  EAP 64

BLAST of Chy11G190170 vs. NCBI nr
Match: KAE8646814.1 (hypothetical protein Csa_005402 [Cucumis sativus])

HSP 1 Score: 179 bits (453), Expect = 3.52e-52
Identity = 83/126 (65.87%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 6   SSKQPKGRGWMYVEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISA 65
           SSK+P G+G +YV+A LNN+AAL +LDTGATSNIIDLEEAKRLGLKI RR D ELKII+A
Sbjct: 144 SSKEPIGKGLLYVDATLNNQAALALLDTGATSNIIDLEEAKRLGLKITRRDDVELKIINA 203

Query: 66  KPTRKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPD 125
           +PTR  GWA NV+ ++G+W+G +DFL+ PLDDCK+VLGLDF+ +AHA ++  ++TL FP+
Sbjct: 204 EPTRNYGWAWNVKVKIGEWKGKIDFLLAPLDDCKVVLGLDFMKQAHAYVDATRETLVFPN 263

Query: 126 IRREVP 131
            +REVP
Sbjct: 264 KKREVP 269

BLAST of Chy11G190170 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus])

HSP 1 Score: 179 bits (453), Expect = 1.07e-51
Identity = 83/126 (65.87%), Postives = 107/126 (84.92%), Query Frame = 0

Query: 6   SSKQPKGRGWMYVEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISA 65
           SSK+P G+G +YV+A LNN+AAL +LDTGATSNIIDLEEAKRLGLKI RR D ELKII+A
Sbjct: 251 SSKEPIGKGLLYVDATLNNQAALALLDTGATSNIIDLEEAKRLGLKITRRDDVELKIINA 310

Query: 66  KPTRKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPD 125
           +PTR  GWA NV+ ++G+W+G +DFL+ PLDDCK+VLGLDF+ +AHA ++  ++TL FP+
Sbjct: 311 EPTRNYGWAWNVKVKIGEWKGKIDFLLAPLDDCKVVLGLDFMKQAHAYVDATRETLVFPN 370

Query: 126 IRREVP 131
            +REVP
Sbjct: 371 KKREVP 376

BLAST of Chy11G190170 vs. NCBI nr
Match: TYK30022.1 (Asp_protease domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (370), Expect = 1.21e-42
Identity = 70/114 (61.40%), Postives = 88/114 (77.19%), Query Frame = 0

Query: 18  VEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISAKPTRKVGWARNV 77
           ++  LNNK AL MLD GAT N++D +EAKRLGL+I RR DTE+KII+ KP   + WA +V
Sbjct: 1   MDTTLNNKVALAMLDIGATKNVMDPKEAKRLGLRITRRSDTEIKIINGKPMMNIRWAWDV 60

Query: 78  ETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPDIRREVP 131
           + R+G  QG LDFL+ PL+DCKI+LGLDF+D+A+A IN  KKTL F  IRREVP
Sbjct: 61  KIRIGGCQGELDFLIAPLNDCKIILGLDFIDRAYATINLFKKTLGFSRIRREVP 114

BLAST of Chy11G190170 vs. NCBI nr
Match: KAA0057354.1 (uncharacterized protein E6C27_scaffold280G002130 [Cucumis melo var. makuwa] >TYK30043.1 uncharacterized protein E5676_scaffold216G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 2.37e-40
Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 0

Query: 30  MLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISAKPTRKVGWARNVETRVGKWQGTLD 89
           MLDT AT+N++DL+EAKRLGL+  RR D E+KII AKP R +GW  +V+TRV  WQG LD
Sbjct: 1   MLDTDATNNVMDLKEAKRLGLRTTRRSDIEIKIIGAKPMRNLGWDWDVKTRVEGWQGKLD 60

Query: 90  FLVTPLDDCKIVLGLDFLDKAHAVINTLKKTLDFPDIRREVPG 132
           FL+T LDD KIV+GLDF+DKAHA IN LKKTLDFP IRRE  G
Sbjct: 61  FLITLLDDYKIVVGLDFVDKAHATINLLKKTLDFPRIRRETEG 103

BLAST of Chy11G190170 vs. NCBI nr
Match: KAA0035961.1 (uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK30442.1 uncharacterized protein E5676_scaffold349G00550 [Cucumis melo var. makuwa])

HSP 1 Score: 147 bits (372), Expect = 2.35e-39
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = 0

Query: 6   SSKQPKGRGWMYVEARLNNKAALPMLDTGATSNIIDLEEAKRLGLKIKRRGDTELKIISA 65
           SSK+P+  G +YV+A  NNKAAL MLD GAT N++D EEAKRLGL+  RR DTE+KIISA
Sbjct: 350 SSKEPQEGGLLYVDATFNNKAALAMLDAGATHNVMDPEEAKRLGLRTTRRSDTEIKIISA 409

Query: 66  KPTRKVGWARNVETRVGKWQGTLDFLVTPLDDCKIVLGLDFLDKAHA 112
           K  + +GWA++V+TRVG WQG L+FL+  LDDCKI+LGLDF+D AH+
Sbjct: 410 KSMKNIGWAQDVKTRVGGWQGKLNFLIAHLDDCKIILGLDFVDTAHS 456

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E2A41.0e-3261.40Asp_protease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5A7T2W81.8e-3264.49Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7UQ974.0e-3268.93Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E2B72.3e-2774.12Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T3H71.1e-1869.84DNA damage-inducible protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
Match NameE-valueIdentityDescription
KAE8646814.13.52e-5265.87hypothetical protein Csa_005402 [Cucumis sativus][more]
KAE8637433.11.07e-5165.87hypothetical protein CSA_004611, partial [Cucumis sativus][more]
TYK30022.11.21e-4261.40Asp_protease domain-containing protein [Cucumis melo var. makuwa][more]
KAA0057354.12.37e-4068.93uncharacterized protein E6C27_scaffold280G002130 [Cucumis melo var. makuwa] >TYK... [more]
KAA0035961.12.35e-3964.49uncharacterized protein E6C27_scaffold56G001660 [Cucumis melo var. makuwa] >TYK3... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13975gag-asp_proteascoord: 18..108
e-value: 4.6E-10
score: 39.9
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 18..107
e-value: 3.07217E-16
score: 66.9764
IPR021109Aspartic peptidase domain superfamilyGENE3D2.40.70.10Acid Proteasescoord: 2..131
e-value: 1.4E-22
score: 81.9
IPR021109Aspartic peptidase domain superfamilySUPERFAMILY50630Acid proteasescoord: 14..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G190170.1Chy11G190170.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008233 peptidase activity