Chy11G188780 (gene) Cucumber (hystrix) v1

Overview
NameChy11G188780
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionTransmembrane protein
LocationchrH11: 2731267 .. 2731696 (-)
RNA-Seq ExpressionChy11G188780
SyntenyChy11G188780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGCCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAACTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTATTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGGTGCGGCCGTGGTAGCGCGTGGTAACTGCTAAACCTAATTTAATTGAAAATTCGTTTCATCATATATACTTAATCGTTGTTTTAGTGTAAATTATAAAGAGGATGAGATTGTGATATATGGAATTGTGATGATCGTGTTGAAGGATTATGATCCATTGATGTGA

mRNA sequence

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGCCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAACTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTATTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGTGTAAATTATAAAGAGGATGAGATTGTGATATATGGAATTGTGATGATCGTGTTGAAGGATTATGATCCATTGATGTGA

Coding sequence (CDS)

ATGACTTACTGCTATGGATGTAAACCTCGCCCTTCCGGTCCTCTTCCCGGCCCTATCCTTCTGCTTCTCGCCGTGGTTTTCATCTTGATCGCCTTGTCCTCCCTTTTCCCCTCCGAACCAATCGACTTCTCCGAATTTCAAATCAACTGGCCTCTTCTCGCTGTTCCGATTATCATTCTTATTCTTGTTCGTTGTTTAGCATCCATGGATTCTTCACCCAGGTACTATGCTTGCCCTTGCGATCGTGGCTGGAAGATGCACTGTCGTGTAAATTATAAAGAGGATGAGATTGTGATATATGGAATTGTGATGATCGTGTTGAAGGATTATGATCCATTGATGTGA

Protein sequence

MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIILILVRCLASMDSSPRYYACPCDRGWKMHCRVNYKEDEIVIYGIVMIVLKDYDPLM*
Homology
BLAST of Chy11G188780 vs. ExPASy TrEMBL
Match: A0A0A0LJB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 2.0e-45
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 ILVRCLASMDSSPRYYACPCDRGWKMHCR 90
          +LVRCLASMDSSPRYYACPCDRGWKMHCR
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCR 89

BLAST of Chy11G188780 vs. ExPASy TrEMBL
Match: A0A5D3BJW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001670 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 8.6e-44
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 ILVRCLASMDSSPRYYACPCDRGWKMHCRVNY 93
          +LVRCL+SMDSSPRYYACPC+RGWKM+CR  +
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGH 92

BLAST of Chy11G188780 vs. ExPASy TrEMBL
Match: A0A2I0LDH6 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.3e-11
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 3  YCYGCK-PRPS-GPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK P PS GP+P  +LL L +  I IALS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LILVRCLASMDSSPRYYA-CPCDRGWKMHC 89
          L +V  L+S+D   ++Y   PC R WK  C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFC 94

BLAST of Chy11G188780 vs. ExPASy TrEMBL
Match: A0A1R3JDI7 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.2e-07
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 3  YCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLLAVPIIILI 62
          YC  C  RPS P+P  +LL LA+  +L+ALSSL   E  ++ +E  + W +L   + +L+
Sbjct: 10 YCGRCHRRPSSPMPYSVLLFLALALMLLALSSLIKFEIVLESAEDSMTWLVLLAVLALLV 69

Query: 63 LVRCLASMDSSPRYYACPCDR--GWK 86
          +VRCL+S DS  + + C C R   WK
Sbjct: 70 VVRCLSSTDSCRQPHYCGCGRCIKWK 95

BLAST of Chy11G188780 vs. ExPASy TrEMBL
Match: A0A6J1AFV4 (uncharacterized protein LOC110417586 OS=Herrania umbratica OX=108875 GN=LOC110417586 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.4e-07
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 3  YCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLLAVPIIILI 62
          YC  C+ RPS PLP  +LL LA+  +L+ALSSL   E  ++ +E  + W +L   + +L+
Sbjct: 10 YCGRCR-RPSSPLPYSVLLFLALALMLLALSSLIKFEIAMESAEDNMTWLVLLAALALLV 69

Query: 63 LVRCLASMDSSPRYYACPCDR--GWK 86
          LVR L+ MDS  R + C C R   WK
Sbjct: 70 LVRWLSPMDSCRRPHYCGCGRCTSWK 94

BLAST of Chy11G188780 vs. NCBI nr
Match: KGN61893.1 (hypothetical protein Csa_006600 [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 6.24e-60
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 ILVRCLASMDSSPRYYACPCDRGWKMHCR 89
          +LVRCLASMDSSPRYYACPCDRGWKMHCR
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCR 89

BLAST of Chy11G188780 vs. NCBI nr
Match: KAA0045689.1 (hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ99593.1 hypothetical protein E5676_scaffold123G001670 [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (466), Expect = 6.00e-58
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 ILVRCLASMDSSPRYYACPCDRGWKMHCRVNY 92
          +LVRCL+SMDSSPRYYACPC+RGWKM+CR  +
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGH 92

BLAST of Chy11G188780 vs. NCBI nr
Match: KAG6571042.1 (hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 174 bits (441), Expect = 3.78e-54
Identity = 79/89 (88.76%), Postives = 86/89 (96.63%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60

Query: 61 ILVRCLASMDSSPRYYACPCDRGWKMHCR 89
          +LVRCL+++DSS RYYACPC+RGWKM CR
Sbjct: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCR 89

BLAST of Chy11G188780 vs. NCBI nr
Match: KAG6605007.1 (hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152 bits (383), Expect = 3.68e-45
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 0

Query: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KP PSGPLPGPIL+LL VVFILI LSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGYKPHPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 ILVRCLASMDSSPRYYACPCDRGWKMHCRVNY 92
          +LVR L+S+DSS R+  C CDRGWKMHCR  +
Sbjct: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRH 90

BLAST of Chy11G188780 vs. NCBI nr
Match: PKI78722.1 (hypothetical protein CRG98_000947 [Punica granatum])

HSP 1 Score: 74.3 bits (181), Expect = 1.39e-14
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 0

Query: 3  YCYGCK-PRPS-GPLPGPILLLLAVVFILIALSSLFPSEPI-DFSEFQINWPLLAVPIII 62
          YCY CK P PS GP+P  +LL L +  I IALS L   + + +  E  INW LLAVPI+I
Sbjct: 5  YCYKCKHPPPSPGPMPHTVLLFLLITAIFIALSKLLAFDSLFEAPEININWGLLAVPIVI 64

Query: 63 LILVRCLASMDSSPRYYA-CPCDRGWKMHC 88
          L +V  L+S+D   ++Y   PC R WK  C
Sbjct: 65 LAIVHYLSSLDKPRKFYGPVPCGRCWKPFC 94

BLAST of Chy11G188780 vs. TAIR 10
Match: AT2G21185.1 (unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.1 bits (126), Expect = 1.7e-07
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = 0

Query: 4  CYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSE-PIDFSEFQINWPLL-AVPIIILI 63
          C  C+   S   P P+++++ V  +L+ALSS+   E  +   E  ++W LL AVP+ +L 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLASMDSSPR-YYACPCDRGWKMHC 89
           VRCL+ +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

BLAST of Chy11G188780 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.0e-05
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0

Query: 14 PLPGPILLLLAVVFILIALSSLFP-SEPIDFSEFQINWPLLAVPIIILILVRCLASMDS 72
          PLP P+LL+LAV  + +  S  F   E  + +E QIN+ LL +P+ +++LVR L+SM++
Sbjct: 18 PLPYPVLLILAVASVFLLSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJB62.0e-4598.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G263880 PE=4 SV=1[more]
A0A5D3BJW18.6e-4492.39Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2I0LDH67.3e-1147.78Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_000947 PE=4 SV=1[more]
A0A1R3JDI72.2e-0740.70Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_17251 PE=4 SV=1[more]
A0A6J1AFV48.4e-0743.02uncharacterized protein LOC110417586 OS=Herrania umbratica OX=108875 GN=LOC11041... [more]
Match NameE-valueIdentityDescription
KGN61893.16.24e-6098.88hypothetical protein Csa_006600 [Cucumis sativus][more]
KAA0045689.16.00e-5892.39hypothetical protein E6C27_scaffold243G002050 [Cucumis melo var. makuwa] >TYJ995... [more]
KAG6571042.13.78e-5488.76hypothetical protein SDJN03_29957, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605007.13.68e-4580.43hypothetical protein SDJN03_02324, partial [Cucurbita argyrosperma subsp. sorori... [more]
PKI78722.11.39e-1447.78hypothetical protein CRG98_000947 [Punica granatum][more]
Match NameE-valueIdentityDescription
AT2G21185.11.7e-0737.50unknown protein; Has 9 Blast hits to 9 proteins in 4 species: Archae - 0; Bacter... [more]
AT2G21180.12.0e-0542.37unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33306EXPRESSED PROTEIN-RELATED-RELATEDcoord: 1..91
NoneNo IPR availablePANTHERPTHR33306:SF32SUBFAMILY NOT NAMEDcoord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy11G188780.1Chy11G188780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane