Chy10G184420 (gene) Cucumber (hystrix) v1

Overview
NameChy10G184420
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionR3H domain-containing protein 2-like
LocationchrH10: 17048611 .. 17049380 (+)
RNA-Seq ExpressionChy10G184420
SyntenyChy10G184420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTTCTCTCCATTTCTTCTCTTGCTGTGATCGTAAATCGCTCCGGAAAATTCACCGTCTCCATCAATCGCGCCAAATTCCGTCCCTCGATTAATTTTGATGTACGTTCGCTTTCCGATTCCGAAATCCTAATTTCTTTAGATTTAGTGTGCAATCGACGTTCTCGATCACCTAATGCCTCCATTGCTGCCAGGAGTTTAGAGTTTCGGTCCTTTGCTTTACCACGGAGGGCTCTGCAGCGGAGAACATCGAAGGTCCTGAGTCGTGGAAGGTCGCAGAGCTGGATGAGGCCGTGAGACAACGGAATTCCATATTAGAGGTATTAAATATTCTGCCGACGGTGCTTCTCTCTCAGATCATTCGGTTCCTGCTGAAATGTTTGAAGATTCTATCAGTCAGGTTGATCGGTTCCTAGCGAAGCCTTTCGGAATCCTTAACTAAGCGATTTATACTTTTCTGAACCATTCCTTTAGATTTAGTCTGCAATCGAAGTTCTCTATCTTCTAGTGCCGTCGTTTCTGCCAGGAGTTTAGATTTCGGTCCTTTGCTTTACCATGGAGGGCTCTGCAGCGGAGGATATCGAAGGTCCTGAGTCATGTAAGGTCGCAGAGTTGGATGAGGCCGTGAGACAATGGAATTCCATATTAGAGGTATTAAATATTCTTTCGACGGTGCTTCTCTCTCTGATCGTTCGATTCCTGCTGAAATGTTTGAAGATTCTATCAATCAGGTTGATCGGTTCCTAGAAGCCTTTCAGAATCCTTAA

mRNA sequence

ATGCATTTTCTCTCCATTTCTTCTCTTGCTGTGATCGTAAATCGCTCCGGAAAATTCACCGTCTCCATCAATCGCGCCAAATTCCGTCCCTCGATTAATTTTGATGAGTTTAGAGTTTCGGTCCTTTGCTTTACCACGGAGGGCTCTGCAGCGGAGAACATCGAAGGTCCTGAGTCGTGGAAGGTCGCAGAGCTGGATGAGGCCGTGAGACAACGGAATTCCATATTAGAGGGCTCTGCAGCGGAGGATATCGAAGGTCCTGAGTCATGTAAGGTCGCAGAGTTGGATGAGGCCGTGAGACAATGGAATTCCATATTAGAGGTTGATCGGTTCCTAGAAGCCTTTCAGAATCCTTAA

Coding sequence (CDS)

ATGCATTTTCTCTCCATTTCTTCTCTTGCTGTGATCGTAAATCGCTCCGGAAAATTCACCGTCTCCATCAATCGCGCCAAATTCCGTCCCTCGATTAATTTTGATGAGTTTAGAGTTTCGGTCCTTTGCTTTACCACGGAGGGCTCTGCAGCGGAGAACATCGAAGGTCCTGAGTCGTGGAAGGTCGCAGAGCTGGATGAGGCCGTGAGACAACGGAATTCCATATTAGAGGGCTCTGCAGCGGAGGATATCGAAGGTCCTGAGTCATGTAAGGTCGCAGAGTTGGATGAGGCCGTGAGACAATGGAATTCCATATTAGAGGTTGATCGGTTCCTAGAAGCCTTTCAGAATCCTTAA

Protein sequence

MHFLSISSLAVIVNRSGKFTVSINRAKFRPSINFDEFRVSVLCFTTEGSAAENIEGPESWKVAELDEAVRQRNSILEGSAAEDIEGPESCKVAELDEAVRQWNSILEVDRFLEAFQNP*
Homology
[Close]
BLAST of Chy10G184420 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 66/98 (67.35%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 35  DEFRVSVLCFTTEGSAAENIEGPESWKVAELDEAVRQRNSIL------------------ 94
           +EFRVSVL FT EGS+AE+ EGPESWK  ELDEAVRQ NSIL                  
Sbjct: 602 NEFRVSVLGFTMEGSSAEDTEGPESWKAGELDEAVRQWNSILECLRCCQEFRVSVFCFTV 661

Query: 95  EGSAAEDIEGPESCKVAELDEAVRQWNSILEVDRFLEA 115
           EGSAAEDIE PES KVAE DEAVRQWNSILEVDRFL +
Sbjct: 662 EGSAAEDIEDPESWKVAEFDEAVRQWNSILEVDRFLRS 699

[Close]
BLAST of Chy10G184420 vs. ExPASy TrEMBL
Match: A0A0A0KWM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615190 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 9.3e-17
Identity = 56/77 (72.73%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 1  MHFLSISSLAVIVNRSGKFTVSINRAKFRPSINFDEFRVSVLCFTTEGSAAENIEGPESW 60
          MHFLSISSLAVIV                P +   EFRVSVLCFTTEGSAAENIEGPESW
Sbjct: 1  MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLIL-EFRVSVLCFTTEGSAAENIEGPESW 60

Query: 61 KVAELDEAVRQRNSILE 78
          KVAELDEAVRQRNSILE
Sbjct: 61 KVAELDEAVRQRNSILE 76

[Close]
BLAST of Chy10G184420 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 2.57e-27
Identity = 66/98 (67.35%), Postives = 70/98 (71.43%), Query Frame = 0 

Query: 35  DEFRVSVLCFTTEGSAAENIEGPESWKVAELDEAVRQRNSILE----------------- 94
           +EFRVSVL FT EGS+AE+ EGPESWK  ELDEAVRQ NSILE                 
Sbjct: 602 NEFRVSVLGFTMEGSSAEDTEGPESWKAGELDEAVRQWNSILECLRCCQEFRVSVFCFTV 661

Query: 95  -GSAAEDIEGPESCKVAELDEAVRQWNSILEVDRFLEA 114
            GSAAEDIE PES KVAE DEAVRQWNSILEVDRFL +
Sbjct: 662 EGSAAEDIEDPESWKVAEFDEAVRQWNSILEVDRFLRS 699

[Close]
BLAST of Chy10G184420 vs. NCBI nr
Match: KGN52196.1 (hypothetical protein Csa_008631 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 7.02e-23
Identity = 56/77 (72.73%), Postives = 57/77 (74.03%), Query Frame = 0 

Query: 1  MHFLSISSLAVIVNRSGKFTVSINRAKFRPSINFDEFRVSVLCFTTEGSAAENIEGPESW 60
          MHFLSISSLAVIV                P +   EFRVSVLCFTTEGSAAENIEGPESW
Sbjct: 1  MHFLSISSLAVIVIAPENLPSPSIAPNSVPRLIL-EFRVSVLCFTTEGSAAENIEGPESW 60

Query: 61 KVAELDEAVRQRNSILE 77
          KVAELDEAVRQRNSILE
Sbjct: 61 KVAELDEAVRQRNSILE 76

The following BLAST results are available for this feature:
BLAST of Chy10G184420 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G184420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CFX42.3e-2367.35R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A0A0KWM89.3e-1772.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615190 PE=4 SV=1[more]
BLAST of Chy10G184420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034658.12.57e-2767.35R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... [more]
KGN52196.17.02e-2372.73hypothetical protein Csa_008631 [Cucumis sativus][more]
BLAST of Chy10G184420 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G184420.1Chy10G184420.1mRNA