Chy11G187660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G187660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	60S ribosomal protein L26, putative
Location	chrH11: 1855454 .. 1856188 (+)
RNA-Seq Expression	Chy11G187660
Synteny	Chy11G187660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGCAAGGCACACTTCTCCGCGCCGTCGAGTGTACGGCGGATTTTGATGAGTGCGACCCTCTCCGGCGACCTTCGTTCCAAGTACAATGTCCGCTCCATGCCGATCCGGAAGGACGACGAAGTTCAGGTCTTGAGAGGAACTTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAAGTGAATGGCTCCACTGTTAATGTTGGAATTAAGCCGTCGAAGGTTATGATTACGAAGCTCAAGTTGGATAAGGATAGGAAGTCGTTGCTTGATCGTAAGGCTAAGGGTCGCGCTTCTGCAGATAAGGATAAGGGTACTAAATTCACTGCTGAGGATATTATGCAAAGCGTCGACTAATTTTAATCTGGTGAAAAATTTTGAAATTTCCTCTTAGTTTTAGTTCTTACTCTGTTTTGATTTGCTTTCAAACTTGAGGTTTTGTCTTTATTTGTTCTGGAATGAGGAGACAATGTTTTATTGTTTTTTAATTTTGATGCTTCGAGTTCTGCCTTTGCTCTCAATACCTGGATTTTTTTGTTATTTTTCAATGCAATATCATAAGATTCCTTTCTTAATATCTCTGTTCTTGTCCTTTGAATGAAGAATTGATCTTGATTTAGTTTCTGGGCGACAGGCATTGTTGTTGATTGA

mRNA sequence

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGCAAGGCACACTTCTCCGCGCCGTCGAGTGTACGGCGGATTTTGATGAGTGCGACCCTCTCCGGCGACCTTCGTTCCAAGTACAATGTCCGCTCCATGCCGATCCGGAAGGACGACGAAGTTCAGGTCTTGAGAGGAACTTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAAGTGAATGGCTCCACTGTTAATGTTGGAATTAAGCCGTCGAAGGTTATGATTACGAAGCTCAAGTTGGATAAGGATAGGAAGTCGTTGCTTGATCGTAAGGCTAAGGGTCGCGCTTCTGCAGATAAGGATAAGGGCATTGTTGTTGATTGA

Coding sequence (CDS)

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGCAAGGCACACTTCTCCGCGCCGTCGAGTGTACGGCGGATTTTGATGAGTGCGACCCTCTCCGGCGACCTTCGTTCCAAGTACAATGTCCGCTCCATGCCGATCCGGAAGGACGACGAAGTTCAGGTCTTGAGAGGAACTTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAAGTGAATGGCTCCACTGTTAATGTTGGAATTAAGCCGTCGAAGGTTATGATTACGAAGCTCAAGTTGGATAAGGATAGGAAGTCGTTGCTTGATCGTAAGGCTAAGGGTCGCGCTTCTGCAGATAAGGATAAGGGCATTGTTGTTGATTGA

Protein sequence

MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDRKAKGRASADKDKGIVVD*

Homology

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BLAST of Chy11G187660 vs. ExPASy Swiss-Prot
Match: P51414 (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 226.1 bits (575), Expect = 2.4e-58
Identity = 113/133 (84.96%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+ LS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKG 134
           KAKGRA+ADK+KG
Sbjct: 121 KAKGRAAADKEKG 133

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BLAST of Chy11G187660 vs. ExPASy Swiss-Prot
Match: Q9FJX2 (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.1e-57
Identity = 112/133 (84.21%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+ LS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKG 134
           KA GRA+ADK+KG
Sbjct: 121 KANGRAAADKEKG 133

[Close]

BLAST of Chy11G187660 vs. ExPASy Swiss-Prot
Match: Q39411 (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 6.2e-54
Identity = 105/133 (78.95%), Postives = 123/133 (92.48%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HF+A SS RR+ MS+ LS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKG 134
           KAKGRA+ADKDKG
Sbjct: 121 KAKGRAAADKDKG 133

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BLAST of Chy11G187660 vs. ExPASy Swiss-Prot
Match: P12749 (60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-43
Identity = 92/134 (68.66%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+ LS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKG 134
           RKAK R    K+KG
Sbjct: 121 RKAKSR-QVGKEKG 133

[Close]

BLAST of Chy11G187660 vs. ExPASy Swiss-Prot
Match: Q9UNX3 (60S ribosomal protein L26-like 1 OS=Homo sapiens OX=9606 GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.2e-43
Identity = 93/134 (69.40%), Postives = 114/134 (85.07%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS VRR +MS+ LS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKG 134
           RKAK R    K+KG
Sbjct: 121 RKAKSR-QVGKEKG 133

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BLAST of Chy11G187660 vs. ExPASy TrEMBL
Match: A0A0A0LJI3 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285350 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.4e-64
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 134
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. ExPASy TrEMBL
Match: A0A5A7TS06 (60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00090 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 134
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. ExPASy TrEMBL
Match: A0A1S3C7Q4 (60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.2e-63
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 134
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. ExPASy TrEMBL
Match: A0A6J1D6T1 (60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.7e-62
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSA LSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 134
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. ExPASy TrEMBL
Match: A0A6J1L4P7 (60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.9e-62
Identity = 126/133 (94.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 134
           KAKGRAS+DKDKG
Sbjct: 121 KAKGRASSDKDKG 133

[Close]

BLAST of Chy11G187660 vs. NCBI nr
Match: XP_004148028.1 (60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein Csa_006447 [Cucumis sativus])

HSP 1 Score: 251 bits (642), Expect = 1.13e-83
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 133
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. NCBI nr
Match: XP_008457837.1 (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S ribosomal protein L26-1-like [Benincasa hispida] >KAA0045834.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa] >TYJ99449.1 60S ribosomal protein L26-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 249 bits (636), Expect = 9.29e-83
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 133
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. NCBI nr
Match: XP_022149443.1 (60S ribosomal protein L26-1-like [Momordica charantia])

HSP 1 Score: 245 bits (626), Expect = 3.11e-81
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSA LSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 133
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. NCBI nr
Match: XP_022948229.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023532418.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6605230.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035196.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 244 bits (622), Expect = 1.27e-80
Identity = 126/133 (94.74%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 133
           KAKGRAS+DKDKG
Sbjct: 121 KAKGRASSDKDKG 133

[Close]

BLAST of Chy11G187660 vs. NCBI nr
Match: XP_022931741.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023521000.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo] >KAG6571308.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019317.1 60S ribosomal protein L26-1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243 bits (621), Expect = 1.80e-80
Identity = 128/133 (96.24%), Postives = 131/133 (98.50%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR+LMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGI PSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKG 133
           KAKGRASADKDKG
Sbjct: 121 KAKGRASADKDKG 133

[Close]

BLAST of Chy11G187660 vs. TAIR 10
Match: AT3G49910.1 (Translation protein SH3-like family protein )

HSP 1 Score: 226.1 bits (575), Expect = 1.7e-59
Identity = 113/133 (84.96%), Postives = 128/133 (96.24%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+ LS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKG 134
           KAKGRA+ADK+KG
Sbjct: 121 KAKGRAAADKEKG 133

[Close]

BLAST of Chy11G187660 vs. TAIR 10
Match: AT5G67510.1 (Translation protein SH3-like family protein )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 112/133 (84.21%), Postives = 127/133 (95.49%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+ LS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKG 134
           KA GRA+ADK+KG
Sbjct: 121 KANGRAAADKEKG 133

The following BLAST results are available for this feature:

BLAST of Chy11G187660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51414	2.4e-58	84.96	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
Q9FJX2	2.1e-57	84.21	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
Q39411	6.2e-54	78.95	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
P12749	1.3e-43	68.66	60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1	[more]
Q9UNX3	2.2e-43	69.40	60S ribosomal protein L26-like 1 OS=Homo sapiens OX=9606 GN=RPL26L1 PE=1 SV=1	[more]

BLAST of Chy11G187660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJI3	2.4e-64	100.00	KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G285350 PE=3 SV...	[more]
A0A5A7TS06	1.2e-63	99.25	60S ribosomal protein L26-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C7Q4	1.2e-63	99.25	60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV...	[more]
A0A6J1D6T1	1.7e-62	96.24	60S ribosomal protein L26-1-like OS=Momordica charantia OX=3673 GN=LOC111017871 ...	[more]
A0A6J1L4P7	4.9e-62	94.74	60S ribosomal protein L26-1-like OS=Cucurbita maxima OX=3661 GN=LOC111499871 PE=...	[more]

BLAST of Chy11G187660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148028.1	1.13e-83	100.00	60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein C...	[more]
XP_008457837.1	9.29e-83	99.25	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo] >XP_038900627.1 60S r...	[more]
XP_022149443.1	3.11e-81	96.24	60S ribosomal protein L26-1-like [Momordica charantia]	[more]
XP_022948229.1	1.27e-80	94.74	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S riboso...	[more]
XP_022931741.1	1.80e-80	96.24	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S riboso...	[more]

BLAST of Chy11G187660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49910.1	1.7e-59	84.96	Translation protein SH3-like family protein	[more]
AT5G67510.1	1.5e-58	84.21	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 4.9E-6 score: 36.1
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 7.9E-10 score: 38.3
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 1.1E-37 score: 128.7
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 4.0E-51 score: 170.2
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..134
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..135 e-value: 1.1E-55 score: 189.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11143:SF15	60S RIBOSOMAL PROTEIN L26-1-LIKE	coord: 1..134
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 2.02045E-14 score: 61.3766
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 8..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G187660.1	Chy11G187660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome