Chy11G186690 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G186690
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 1003913 .. 1004199 (-)
RNA-Seq Expression	Chy11G186690
Synteny	Chy11G186690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTGGCCTTCATCTTTTTCTTTTTTCTTCTCATCACAACCACAGGTATTGCTTGTTGTTATTGCTTGTTTATTTCCCTCTTCAATTATTTTTGAGGAATTGAACAGTAACTTATTGTTATTGCTTGTTGTACGTTTTAGGTTCTTCAGCAAGAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGATGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAATGACTTGGTGACGATGGACTATACTCCGGCGAGGAAGAACCATCCAATCCATAACTAG

mRNA sequence

CTATTGGCCTTCATCTTTTTCTTTTTTCTTCTCATCACAACCACAGGTTCTTCAGCAAGAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGATGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAATGACTTGGTGACGATGGACTATACTCCGGCGAGGAAGAACCATCCAATCCATAACTAG

Coding sequence (CDS)

CTATTGGCCTTCATCTTTTTCTTTTTTCTTCTCATCACAACCACAGGTTCTTCAGCAAGAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGATGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAATGACTTGGTGACGATGGACTATACTCCGGCGAGGAAGAACCATCCAATCCATAACTAG

Protein sequence

LLAFIFFFFLLITTTGSSARRSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHPIHN*

Homology

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BLAST of Chy11G186690 vs. ExPASy TrEMBL
Match: A0A0A0LM46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.5e-24
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  LLAFIFFFFLLITTTGSSARRSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP 60
          LLAFIF FFLLITTTGSSA RSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP
Sbjct: 17 LLAFIFLFFLLITTTGSSA-RSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP 76

Query: 61 IHN 64
          IHN
Sbjct: 77 IHN 78

[Close]

BLAST of Chy11G186690 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_006414 [Cucumis sativus])

HSP 1 Score: 119 bits (298), Expect = 1.82e-33
Identity = 61/63 (96.83%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 1  LLAFIFFFFLLITTTGSSARRSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP 60
          LLAFIF FFLLITTTGSSAR SLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP
Sbjct: 17 LLAFIFLFFLLITTTGSSAR-SLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP 76

Query: 61 IHN 63
          IHN
Sbjct: 77 IHN 78

[Close]

BLAST of Chy11G186690 vs. NCBI nr
Match: KAG6571378.1 (hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 2.38e-20
Identity = 40/63 (63.49%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  LLAFIFFFFLLITTTGSSARRSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHP 60
          LL FIF FFLL+T TGSS  R L+EG SR +++P V+NH GV+GNDLVTM YT A+ N P
Sbjct: 16 LLLFIFLFFLLVTATGSSGGRRLIEGTSRTEENPLVENHDGVLGNDLVTMHYTSAKSNRP 75

Query: 61 IHN 63
          +HN
Sbjct: 76 VHN 78

[Close]

BLAST of Chy11G186690 vs. NCBI nr
Match: KAG6605285.1 (hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.5 bits (153), Expect = 2.42e-11
Identity = 35/65 (53.85%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1  LLAFIFFFFLLITTTGSSARRSLVEGRSRNDDDPYVKNHSGVI--GNDLVTMDYTPARKN 60
          LL+ +F F LLITTTGS   R+L+E    +++DP      G +   NDLVTMDYTPA KN
Sbjct: 16 LLSLLFLFILLITTTGSLGGRTLLEKTGHSEEDPLDIVRGGGLENANDLVTMDYTPATKN 75

Query: 61 HPIHN 63
           PIHN
Sbjct: 76 RPIHN 80

[Close]

BLAST of Chy11G186690 vs. NCBI nr
Match: KAG6605284.1 (hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 47.4 bits (111), Expect = 6.27e-05
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 1  LLAFIFFFFLLITTTGSSARRSLVEGRSRNDDDPYVK-NHSGVIGN--DLVTMDYTPARK 60
          LL  +F F LL+TT GS    SL+E    +++D     +H G + N  DL  MDYTPA  
Sbjct: 16 LLPLLFLFILLVTTPGSFGAPSLLEKTRHSEEDQLATISHGGALENAYDLGAMDYTPAGP 75

Query: 61 NHPIHN 63
          + P+HN
Sbjct: 76 SPPVHN 81

[Close]

BLAST of Chy11G186690 vs. NCBI nr
Match: QHO02460.1 (Root meristem growth factor [Arachis hypogaea])

HSP 1 Score: 46.6 bits (109), Expect = 1.10e-04
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 3  AFIFFFFLLITTTGSSARR------SLVEGRSRNDDDPYVKNHSG---VIGNDLVTMDYT 62
          AF+   F+ +T  G S R        + +G   +  + + +NH G   +I  D+ TMDYT
Sbjct: 9  AFLLLCFMSMTARGRSLREIATNKNGVDDGEKGHQSNVFKRNHEGTQEIISGDIDTMDYT 68

The following BLAST results are available for this feature:

BLAST of Chy11G186690 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G186690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM46	2.5e-24	96.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1	[more]

BLAST of Chy11G186690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62099.1	1.82e-33	96.83	hypothetical protein Csa_006414 [Cucumis sativus]	[more]
KAG6571378.1	2.38e-20	63.49	hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605285.1	2.42e-11	53.85	hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605284.1	6.27e-05	42.42	hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sorori...	[more]
QHO02460.1	1.10e-04	37.14	Root meristem growth factor [Arachis hypogaea]	[more]

BLAST of Chy11G186690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 1..63
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G186690.1	Chy11G186690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity