Chy11G186660 (gene) Cucumber (hystrix) v1

Overview


Name	Chy11G186660
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Root meristem growth factor 9-like protein
Location	chrH11: 979327 .. 980662 (-)
RNA-Seq Expression	Chy11G186660
Synteny	Chy11G186660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGCTTCCATGCAAACGCATTCTTATACTCTTCGTCCTCATCTTCGTCCTTCTTTGTTGTTTCTCAAACACAGCTATAGGTATAGACTTTTCTATCTAATGATGTCTTTTCTTTTTCTCTTCATTTTTATGTTTTAGGTTATGGGTTAAACAAAAAAACACATGTTAACTAATTGATTACGACAATTCATATTTGTTTATTTATTTCTTCTCCCTAGTTTTGTTTTGAGTTTAAAAATTAGGTCATACTATCAAATTTTGAGTTATGATCATAAACTGAAATATATTTTACCTTATAGAAGATGAGAATTTTTAATTTTCTTCATGGTACAATATTTTGATCAATTATACATGCATGTATAAGGTTCATGGTATATATAATTTATTTTTTGATGTATTTTGGAAGGTTTGTGCCAAACATAGATACATTCAAACATGACAACATATATGTTTCTTGATGATTATTTTGTAAGTTTAATGAGACTATGGAAGTATCTCTTACCAAACGAGAAATATATATATTATATACAAATACATTTGTTTAAGAAATTAAAATATTGACTTATTTTTATAATCTACTTTTATAAATAGTATTTCAAAAAGAAGTTTTTCTAACCAGAAAAAGAAAACAAAAAGAACAAGAAATTAAAGTTGTTTCTAGACATATTTTTAATGTTCTTTTGAATGAAGAATTTCGAATGACTTCCAAGTATGTCTCTTATTGCAAGAAAGAGAATAGTTTTTAAAAAAATTTGTTTTGAAAAAAAAAACTTACTAAAATGATCGGATTTCAAATATTTTATAAGATTTAAGGTAGAATAGTTTCAAAGAAAATATTGTGTTTTTCGTTTCTTTTCCAGTTAACGTTAGAATTTAGAAGCAAAAAATTTAAATACATTTATTCCAAATCTTTTCCATTCTAAACGGGATAACTCCGAGCTAAACATATTTCAAAACCACAGGAAAAGAAAACCTATATGTACAGTTGAATAAGTTCAATTCTATACCAAAACCATAAAATAAAAAACTCATTCTACAAAGTTTTCCTCGGTCTCTCTTTGGCAACCCAAATTTTATGTACAAATTGAAGTTGGACTGAGATTGTTACTGATGGGATTTACTTAATTATTGATTTGTTTGGGATTGCAGCTGCAAGAAGTGTGGGAGTTGCTGTGATGAAAAATGAGAGTCAAAATGAGAAAGTAATTAACATCAATGATGATGCTTATAAAGTTCATAATAATGATGAAGAACATTATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCGATTCACAACTAG

mRNA sequence

ATGGCTATGCTTCCATGCAAACGCATTCTTATACTCTTCGTCCTCATCTTCGTCCTTCTTTGTTGTTTCTCAAACACAGCTATAGCTGCAAGAAGTGTGGGAGTTGCTGTGATGAAAAATGAGAGTCAAAATGAGAAAGTAATTAACATCAATGATGATGCTTATAAAGTTCATAATAATGATGAAGAACATTATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCGATTCACAACTAG

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATTCTTATACTCTTCGTCCTCATCTTCGTCCTTCTTTGTTGTTTCTCAAACACAGCTATAGCTGCAAGAAGTGTGGGAGTTGCTGTGATGAAAAATGAGAGTCAAAATGAGAAAGTAATTAACATCAATGATGATGCTTATAAAGTTCATAATAATGATGAAGAACATTATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCGATTCACAACTAG

Protein sequence

MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNNDEEHYFSSTDDLGAMDYTPASKKPPIHN*

Homology

[Close]

BLAST of Chy11G186660 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNN 60
          MAMLPCKRIL LFVLI VLLCCFSN AIAARSVGVA MKNESQNEKVIN+NDDAYKVHNN
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          DEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of Chy11G186660 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNE-SQNEKVININDDAYKVH- 60
          MAMLPCKRILILF+LI +LL CFSNTAIAARSVGVA MKNE SQ EKVININDD  KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of Chy11G186660 vs. ExPASy TrEMBL
Match: A0A5N6QFX6 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002787 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 0


Query: 1  MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNN 60
          MA +PCKR   LF++ F++LC FS  A AAR +       E+ NE  I  +D +    + 
Sbjct: 1  MAAVPCKR---LFLVAFLILCFFSIQATAARRL------REAGNESQIGHDDPS----SP 60

Query: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 89
           EE    S D+  A DYTPA +KPPIHN
Sbjct: 61 KEERMLESADEFVAADYTPARRKPPIHN 75

[Close]

BLAST of Chy11G186660 vs. ExPASy TrEMBL
Match: A0A6A1VC82 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 2  AMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNND 61
          A+LPCKR+++   +  V+LC FSN A AARS+  AV  NE      ++ + D +   +  
Sbjct: 4  AVLPCKRLVL---IALVMLCFFSNAARAARSLR-AVASNEISQ---MSHDQDPF---SPK 63

Query: 62 EEHYFSSTDDLGAMDYTPASKKPPIHN 89
          E+   + +DDL  +DYTPA +KPPIHN
Sbjct: 64 EDRVLADSDDLVTVDYTPARRKPPIHN 80

[Close]

BLAST of Chy11G186660 vs. ExPASy TrEMBL
Match: A0A314YKW1 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_08970 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.7e-04
Identity = 39/89 (43.82%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 1  MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNN 60
          MA +P K +L+   + F+LLC  S TA   RS+GV     +  ++K  +++ D +K    
Sbjct: 1  MAAIPFKHLLL---VAFILLCFISITA-EGRSLGVVSKSADDGHQKSHDLH-DPFKQKEE 60

Query: 61 DEEHYFS-STDDLGAMDYTPASKKPPIHN 89
          D E   S  ++DL AMDYTPASKKPPIHN
Sbjct: 61 DHEGLLSDESNDLLAMDYTPASKKPPIHN 84

[Close]

BLAST of Chy11G186660 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 4.64e-49
Identity = 83/88 (94.32%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNN 60
          MAMLPCKRIL LFVLI VLLCCFSN AIAARSVGVA MKNESQNEKVIN+NDDAYKVHNN
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88
          DEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of Chy11G186660 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 1.79e-42
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNE-SQNEKVININDDAYKVHN 60
          MAMLPCKRILILF+LI +LL CFSNTAIAARSVGVA MKNE SQ EKVININDD  KVHN
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 N-DEEHYFSSTDDLGAMDYTPASKKPPIHN 88
          N DEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of Chy11G186660 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 2.74e-16
Identity = 48/82 (58.54%), Postives = 55/82 (67.07%), Query Frame = 0


Query: 7  KRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNNDEEHYF 66
          KR+L   VL+ VLLC FSN  IA RS+GV  +K +    K     +D   VH   EE +F
Sbjct: 5  KRVL---VLVLVLLCSFSNKVIATRSLGVPQIKKDDHKLK----GNDDLAVH---EEEHF 64

Query: 67 SSTDDLGAMDYTPASKKPPIHN 88
          SSTDDLGAMDYTPASKKPPIHN
Sbjct: 65 SSTDDLGAMDYTPASKKPPIHN 76

[Close]

BLAST of Chy11G186660 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 73.9 bits (180), Expect = 5.14e-15
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 0


Query: 3  MLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVH---N 62
          M PCKR++++ +++ VLL CFSNTAI ARS+GV V +        I  +D + KV    N
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQ--------IKKDDHSLKVDGDLN 60

Query: 63 NDEEHYFSSTDDLGAMDYTPASKKPPIHN 88
           D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 61 VDDEEHFMSTVDLVAMDYTQASKKPPIHN 81

[Close]

BLAST of Chy11G186660 vs. NCBI nr
Match: KAB1210353.1 (hypothetical protein CJ030_MR6G024140 [Morella rubra])

HSP 1 Score: 53.1 bits (126), Expect = 7.64e-07
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 2  AMLPCKRILILFVLIFVLLCCFSNTAIAARSVGVAVMKNESQNEKVININDDAYKVHNND 61
          A+LPCKR   L ++  V+LC FSN A AARS+        SQ    ++ + D +      
Sbjct: 4  AVLPCKR---LVLIALVMLCFFSNAARAARSLRAVASNEISQ----MSHDQDPFSPK--- 63

Query: 62 EEHYFSSTDDLGAMDYTPASKKPPIHN 88
          E+   + +DDL  +DYTPA +KPPIHN
Sbjct: 64 EDRVLADSDDLVTVDYTPARRKPPIHN 80

The following BLAST results are available for this feature:

BLAST of Chy11G186660 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G186660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMV6	1.3e-36	94.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1	[more]
A0A5A7TWX6	1.3e-31	88.89	Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5N6QFX6	3.9e-04	43.18	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_002787 PE=4 SV=1	[more]
A0A6A1VC82	5.2e-04	42.53	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1	[more]
A0A314YKW1	6.7e-04	43.82	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_089...	[more]

BLAST of Chy11G186660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62102.1	4.64e-49	94.32	hypothetical protein Csa_006036 [Cucumis sativus]	[more]
KAA0045905.1	1.79e-42	88.89	Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684...	[more]
KAG6571377.1	2.74e-16	58.54	hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605281.1	5.14e-15	52.81	hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB1210353.1	7.64e-07	41.38	hypothetical protein CJ030_MR6G024140 [Morella rubra]	[more]

BLAST of Chy11G186660 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 1..88
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy11G186660.1	Chy11G186660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity