Chy10G184360 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G184360
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	transformer-2 protein homolog alpha-like
Location	chrH10: 17006096 .. 17006770 (-)
RNA-Seq Expression	Chy10G184360
Synteny	Chy10G184360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAATGGGAAGAAGAAGAAGAGAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGATGTCTTTTCCCTTTGCTTTCAAACAACTCTTCCTAACAGGTCATTTTCTTTATTCTCTCCTCTTTTTTCACTTAAAAAAGTTAAGTGTCAAACGAAAGATTCGAACTTTTCACATCTTTGATAGAATAGAATAGAATGTTATGTCAATTACGTTACACTTGTTTTAACACTTTTCTACATACCTTTCTCATCCCAATTTGCCTAATCATATCATAGGGTTACTATTTTTTCTTCTGGGTAACAATTTCTTGATATATTTTGGACTTTAGAGACAATCTAACTGTCTAATAGCTCGATCGTTATTCATTAACCTATATGGTTATTTTTAAAATTCAAAGAAATAGATATATACGTGTGTGTGTACTGCAGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCAGAGGAGGAAGAGCCGGTGGCGGCGGCGGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGAAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGA

mRNA sequence

AAGAAAATGGGAAGAAGAAGAAGAGAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGATGTCTTTTCCCTTTGCTTTCAAACAACTCTTCCTAACAGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCAGAGGAGGAAGAGCCGGTGGCGGCGGCGGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGAAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGA

Coding sequence (CDS)

AAGAAAATGGGAAGAAGAAGAAGAGAGATTGCATTGATTTTGATTCTGATCTATTCATCTATGATGTCTTTTCCCTTTGCTTTCAAACAACTCTTCCTAACAGACAACAGTAATCACCAAGAAAGTGAGCATATGGAAAAACAATATGGTAGAAGATACAATGTAGAGGGTCGACATGGTTATACAAATGGGATCCCAACACATATAGCAATTACCCGCAGAGGAGGAAGAGCCGGTGGCGGCGGCGGAGGTAACGGTGCCGCAGGAATTCACGATCAAAACTGCATGAAGTTGATAGCAGCTGCAGTTTCCATATCAGTTGCATATTTGTGTGGACTTATTTGA

Protein sequence

KKMGRRRREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIPTHIAITRRGGRAGGGGGGNGAAGIHDQNCMKLIAAAVSISVAYLCGLI*

Homology

[Close]

BLAST of Chy10G184360 vs. ExPASy TrEMBL
Match: A0A0A0KWM3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.6e-45
Identity = 100/109 (91.74%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 7   RREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIP 66
           RR+IALILILIYSSM+ F  AFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIP
Sbjct: 3   RRKIALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYTNGIP 62

Query: 67  THIAITRRGGRAGGGGG-GNGAAGIHDQNCMKLIAAAVSISVAYLCGLI 115
           THIAITR GGR GGGGG GNGAAGIHDQNCMK IAAAVSISVAYLCGLI
Sbjct: 63  THIAITRGGGRGGGGGGRGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 111

[Close]

BLAST of Chy10G184360 vs. ExPASy TrEMBL
Match: A0A0A0KRC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613620 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.2e-41
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 3   MGRRRREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYT 62
           MGRRR E ALILILIYSSM+ F FAFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT
Sbjct: 1   MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYT 60

Query: 63  NGIPTHIAITRRGGRAGGG--GGGNGAAGIHDQNCMKLIAAAVSISVAYLCGLI 115
           +GIP HIAIT   GR G G   GGNGAAGIHDQNCMK IAAAVSISVAYLCGLI
Sbjct: 61  DGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]

BLAST of Chy10G184360 vs. ExPASy TrEMBL
Match: A0A1S3BFU5 (transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 3   MGRRRR--EIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 62
           MGRRRR  EIALILILIYSSM+   FAFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 1   MGRRRRRTEIALILILIYSSMV-HSFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60

Query: 63  YTNGIPTH-IAITRRGGRAGGG---GGGNGAAGIHDQNCMKLIAAAVSISVAYLCGLI 115
           YTNGIP H I ITR GGR GGG   GGGNGA GIHD+N MK IAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

[Close]

BLAST of Chy10G184360 vs. ExPASy TrEMBL
Match: A0A6J1J9S2 (glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.8e-07
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1  KKMGRRRREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60
          ++  RRRRE+ALIL+L++SSM++  FAFKQLF TD +  QESEH EK         G++G
Sbjct: 3  RRRRRRRREMALILMLLWSSMVA-SFAFKQLFTTDIAEFQESEHREKY--------GKNG 62

Query: 61 YTNGIPTHIAITRRGGRAGGGGGGNGAAG 90
              IP HI I   GG   GGGG  G+ G
Sbjct: 63 VV--IPMHIVIGLGGGGGSGGGGRGGSGG 80

[Close]

BLAST of Chy10G184360 vs. NCBI nr
Match: KGN52711.2 (hypothetical protein Csa_008218, partial [Cucumis sativus])

HSP 1 Score: 192 bits (488), Expect = 4.53e-61
Identity = 104/115 (90.43%), Postives = 107/115 (93.04%), Query Frame = 0


Query: 1   KKMGRRRREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60
           KKMGRR+  IALILILIYSSM+ F  AFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG
Sbjct: 1   KKMGRRK--IALILILIYSSMLPFSSAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60

Query: 61  YTNGIPTHIAITRRGGRAGGGGG-GNGAAGIHDQNCMKLIAAAVSISVAYLCGLI 114
           YTNGIPTHIAITR GGR GGGGG GNGAAGIHDQNCM+LIAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPTHIAITRGGGRGGGGGGRGNGAAGIHDQNCMELIAAAVSISVAYLCGLI 113

[Close]

BLAST of Chy10G184360 vs. NCBI nr
Match: KGN52185.1 (hypothetical protein Csa_009431 [Cucumis sativus])

HSP 1 Score: 176 bits (445), Expect = 1.68e-54
Identity = 95/114 (83.33%), Postives = 98/114 (85.96%), Query Frame = 0


Query: 3   MGRRRREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHGYT 62
           MGRRR E ALILILIYSSM+ F FAFKQL LTDNS HQESEHMEKQYGRRYN+EGRHGYT
Sbjct: 1   MGRRRTETALILILIYSSMLPFSFAFKQLSLTDNSKHQESEHMEKQYGRRYNIEGRHGYT 60

Query: 63  NGIPTHIAITRRGGRAGGGG--GGNGAAGIHDQNCMKLIAAAVSISVAYLCGLI 114
           +GIP HIAIT   GR G G   GGNGAAGIHDQNCMK IAAAVSISVAYLCGLI
Sbjct: 61  DGIPEHIAITHSEGRGGVGVSVGGNGAAGIHDQNCMKFIAAAVSISVAYLCGLI 114

[Close]

BLAST of Chy10G184360 vs. NCBI nr
Match: XP_008446753.1 (PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo])

HSP 1 Score: 156 bits (395), Expect = 7.45e-47
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 3   MGRRRR--EIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 62
           MGRRRR  EIALILILIYSSM+   FAFKQLF+TD+  HQESEHMEK +GRRYN+EGRHG
Sbjct: 1   MGRRRRRTEIALILILIYSSMVH-SFAFKQLFVTDSIKHQESEHMEK-HGRRYNIEGRHG 60

Query: 63  YTNGIPTH-IAITRRGGRAGGGGG---GNGAAGIHDQNCMKLIAAAVSISVAYLCGLI 114
           YTNGIP H I ITR GGR GGGGG   GNGA GIHD+N MK IAAAVSISVAYLCGLI
Sbjct: 61  YTNGIPIHDITITRGGGRGGGGGGRGGGNGAGGIHDRNYMKFIAAAVSISVAYLCGLI 116

[Close]

BLAST of Chy10G184360 vs. NCBI nr
Match: XP_022987217.1 (glycine-rich protein DOT1-like [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 5.48e-10
Identity = 45/89 (50.56%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 1  KKMGRRRREIALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNVEGRHG 60
          ++  RRRRE+ALIL+L++SSM++  FAFKQLF TD +  QESEH EK YG+   V     
Sbjct: 3  RRRRRRRREMALILMLLWSSMVA-SFAFKQLFTTDIAEFQESEHREK-YGKNGVV----- 62

Query: 61 YTNGIPTHIAITRRGGRAGGGGGGNGAAG 89
              IP HI I   GG   GGGG  G+ G
Sbjct: 63 ----IPMHIVIGLGGGGGSGGGGRGGSGG 80

[Close]

BLAST of Chy10G184360 vs. NCBI nr
Match: XP_023550250.1 (glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.1 bits (126), Expect = 5.62e-06
Identity = 54/137 (39.42%), Postives = 64/137 (46.72%), Query Frame = 0


Query: 10  IALILILIYSSMMSFPFAFKQLFLTDNSNHQESEHMEKQYGRRYNV-------------- 69
           +ALIL+L+ SSM++  FAFKQLF TD +  QESEH EK YG+   V              
Sbjct: 1   MALILMLLCSSMVA-SFAFKQLFTTDIAEFQESEHREK-YGKNGVVIPMRIVSRLGGGGG 60

Query: 70  ------------EGRHGYTNGIPTHIAITRRGGRAGGGGGGNGAAGIHD------QNCMK 114
                        G  G + G       +  GG  GGGGG  G  G H       QN M+
Sbjct: 61  SGGGGSGGGGRGGGGGGSSGGGSGGRGGSPGGGSGGGGGGRGGRGGAHSGTGNWHQNSMR 120

The following BLAST results are available for this feature:

BLAST of Chy10G184360 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G184360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWM3	4.6e-45	91.74	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613630 PE=4 SV=1	[more]
A0A0A0KRC8	5.2e-41	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613620 PE=4 SV=1	[more]
A0A1S3BFU5	3.3e-35	78.81	transformer-2 protein homolog alpha-like OS=Cucumis melo OX=3656 GN=LOC103489385...	[more]
A0A6J1J9S2	3.8e-07	49.44	glycine-rich protein DOT1-like OS=Cucurbita maxima OX=3661 GN=LOC111484806 PE=4 ...	[more]

BLAST of Chy10G184360 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52711.2	4.53e-61	90.43	hypothetical protein Csa_008218, partial [Cucumis sativus]	[more]
KGN52185.1	1.68e-54	83.33	hypothetical protein Csa_009431 [Cucumis sativus]	[more]
XP_008446753.1	7.45e-47	78.81	PREDICTED: transformer-2 protein homolog alpha-like [Cucumis melo]	[more]
XP_022987217.1	5.48e-10	50.56	glycine-rich protein DOT1-like [Cucurbita maxima]	[more]
XP_023550250.1	5.62e-06	39.42	glycine-rich RNA-binding protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Chy10G184360 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G184360.1	Chy10G184360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036297	interstrand cross-link repair
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008409	5'-3' exonuclease activity
molecular_function	GO:0017108	5'-flap endonuclease activity
molecular_function	GO:0070336	flap-structured DNA binding
molecular_function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
molecular_function	GO:0004528	phosphodiesterase I activity
molecular_function	GO:0008270	zinc ion binding