Chy11G189710 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G189710
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	organ-specific protein P4-like
Location	chrH11: 3695870 .. 3696975 (-)
RNA-Seq Expression	Chy11G189710
Synteny	Chy11G189710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGGTAAGCTCTAATTCTTCTTCCTTTTTCCTTAATTGATTTCCTTTCACATATATATTTATTATATGCTTTTGTTCTAATTTTGTTGTTTTATTTTTTAATTAAGGATAATTGAAATTGAGTTTAGATTTGTGAATATTCATAGCATGATTATCATAAAACCACTGGATCATAATATATAGTCTTATGATATAGTTTGAGTTTAGTTGAGTTTTATTGTGTTAATACCTCAAGGGATATATATGTTTCTGTCTCTCTCGCCTATAGTTGTTTTTTTCGTACAAAACAGAAAAAGAAATTTCCTTTTCTCTGAGATATAGTTTGTCTAAAACAGAGTTATGAAGTTCTTTGCTTTCTTTTTTCCTTTTTTTAGGCAAATAGAATTTTGTATTCTTCAATGGAGGAATTTGTCATTGAACAGGCTAGTTTTTAAAAACGAATCTGGGTATTAGTTTTTTTCTTTTCTTTTATTGATGATTTTCTTAGAAATCTAAAAGTAAAGAAATTTGTTTAATACCTATTTTATATATAAATTAGAAATTAATTACTTTTTTCGATTTCAAAACTTGATTTAGTTTTTTTAAAACGTTCTTACAACGAAAGAACAACAAAAAAAAATGAAGGGAGTATTTTATAAGCTTAAATTATAAAAACTAAATAGTCTAAACAATAATCCTCACATGCAACTGATTTTTTAAGTCACTAAATAGTAATCAAACGGATCGGCAAAGACAATAGAATTTGATGGAGTTGTTTACATGTTTTTGAATGATGGGGTTTAATTACAGCTTGGAGATCATGCTGCAATAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTATTAGAAGATGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTATGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCAGTACACTTCCAAATTTATCCCCATGA

mRNA sequence

ATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGCTTGGAGATCATGCTGCAATAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTATTAGAAGATGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTATGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCAGTACACTTCCAAATTTATCCCCATGA

Coding sequence (CDS)

ATGAAGCTTTCTATTGCTTTCTTCTTTCTTCTTTCTCTTCTCTTGCTTGGAGATCATGCTGCAATAACCCATGGCAGAAGCAGGAAAGAAGAAGGAGAATATTGGAAAAAGATAATGAAAGAAGAAGCACTTCCTGAAATGCTTAAAGAGCTATTATTAGAAGATGATGATCCTTCTTCAATGGTGGAGTACAATAATAATAAGCAACAAAAAGAGCATTTTATGACCAACTTTGATCCTCATCCAAATGCTATAATTTATCATGCCCATGCCCATGCCCATAACAGTAACCCCAGTACACTTCCAAATTTATCCCCATGA

Protein sequence

MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSSMVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHNSNPSTLPNLSP*

Homology

[Close]

BLAST of Chy11G189710 vs. ExPASy TrEMBL
Match: A0A0A0LP62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.7e-46
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
           MKLSIAFFFLLSLLLLGD   +THGRSRKEEGEYWKKIMKEEALPEMLKELL+E DDPSS
Sbjct: 1   MKLSIAFFFLLSLLLLGD---LTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSS 60

Query: 61  MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHNSNPSTLPNLSP 107
           MVEYNNNKQQKEHF+TNFDPHPNAIIYHAHAHAHNSNP+ LPNLSP
Sbjct: 61  MVEYNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP 103

[Close]

BLAST of Chy11G189710 vs. ExPASy TrEMBL
Match: A0A6J1JGL9 (organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.6e-21
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
          MKLS+AFF LLSL+L  D   ++HG SRK++G+YWKK+MK E +PEMLKELL +D    S
Sbjct: 1  MKLSLAFFLLLSLVLFVD---VSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFDD----S 60

Query: 61 MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAH 95
          MVE      QK+ FM NFDPHPNAIIYHAHAHAH
Sbjct: 61 MVE-----NQKQRFMNNFDPHPNAIIYHAHAHAH 81

[Close]

BLAST of Chy11G189710 vs. ExPASy TrEMBL
Match: A0A6J1FYV4 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.6e-21
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
           MKLS+AFF L+SL+L  D   ++HG SRK++G+YWKK+MK E +PEMLKELL +D    S
Sbjct: 1   MKLSLAFFLLISLVLFVD---VSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFDD----S 60

Query: 61  MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHNSNPST 101
           MVE      QK+ FM NFDPHPNAIIYHAHAHAH    +T
Sbjct: 61  MVE-----NQKQRFMNNFDPHPNAIIYHAHAHAHGHGAAT 87

[Close]

BLAST of Chy11G189710 vs. ExPASy TrEMBL
Match: A0A6J1D5L4 (organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 53/92 (57.61%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1  MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
          MKLS+AFF LLSLLL  +      G  RK++GEYWKKIMKEE +PE+LKELL +D     
Sbjct: 1  MKLSVAFFLLLSLLLFAE-----GGYGRKDQGEYWKKIMKEEEIPEVLKELLYDDSVGG- 60

Query: 61 MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAH 93
                   Q E FM+NFDPHPNAIIYH+H+H
Sbjct: 61 ---------QNERFMSNFDPHPNAIIYHSHSH 77

[Close]

BLAST of Chy11G189710 vs. ExPASy TrEMBL
Match: A0A6J1G7K5 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-17
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 1  MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
          MKLS AFF L  +LL    A ++H  +RKE+GEYWKK+MK+EA+PEMLKELL +DD   S
Sbjct: 1  MKLSAAFFLLFLILL----ANVSH--ARKEKGEYWKKVMKDEAIPEMLKELLFDDD---S 60

Query: 61 MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHN 96
          +V   ++  Q EHFM NFD HPNAIIYH+H   H+
Sbjct: 61 LV---SSDAQSEHFMNNFDTHPNAIIYHSHGATHD 83

[Close]

BLAST of Chy11G189710 vs. NCBI nr
Match: XP_004148852.1 (uncharacterized protein LOC101213460 [Cucumis sativus] >KGN61786.1 hypothetical protein Csa_006572 [Cucumis sativus])

HSP 1 Score: 194 bits (492), Expect = 5.83e-62
Identity = 97/106 (91.51%), Postives = 101/106 (95.28%), Query Frame = 0


Query: 1   MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
           MKLSIAFFFLLSLLLLGD   +THGRSRKEEGEYWKKIMKEEALPEMLKELL+E DDPSS
Sbjct: 1   MKLSIAFFFLLSLLLLGD---LTHGRSRKEEGEYWKKIMKEEALPEMLKELLIEADDPSS 60

Query: 61  MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHNSNPSTLPNLSP 106
           MVEYNNNKQQKEHF+TNFDPHPNAIIYHAHAHAHNSNP+ LPNLSP
Sbjct: 61  MVEYNNNKQQKEHFLTNFDPHPNAIIYHAHAHAHNSNPTALPNLSP 103

[Close]

BLAST of Chy11G189710 vs. NCBI nr
Match: XP_038901980.1 (organ-specific protein P4 [Benincasa hispida])

HSP 1 Score: 116 bits (290), Expect = 3.45e-31
Identity = 74/113 (65.49%), Postives = 87/113 (76.99%), Query Frame = 0


Query: 1   MKLSIAFFFLL-SLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPS 60
           MKLS+AFF LL SLLL+G+   I+HG SRKEEGEYWKKIMK+E +P++LKE LL+D+   
Sbjct: 1   MKLSVAFFLLLLSLLLIGE---ISHG-SRKEEGEYWKKIMKDEEIPDILKESLLDDN--- 60

Query: 61  SMVEYNNNKQQKEHFMTNFDPHPNAIIYH-AHAHAHNSNPS-----TLPNLSP 106
           S+V+  NNK  KEHFMTNFDPHPNAIIYH AHA  HN+N       TLPN SP
Sbjct: 61  SLVD--NNK--KEHFMTNFDPHPNAIIYHTAHASTHNNNHHLKINPTLPNSSP 102

[Close]

BLAST of Chy11G189710 vs. NCBI nr
Match: KAG6571127.1 (hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010938.1 hypothetical protein SDJN02_27736, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110 bits (275), Expect = 7.19e-29
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
           MKLS+AFF LLSL+L  D   ++HG SRK++G+YWKK+MK E +PEMLKELL +D    S
Sbjct: 1   MKLSLAFFLLLSLVLFVD---VSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFDD----S 60

Query: 61  MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHNSNPST 100
           MVE      QK+ FM NFDPHPNAIIYHAHAHAH    +T
Sbjct: 61  MVE-----NQKQRFMNNFDPHPNAIIYHAHAHAHGHGAAT 87

[Close]

BLAST of Chy11G189710 vs. NCBI nr
Match: XP_022986644.1 (organ-specific protein S2-like [Cucurbita maxima])

HSP 1 Score: 110 bits (274), Expect = 1.08e-28
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
          MKLS+AFF LLSL+L  D   ++HG SRK++G+YWKK+MK E +PEMLKELL +D    S
Sbjct: 1  MKLSLAFFLLLSLVLFVD---VSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFDD----S 60

Query: 61 MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAH 94
          MVE      QK+ FM NFDPHPNAIIYHAHAHAH
Sbjct: 61 MVE-----NQKQRFMNNFDPHPNAIIYHAHAHAH 81

[Close]

BLAST of Chy11G189710 vs. NCBI nr
Match: XP_022944721.1 (organ-specific protein P4-like [Cucurbita moschata])

HSP 1 Score: 109 bits (273), Expect = 1.45e-28
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MKLSIAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSS 60
           MKLS+AFF L+SL+L  D   ++HG SRK++G+YWKK+MK E +PEMLKELL +D    S
Sbjct: 1   MKLSLAFFLLISLVLFVD---VSHG-SRKDQGKYWKKMMKNEEIPEMLKELLFDD----S 60

Query: 61  MVEYNNNKQQKEHFMTNFDPHPNAIIYHAHAHAHNSNPST 100
           MVE      QK+ FM NFDPHPNAIIYHAHAHAH    +T
Sbjct: 61  MVE-----NQKQRFMNNFDPHPNAIIYHAHAHAHGHGAAT 87

[Close]

BLAST of Chy11G189710 vs. TAIR 10
Match: AT1G49310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 8.5e-06
Identity = 33/84 (39.29%), Postives = 42/84 (50.00%), Query Frame = 0


Query: 5  IAFFFLLSLLLLGDHAAITHGRSRKEEGEYWKKIMKEEALPEMLKELLLEDDDPSSMVEY 64
          + F  LLS LL      ++ GR+     EYWKK+MK E LPE +KELL            
Sbjct: 9  VVFIVLLSFLLF---VNLSEGRTGGVAEEYWKKMMKNEPLPEPIKELL-----------N 68

Query: 65 NNNKQQKEHFMTNFDPHPNAIIYH 89
          N  +  +E F+ NFD     IIYH
Sbjct: 69 NPFRTAQERFIQNFDTKSVVIIYH 78

The following BLAST results are available for this feature:

BLAST of Chy11G189710 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G189710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LP62	1.7e-46	91.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1	[more]
A0A6J1JGL9	5.6e-21	64.89	organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 ...	[more]
A0A6J1FYV4	5.6e-21	61.00	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=...	[more]
A0A6J1D5L4	3.7e-17	57.61	organ-specific protein P4 OS=Momordica charantia OX=3673 GN=LOC111017249 PE=4 SV...	[more]
A0A6J1G7K5	3.7e-17	57.89	organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=...	[more]

BLAST of Chy11G189710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148852.1	5.83e-62	91.51	uncharacterized protein LOC101213460 [Cucumis sativus] >KGN61786.1 hypothetical ...	[more]
XP_038901980.1	3.45e-31	65.49	organ-specific protein P4 [Benincasa hispida]	[more]
KAG6571127.1	7.19e-29	62.00	hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022986644.1	1.08e-28	64.89	organ-specific protein S2-like [Cucurbita maxima]	[more]
XP_022944721.1	1.45e-28	61.00	organ-specific protein P4-like [Cucurbita moschata]	[more]

BLAST of Chy11G189710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49310.1	8.5e-06	39.29	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024489	Organ specific protein	PFAM	PF10950	Organ_specific	coord: 29..97 e-value: 8.7E-10 score: 39.3
None	No IPR available	PANTHER	PTHR33731:SF2	PROTEIN, PUTATIVE-RELATED	coord: 1..94
None	No IPR available	PANTHER	PTHR33731	PROTEIN, PUTATIVE-RELATED	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G189710.1	Chy11G189710.1	mRNA