Chy10G184960 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G184960
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	SKP1-like protein
Location	chrH10: 17456924 .. 17459462 (-)
RNA-Seq Expression	Chy10G184960
Synteny	Chy10G184960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTAGCGAAGCAATCCGTGGTGGTTCGTATCTTTCTTGAAGAGGATGATTCAAATGACGATGAAATCACGATTCCGCTGCCGAATATTAGTGGAAGATTGCTGGGGATGGTGATCGAGTGGATTGTGATGCATGTCGAGGAAAAATTAGCGGAGGAAGCTCTCCAGGCTTGGAAAACTAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCGAATTACCTGGAAGTTACCGATTTATTCCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATAACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGGTCTTCGAACCATCCGCTAGCGGTAGCGGTACCGGAAGCACTAGCGGCAGTAAATAAATTTTTGATTTCGCTAACTTTTAGTTTATGTTTTTGAGGAAAACACAAGATGGGTGTCAATAGAATATATTAGAAATATTATAGATTCATCATGGTTTACTGTTTTCAAAATTCTTGAGGCAATCCATAGGTTTTTCTTTTCAAATGTTACTGTTCTTGCTGGAAAAATCACTGATGTCTCGCATTGTTATTGATTTTTATGTGGAAACATTTGTTTATTTGAAGATATTCTACATCCATCTTTTCTAAACTTAATCATAATAGTATATATAGGGAGGATACTTGGAAACTCACTCCTTTGGTTTAGGTGTCTCGGCACCCGATCGAACCAAAATTCTTGAGTTTTGACAAAATATTAGAAATGTATTCTCTCATGTTGATAAAGAAAAAAGAAAAATCAACTAATAGTTGTTTTTTTGTTTGAGTTTATCCATCTTAAATTCTGTTAGTTGCAGTTATCAAAGATGCTCAATGCTGCAAAAGACTATCGGACTAATCAAAGTTAGTATGTTGTGAAAAAATGATTAACATTGGAGACTAATCAAACTTTAAGAGTAAAATTGTTCAAACCAAATGAAAACTATATCAAAAAAAAAAAAAATTGAGAATGATGAATATGAGAAATCTCTTCAAATGCACCAAAAACAAATTATAATTTTCCTATTTGATAGCATCATCATATTTGAAATGACAAAAATGTGGGTCTTTTGACAAGCCCTCTAAATTAGAGCAAAGTCAATACTAACAATATTTGGCCAAGAAAAAAATTAAACAATGGCCTAAATGCATTGTATGTATATATATATATATTAAAGCTATTTGGTGTCAATTTTTGTATTTTAAAAAATTAGCCTCCATTAACTAATGATGACCTTTATGGAAAATTTTAAAGTATTTCACACCAACTATTACATTACCCTCCCCTTCCAATGTCAAAACCTAAACCAAGAGTAATTTAGGAGAATCAAATCAATTGTATAAAAAAACCAACTTAACATTTGTTTCACTAACAATTAAAAAGATTTATTATCTCGTTATTCACATTAAATTATTCATTTTGTTATCTAGGTAAAGTTTTTCGAATAGAATGAGAAAAGGAAAAAAATGAAAAAGAGAATGGGATCGAGAAGGAGGGCCCAATTTGTATTGCCGGCGAGTGATTTCTTGGCCATACATTTGAGTTATACGCGCAAATTTAATTTGACTTTCACTTTTTTTATCTTTCCCTTCAAAAAATCAACTTTTCTTTTCTTTTTCTTTCTTCTTTTTAACTATTCAACAATTTAACCAATTATTCTTTTGTATGAAATATAGATATCCATTTTATCAATACCAATATATATAAATACCAATAACAACATTTCTTTATAATCATCAATTTTGTTTAGGTGTTGTATCTACTAACACTTCAGTTTTGTAGGTGTTTTTGGATTGATTTCTAATATTTTGATGTACTTATATCATCTAACTATTGAATATTTTTAAATCTTGAACGTTTATACTAGTACAAAGTGGAAGTGAGGAGATTTGAACTCGGGACATATAGATGTTAGTTGAGTTGTAAATTTTACGTTAAAATTATACAATAAATGTCAATATCTTTGAACTAGACGATTTTTCACAAATTAAGTTTAGTTAAAATAACATATCTTGATTCATAAATGGTTTTTTAAGGAATTGTGTTTTTCTTATTCTACTTCCTTTATTACTTAATTAGATTTCTTGATGGATAAGAGAGAACTGTTTGAATGAGGTAGTAAGAGGACCATGTTTAATTAGAGTATTATCTTTTTATCTAATGAGCATAATAAAATAATAGATAATGCACATAAGCTACATTAGTAATAATATTATATTTTTAAATAAATCTAACACTCATTGAATTGAAAACTTGATACTTTATGTCTTCACAACTTGTATTTCAAAATATTTAGACCCAAATTTCAATCTTCCCAAAAAATTATACTTTGCCTATAATTTAATTAAATGATAGTCTCCTCTATCTATATAGTTATGATTTTATTAAGTTGTGTATTGA

mRNA sequence

ATGAGGAGTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTAGCGAAGCAATCCGTGGTGGTTCGTATCTTTCTTGAAGAGGATGATTCAAATGACGATGAAATCACGATTCCGCTGCCGAATATTAGTGGAAGATTGCTGGGGATGGTGATCGAGTGGATTGTGATGCATGTCGAGGAAAAATTAGCGGAGGAAGCTCTCCAGGCTTGGAAAACTAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCGAATTACCTGGAAGTTACCGATTTATTCCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATAACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGTTATCAAAGATGCTCAATGCTGCAAAAGACTATCGGACTAATCAAATTGTGTATTGA

Coding sequence (CDS)

ATGAGGAGTGTTAACCTAAGATCATCTGAGAACGAGATTTTCAAGGTGAGTGAGGAGGTAGCGAAGCAATCCGTGGTGGTTCGTATCTTTCTTGAAGAGGATGATTCAAATGACGATGAAATCACGATTCCGCTGCCGAATATTAGTGGAAGATTGCTGGGGATGGTGATCGAGTGGATTGTGATGCATGTCGAGGAAAAATTAGCGGAGGAAGCTCTCCAGGCTTGGAAAACTAAGTTCATGGAGGATCTGGATTTGGATTTGTTGTTTGAGCTTATAATGGCTGCGAATTACCTGGAAGTTACCGATTTATTCCATGCAACTTGCCAATGTGTCGCTGATAAGATCTCCGGAAAGAGTCCGGAGGAGATTCGGAAGATCTTTAACATAACGAATGATTTTACACCTGAAGAAGAGGCTGAGATTCGACGCCAGAATGCTTGGTTATCAAAGATGCTCAATGCTGCAAAAGACTATCGGACTAATCAAATTGTGTATTGA

Protein sequence

MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWIVMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAWLSKMLNAAKDYRTNQIVY*

Homology

[Close]

BLAST of Chy10G184960 vs. ExPASy Swiss-Prot
Match: Q3ZCF3 (S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEE---DDSNDDEITIPLPNISGRLLGMVI 60
           M S+ L+SS+ EIF+V  E+AKQSV ++  LE+   DD  DD+  +PLPN++  +L  VI
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDD-PVPLPNVNAAILKKVI 60

Query: 61  EWIVMHVEE----------KLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHA 120
           +W   H ++          +   + +  W  +F++ +D   LFELI+AANYL++  L   
Sbjct: 61  QWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDV 120

Query: 121 TCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           TC+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Chy10G184960 vs. ExPASy Swiss-Prot
Match: P63209 (S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEE---DDSNDDEITIPLPNISGRLLGMVI 60
           M S+ L+SS+ EIF+V  E+AKQSV ++  LE+   DD  DD+  +PLPN++  +L  VI
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDD-PVPLPNVNAAILKKVI 60

Query: 61  EWIVMHVEE----------KLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHA 120
           +W   H ++          +   + +  W  +F++ +D   LFELI+AANYL++  L   
Sbjct: 61  QWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDV 120

Query: 121 TCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           TC+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Chy10G184960 vs. ExPASy Swiss-Prot
Match: Q5ZKF5 (S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEE---DDSNDDEITIPLPNISGRLLGMVI 60
           M S+ L+SS+ EIF+V  E+AKQSV ++  LE+   DD  DD+  +PLPN++  +L  VI
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDD-PVPLPNVNAAILKKVI 60

Query: 61  EWIVMHVEE----------KLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHA 120
           +W   H ++          +   + +  W  +F++ +D   LFELI+AANYL++  L   
Sbjct: 61  QWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDV 120

Query: 121 TCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           TC+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Chy10G184960 vs. ExPASy Swiss-Prot
Match: P63208 (S-phase kinase-associated protein 1 OS=Homo sapiens OX=9606 GN=SKP1 PE=1 SV=2)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEE---DDSNDDEITIPLPNISGRLLGMVI 60
           M S+ L+SS+ EIF+V  E+AKQSV ++  LE+   DD  DD+  +PLPN++  +L  VI
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDD-PVPLPNVNAAILKKVI 60

Query: 61  EWIVMHVEE----------KLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHA 120
           +W   H ++          +   + +  W  +F++ +D   LFELI+AANYL++  L   
Sbjct: 61  QWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDV 120

Query: 121 TCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           TC+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Chy10G184960 vs. ExPASy Swiss-Prot
Match: Q4R5B9 (S-phase kinase-associated protein 1 OS=Macaca fascicularis OX=9541 GN=SKP1 PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.2e-30
Identity = 71/161 (44.10%), Postives = 104/161 (64.60%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEE---DDSNDDEITIPLPNISGRLLGMVI 60
           M S+ L+SS+ EIF+V  E+AKQSV ++  LE+   DD  DD+  +PLPN++  +L  VI
Sbjct: 1   MPSIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDD-PVPLPNVNAAILKKVI 60

Query: 61  EWIVMHVEE----------KLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHA 120
           +W   H ++          +   + +  W  +F++ +D   LFELI+AANYL++  L   
Sbjct: 61  QWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLK-VDQGTLFELILAANYLDIKGLLDV 120

Query: 121 TCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           TC+ VA+ I GK+PEEIRK FNI NDFT EEEA++R++N W
Sbjct: 121 TCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQW 159

[Close]

BLAST of Chy10G184960 vs. ExPASy TrEMBL
Match: A0A0A0KRJ8 (SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 144/149 (96.64%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSN+DEITIPLPNISGRLLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           VMHVEEKLAEEAL AWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 150
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. ExPASy TrEMBL
Match: A0A5A7SU15 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G007240 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.0e-71
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE L AWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 150
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. ExPASy TrEMBL
Match: A0A5D3CCN6 (SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002490 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.0e-71
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE L AWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 150
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. ExPASy TrEMBL
Match: A0A1S3BGP6 (SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.0e-71
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE L AWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 150
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. ExPASy TrEMBL
Match: A0A6J1H051 (SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111458404 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.1e-47
Identity = 95/148 (64.19%), Postives = 121/148 (81.76%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+  L+SS+N+IFKVSEE+A QS V++ FLE+  S+ DEI IPLPN+SGR+L +VIEWI
Sbjct: 1   MRTFQLKSSDNKIFKVSEEIAIQSAVIKSFLEDFGSDSDEIVIPLPNVSGRILEIVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           V H +++L +E +Q W+ KFM DL++++  EL+MAANYLEV  L H TCQ +AD+ISGKS
Sbjct: 61  VKHADDELTKEEVQDWENKFMNDLNMEVTTELVMAANYLEVIGLLHRTCQSIADQISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           PEEIR+I NITNDFTPEEEAEIR QN W
Sbjct: 121 PEEIRRILNITNDFTPEEEAEIREQNGW 148

[Close]

BLAST of Chy10G184960 vs. NCBI nr
Match: XP_004142439.1 (SKP1-like protein 14 [Cucumis sativus])

HSP 1 Score: 283 bits (724), Expect = 2.13e-95
Identity = 144/149 (96.64%), Postives = 147/149 (98.66%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR VNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSN+DEITIPLPNISGRLLGMVIEWI
Sbjct: 1   MRIVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
           VMHVEEKLAEEAL AWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  VMHVEEKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 149
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. NCBI nr
Match: XP_008446842.1 (PREDICTED: SKP1-like protein 12 [Cucumis melo])

HSP 1 Score: 275 bits (703), Expect = 3.16e-92
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE L AWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 149
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. NCBI nr
Match: KAE8648853.1 (hypothetical protein Csa_008932 [Cucumis sativus])

HSP 1 Score: 275 bits (704), Expect = 6.58e-91
Identity = 139/144 (96.53%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWIVMHVE 65
           +RSSENEIFKVSEEVAKQSVVVRIFLEEDDSN+DEITIPLPNISGRLLGMVIEWIVMHVE
Sbjct: 104 MRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNNDEITIPLPNISGRLLGMVIEWIVMHVE 163

Query: 66  EKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 125
           EKLAEEAL AWKTKF+EDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR
Sbjct: 164 EKLAEEALHAWKTKFLEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKSPEEIR 223

Query: 126 KIFNITNDFTPEEEAEIRRQNAWL 149
           KIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 224 KIFNITNDFTPEEEAEIRRQNAWV 247

[Close]

BLAST of Chy10G184960 vs. NCBI nr
Match: KAA0034704.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (703), Expect = 9.66e-91
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE L AWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 149
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. NCBI nr
Match: TYK09255.1 (SKP1-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 275 bits (703), Expect = 1.03e-90
Identity = 140/149 (93.96%), Postives = 144/149 (96.64%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           MR+VNLRSSENEIFKVSEEVAKQSVVVR FLEED+SN DEITIPLPNISG+LLGMVIEWI
Sbjct: 1   MRTVNLRSSENEIFKVSEEVAKQSVVVRNFLEEDNSNGDEITIPLPNISGKLLGMVIEWI 60

Query: 61  VMHVEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120
            MHVEEKLAEE L AWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS
Sbjct: 61  AMHVEEKLAEEDLHAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISGKS 120

Query: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWL 149
           PEEIRKIFNITNDFTPEEEAEIRRQNAW+
Sbjct: 121 PEEIRKIFNITNDFTPEEEAEIRRQNAWV 149

[Close]

BLAST of Chy10G184960 vs. TAIR 10
Match: AT1G10230.1 (SKP1-like 18 )

HSP 1 Score: 128.6 bits (322), Expect = 4.6e-30
Identity = 67/150 (44.67%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 6   LRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWIVMHV- 65
           L SS+ E F++ E VA++ +++   +E++ + +    IPL N++G +L  +IE+  MHV 
Sbjct: 33  LTSSDGESFEIDEAVARKFLIIVHMMEDNCAGE---AIPLENVTGDILSKIIEYAKMHVN 92

Query: 66  ------EEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 125
                 E++ A++ L +W  KFME LDL+ +F++I+AANYL    L     Q VAD I  
Sbjct: 93  EPSEEDEDEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKD 152

Query: 126 KSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           K+PEE+R+IFNI NDFTPEEE EIR++NAW
Sbjct: 153 KTPEEVREIFNIENDFTPEEEEEIRKENAW 179

[Close]

BLAST of Chy10G184960 vs. TAIR 10
Match: AT5G42190.1 (E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein )

HSP 1 Score: 128.3 bits (321), Expect = 5.9e-30
Identity = 72/169 (42.60%), Postives = 105/169 (62.13%), Query Frame = 0


Query: 1   MRSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI 60
           +R + L+SS+ E F++ E VA +S  ++  +E+D +++    IPLPN++ ++L  VIE+ 
Sbjct: 4   VRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNG---IPLPNVTSKILSKVIEYC 63

Query: 61  VMHVE--EK-------------------LAEEALQAWKTKFMEDLDLDLLFELIMAANYL 120
             HVE  EK                    ++E L+ W ++F++ +D   LF+LI+AANYL
Sbjct: 64  KRHVEAAEKSETTADAAAATTTTTVASGSSDEDLKTWDSEFIK-VDQGTLFDLILAANYL 123

Query: 121 EVTDLFHATCQCVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
            +  L   TCQ VAD I GK+PEEIRK FNI NDFTPEEE E+RR+N W
Sbjct: 124 NIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQW 168

[Close]

BLAST of Chy10G184960 vs. TAIR 10
Match: AT1G75950.1 (S phase kinase-associated protein 1 )

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-29
Identity = 70/158 (44.30%), Postives = 99/158 (62.66%), Query Frame = 0


Query: 2   RSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWIV 61
           + + L+SS+ E F+V E VA +S  +   +E+D  ++    +PLPN++ ++L  VIE+  
Sbjct: 4   KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNG---VPLPNVTSKILAKVIEYCK 63

Query: 62  MHVE-----------EKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQ 121
            HVE              +++ L+AW   FM+ +D   LFELI+AANYL + +L   TCQ
Sbjct: 64  RHVEAAASKAEAVEGAATSDDDLKAWDADFMK-IDQATLFELILAANYLNIKNLLDLTCQ 123

Query: 122 CVADKISGKSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
            VAD I GK+PEEIR  FNI NDFTPEEE E+RR+N W
Sbjct: 124 TVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQW 157

[Close]

BLAST of Chy10G184960 vs. TAIR 10
Match: AT3G21850.1 (SKP1-like 9 )

HSP 1 Score: 125.9 bits (315), Expect = 3.0e-29
Identity = 66/150 (44.00%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 2   RSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWIV 61
           + + L+SS+   F+V EE A+Q  ++   + E+D  D+   IPLPN++G++L MVIE+  
Sbjct: 4   KKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDN--GIPLPNVTGKILAMVIEYCN 63

Query: 62  MH---VEEKLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121
            H        +++ L+ W  +FME  D   +F+LI AANYL +  LF   CQ VA+ I G
Sbjct: 64  KHHVDAANPCSDDDLKKWDKEFMEK-DTSTIFDLIKAANYLNIKSLFDLACQTVAEIIKG 123

Query: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
            +PE+IR+ FNI ND TPEEEA IRR+N W
Sbjct: 124 NTPEQIREFFNIENDLTPEEEAAIRRENKW 150

[Close]

BLAST of Chy10G184960 vs. TAIR 10
Match: AT4G34470.1 (SKP1-like 12 )

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-29
Identity = 72/150 (48.00%), Postives = 95/150 (63.33%), Query Frame = 0


Query: 2   RSVNLRSSENEIFKVSEEVAKQSVVVRIFLEEDDSNDDEITIPLPNISGRLLGMVIEWI- 61
           + + L SS+ + F+V E VA QS  +   +E+D   D    IPL N+  ++L  VIE+  
Sbjct: 4   KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADG---IPLANVESKILVKVIEYCK 63

Query: 62  VMHVEE--KLAEEALQAWKTKFMEDLDLDLLFELIMAANYLEVTDLFHATCQCVADKISG 121
             HV+E   ++EE L  W  KFM DL+   +FELI+AANYL +  LF  TCQ VAD I G
Sbjct: 64  KYHVDEANPISEEDLNKWDEKFM-DLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKG 123

Query: 122 KSPEEIRKIFNITNDFTPEEEAEIRRQNAW 149
           K+PEEIR  FNI NDFTPEEE  +R++N W
Sbjct: 124 KTPEEIRSTFNIENDFTPEEEEAVRKENQW 149

The following BLAST results are available for this feature:

BLAST of Chy10G184960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3ZCF3	1.2e-30	44.10	S-phase kinase-associated protein 1 OS=Bos taurus OX=9913 GN=SKP1 PE=2 SV=1	[more]
P63209	1.2e-30	44.10	S-phase kinase-associated protein 1 OS=Cavia porcellus OX=10141 GN=SKP1 PE=2 SV=...	[more]
Q5ZKF5	1.2e-30	44.10	S-phase kinase-associated protein 1 OS=Gallus gallus OX=9031 GN=SKP1 PE=2 SV=1	[more]
P63208	1.2e-30	44.10	S-phase kinase-associated protein 1 OS=Homo sapiens OX=9606 GN=SKP1 PE=1 SV=2	[more]
Q4R5B9	1.2e-30	44.10	S-phase kinase-associated protein 1 OS=Macaca fascicularis OX=9541 GN=SKP1 PE=2 ...	[more]

BLAST of Chy10G184960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRJ8	2.6e-73	96.64	SKP1-like protein OS=Cucumis sativus OX=3659 GN=Csa_5G622630 PE=3 SV=1	[more]
A0A5A7SU15	7.0e-71	93.96	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G...	[more]
A0A5D3CCN6	7.0e-71	93.96	SKP1-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475...	[more]
A0A1S3BGP6	7.0e-71	93.96	SKP1-like protein OS=Cucumis melo OX=3656 GN=LOC103489446 PE=3 SV=1	[more]
A0A6J1H051	1.1e-47	64.19	SKP1-like protein OS=Cucurbita moschata OX=3662 GN=LOC111458404 PE=3 SV=1	[more]

BLAST of Chy10G184960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142439.1	2.13e-95	96.64	SKP1-like protein 14 [Cucumis sativus]	[more]
XP_008446842.1	3.16e-92	93.96	PREDICTED: SKP1-like protein 12 [Cucumis melo]	[more]
KAE8648853.1	6.58e-91	96.53	hypothetical protein Csa_008932 [Cucumis sativus]	[more]
KAA0034704.1	9.66e-91	93.96	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]
TYK09255.1	1.03e-90	93.96	SKP1-like protein 12 [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G184960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10230.1	4.6e-30	44.67	SKP1-like 18	[more]
AT5G42190.1	5.9e-30	42.60	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	[more]
AT1G75950.1	1.0e-29	44.30	S phase kinase-associated protein 1	[more]
AT3G21850.1	3.0e-29	44.00	SKP1-like 9	[more]
AT4G34470.1	5.0e-29	48.00	SKP1-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001232	S-phase kinase-associated protein 1-like	SMART	SM00512	skp1_3	coord: 1..101 e-value: 7.3E-24 score: 95.3
IPR016073	SKP1 component, POZ domain	PFAM	PF03931	Skp1_POZ	coord: 3..64 e-value: 3.6E-13 score: 49.5
IPR011333	SKP1/BTB/POZ domain superfamily	GENE3D	3.30.710.10	Potassium Channel Kv1.1; Chain A	coord: 1..151 e-value: 4.3E-53 score: 181.7
IPR011333	SKP1/BTB/POZ domain superfamily	SUPERFAMILY	54695	POZ domain	coord: 4..67
IPR016072	SKP1 component, dimerisation	PFAM	PF01466	Skp1	coord: 103..148 e-value: 3.0E-24 score: 84.8
IPR016897	S-phase kinase-associated protein 1	PIRSF	PIRSF028729	SCF_Skp	coord: 1..152 e-value: 2.7E-49 score: 165.0
IPR016897	S-phase kinase-associated protein 1	PANTHER	PTHR11165	SKP1	coord: 2..148
None	No IPR available	PANTHER	PTHR11165:SF110	SCF UBIQUITIN LIGASE, SKP1 COMPONENT	coord: 2..148
IPR036296	SKP1-like, dimerisation domain superfamily	SUPERFAMILY	81382	Skp1 dimerisation domain-like	coord: 73..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G184960.1	Chy10G184960.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0016301	kinase activity