Chy11G188500 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G188500
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 2497818 .. 2498952 (-)
RNA-Seq Expression	Chy11G188500
Synteny	Chy11G188500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAACCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCATCGTTTCTTTTTAACTATTTTCCAGAACAGAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACCATGGAAAGGAAAAGCGCTTCTAACCAATTTCTTATTAAGTGGAAAAAAGACTTTGTAAAGAACATAAACTATAAGAATGGAGATGAAATTTTGTTGTATTGGGAACCTCAGATCAAAAGTCTATGTTTTGAGATTGTAAAGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAATACCGTTCATATAACTATCGTACCTAGAACAAATCTAGCACATTAAAATAATAATAATAATTAAACTTTATATGTGTAAGTGTAATACAAAGGTTGTTATATTGCTCTTGAAGTTAAAAAACTATTTTGGTACAAGTTGTTCAATTTTAGGGTTTTAGGTCACAAATTTTGTAAAATTGTTATCTTTTAGCACTTTAATTTATTTAAAATTTGAAAAAATATAATTTTTTTTCATGAAAATTAATATAATTTTCAATCAATTTCAATAGTAAAAAAAATTAACTTTGTGTAAATTTAAGATTTATTGAAATTAAAAAGACTAAATTTGGACAAAGTAAGTTTTAAGATTTTAACCTAAAAAAAAAAAAATTGAAATAAAAAAAAAACTTAGTTAAACTAATAAAATGAACCTTTTAAGTTTTAATTTAATGTACAATATATAAAATTGGCCATTTGAAAAATAAAGCAATAAGAATACAGCAAATTTACCATTTTTAAGAAATTTAAATAATTATGGTCAAATGTTTTTTTAATGATAAAATGAACCAAACTAAATTAAAGATTTTCTAATATTTATACTACATTTCAAAGTCCATTTATTTAAAGATTTCATTCCTTTAATAATATGTGTGAATGTATGACTAAGTTAGACTCAAATTTAAAAACATTCGACATGTTACGAGAGGGTTTATGATATCTTGTTTGGCTAATATATATTGAAATCGAAGATGATGATGTGAAATTAAAATTTATACACAAGAAGTAA

mRNA sequence

ATGGAGCAACCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCATCGTTTCTTTTTAACTATTTTCCAGAACAGAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACCATGGAAAGGAAAAGCGCTTCTAACCAATTTCTTATTAAGTGGAAAAAAGACTTTGTAAAGAACATAAACTATAAGAATGGAGATGAAATTTTGTTGTATTGGGAACCTCAGATCAAAAGTCTATGTTTTGAGATTGTAAAGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGATGATGATGTGAAATTAAAATTTATACACAAGAAGTAA

Coding sequence (CDS)

ATGGAGCAACCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCATCGTTTCTTTTTAACTATTTTCCAGAACAGAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACCATGGAAAGGAAAAGCGCTTCTAACCAATTTCTTATTAAGTGGAAAAAAGACTTTGTAAAGAACATAAACTATAAGAATGGAGATGAAATTTTGTTGTATTGGGAACCTCAGATCAAAAGTCTATGTTTTGAGATTGTAAAGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGATGATGATGTGAAATTAAAATTTATACACAAGAAGTAA

Protein sequence

MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLFNYFPEQSGKAKITMFDVVSEKSFKATMERKSASNQFLIKWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSDDDVKLKFIHKK*

Homology

[Close]

BLAST of Chy11G188500 vs. ExPASy TrEMBL
Match: A0A0A0LJ50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.3e-61
Identity = 119/121 (98.35%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLFNYFPEQSGKAKITMFDVVSEKSF 60
           MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFL NYFPEQSGKAKITMFDVVSEKSF
Sbjct: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSASNQFLIKWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120
           KATMERKSASNQFLI WKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]

BLAST of Chy11G188500 vs. ExPASy TrEMBL
Match: A0A0A0LD04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 3.8e-59
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLFNYFPEQSGKAKITMFDVVSEKSF 60
           MEQ KKPWSITETLDGSKELGLKLDAAEMLFESSFL NYFPEQSGKAKITMFDVVSEKSF
Sbjct: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSASNQFLIKWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120
           KATMERKSASNQFLI WKKDFVKNINYK+GDEILLYWEPQIKSLCFEIV+CSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120

Query: 121 S 122
           S
Sbjct: 121 S 121

[Close]

BLAST of Chy11G188500 vs. NCBI nr
Match: KAE8651896.1 (hypothetical protein Csa_006487 [Cucumis sativus])

HSP 1 Score: 241 bits (614), Expect = 1.08e-79
Identity = 118/121 (97.52%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLFNYFPEQSGKAKITMFDVVSEKSF 60
           MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFL NYFPEQ+GKAKITMFDVVSEKSF
Sbjct: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQTGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSASNQFLIKWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120
           KATMERKSASNQFLI WKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120

[Close]

BLAST of Chy11G188500 vs. NCBI nr
Match: KAE8651895.1 (hypothetical protein Csa_006112 [Cucumis sativus])

HSP 1 Score: 236 bits (601), Expect = 1.04e-77
Identity = 116/121 (95.87%), Postives = 118/121 (97.52%), Query Frame = 0


Query: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLFNYFPEQSGKAKITMFDVVSEKSF 60
           MEQ KKPWSITETLDGSKELGLKLDAAEMLFESSFL NYFPEQSGKAKITMFDVVSEKSF
Sbjct: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSASNQFLIKWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120
           KATMERKSASNQFLI WKKDFVKNINYK+GDEILLYWEPQIKSLCFEIV+CSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120

[Close]

BLAST of Chy11G188500 vs. NCBI nr
Match: BAO96245.1 (E1 protein [Lotus japonicus])

HSP 1 Score: 49.7 bits (117), Expect = 3.83e-04
Identity = 41/133 (30.83%), Postives = 68/133 (51.13%), Query Frame = 0


Query: 7   PWSITETLDGSKELGL--KLDAAEMLFESSFLFNYFPEQSGKAK------ITMFDVVSEK 66
           PW I +TL  S +LG+  +L  A  L +   L      Q+  A+      + ++DV +E 
Sbjct: 50  PWKIKKTLMAS-DLGILSRLMLAADLVKKQILPMLGVHQARAAETEQGSQVRVWDVDTES 109

Query: 67  SFKATMERKSASNQFLI--KWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCS-ALR 126
             +  ++R S+S  +++  KW +DFV+    K GDEI  YW+P   +  F ++K + +L 
Sbjct: 110 MHQLVLKRWSSSKSYVLIGKWSQDFVRRRELKKGDEIGFYWDPYNCAFNFCVLKLARSLG 169

Query: 127 TYPQMSDDDVKLK 128
               MS DD  +K
Sbjct: 170 LDHLMSHDDTIVK 181

[Close]

BLAST of Chy11G188500 vs. NCBI nr
Match: BAO58280.1 (E1 protein [Lotus japonicus] >BAO58281.1 E1 protein [Lotus japonicus] >BAO58282.1 E1 protein [Lotus japonicus])

HSP 1 Score: 49.3 bits (116), Expect = 5.30e-04
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 7   PWSITETLDGSKELGL--KLDAAEMLFESSFLFNYFPEQSGKAK------ITMFDVVSEK 66
           PW I +TL  S +LG+  +L  A  L +   L      Q+  A+      + ++DV +E 
Sbjct: 50  PWKIKKTLMAS-DLGILNRLMLAADLVKKQILPMLGVHQARAAETEQGSQVRVWDVDTES 109

Query: 67  SFKATMERKSASNQFLI--KWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVK-CSALR 126
             +  ++R S+S  +++  KW +DFV+    K GDEI  YW+P   +  F ++K   +L 
Sbjct: 110 MHQLVLKRWSSSKSYVLIGKWSQDFVRRRELKKGDEIGFYWDPYNCAFNFCVLKRARSLG 169

Query: 127 TYPQMSDDDVKLK 128
               MS DD  +K
Sbjct: 170 LDHLMSHDDTIVK 181

[Close]

BLAST of Chy11G188500 vs. NCBI nr
Match: BAO58277.1 (E1 protein [Lotus japonicus] >BAO58278.1 E1 protein [Lotus japonicus] >BAO58285.1 E1 protein [Lotus japonicus])

HSP 1 Score: 49.3 bits (116), Expect = 5.30e-04
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 0


Query: 7   PWSITETLDGSKELGL--KLDAAEMLFESSFLFNYFPEQSGKAK------ITMFDVVSEK 66
           PW I +TL  S +LG+  +L  A  L +   L      Q+  A+      + ++DV +E 
Sbjct: 50  PWKIKKTLMAS-DLGILSRLMLAADLVKKQILPMLGVHQARAAETEQGSQVRVWDVDTES 109

Query: 67  SFKATMERKSASNQFLI--KWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVK-CSALR 126
             +  ++R S+S  +++  KW +DFV+    K GDEI  YW+P   +  F ++K   +L 
Sbjct: 110 MHQLVLKRWSSSKSYVLIGKWSQDFVRRRELKKGDEIGFYWDPYNCAFNFCVLKRARSLG 169

Query: 127 TYPQMSDDDVKLK 128
               MS DD  +K
Sbjct: 170 LDHLMSHDDTIVK 181

The following BLAST results are available for this feature:

BLAST of Chy11G188500 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G188500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ50	5.3e-61	98.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1	[more]
A0A0A0LD04	3.8e-59	95.87	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1	[more]

BLAST of Chy11G188500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651896.1	1.08e-79	97.52	hypothetical protein Csa_006487 [Cucumis sativus]	[more]
KAE8651895.1	1.04e-77	95.87	hypothetical protein Csa_006112 [Cucumis sativus]	[more]
BAO96245.1	3.83e-04	30.83	E1 protein [Lotus japonicus]	[more]
BAO58280.1	5.30e-04	30.83	E1 protein [Lotus japonicus] >BAO58281.1 E1 protein [Lotus japonicus] >BAO58282....	[more]
BAO58277.1	5.30e-04	30.83	E1 protein [Lotus japonicus] >BAO58278.1 E1 protein [Lotus japonicus] >BAO58285....	[more]

BLAST of Chy11G188500 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 18..123 e-value: 1.1E-6 score: 30.4

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G188500.1	Chy11G188500.1	mRNA