Chy10G183670 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G183670
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Reticulon-like protein
Location	chrH10: 16550070 .. 16553358 (+)
RNA-Seq Expression	Chy10G183670
Synteny	Chy10G183670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAATCCCCATGGCCGTCGCAGATTTGTATATTCCATTTCAGGCAATGGCAAAGGTTCGTACTGATCCATATATATAATCTTGAAAGTTCATGGACAAAAAACTCAGTGTCATTCCTTGCTAAAATGGGGTGTTTTGGAATTTGAATTTGCAGTGGCGGAGCTGATGCTGTGGAAGAACAAGAGACAATCGGCGGCCATGGTGGCCGGAATGAGCGGTGTTTGGTTGATGGTGGAGGTTTTAGATTACCATTTGATTACTCTTATTTGCCATCTTCTCATCATCCTCATGCTTCTTCTCTTCTTATGGAAGAAATTAGCATTTTTCACAGTCCCATGGTATAACACACTAACACTAATTATAATTTAATGTGAATTTAAAAGCACTCAATTGTATTGGTAACATAGTAATGTTTTTTATATTTATCATTATTTTGAATGGTATAGGAGTCCACCCAATGCCCAAGATTTAGAAATCTCAGACTCCACTTTCACTCATCTCTTTCAAACATTCAATTGGTTCCTCCACAGCTTCTTTCAAATTTCCAAGGGCAATGACTTTAAGCTCTTTGCAATGGTACCCTCAATAATATATGTTTATTATTTCTCATCTTTTCCTTTAATTCCTTTTAAAACTATCATCTCGATATCTATAATAATTATACTATTTAGACTTCTAACCCTAAACTTATATAAACTTATATACGATTGTATTGTCCGGTATGAGTTTGATTACATTTTTATCACTCGATGACTCAATTTTTAGAATGAAAAGTTCGAGAAATATAATTGCAATATTGAATTTTCTTTTTCTTTTTGTAGGTAATGGCTGGCCTTTGGTTATTATCGGTTATTGGAGAGTTGGTGAGCTTATTCAATCTCGTGTGTATTGGTACATTCTCTTTTTCTATTTTACTAGAATTTTGTGCTAAAATGTGATGGATAGTTTTAAAATAATATATCTCCACTAAAGCTAACATTTCTTTTTTTTCTCTTGATATGTTTGAACAAAATGAAATGATATGGATGATTAGTATTTGTGAGCTTGCAAGTAGTTTCTGTTGTATACGACAAGTATGAGGAGGTATTCAACAAGGTTGCCTCTCACATCAAATCTAATATGGACTACTACTTCCACTTCATTGATTCCAAATTTCTCACCAAAATTCCAAGCTGGCACAATATCAAACAATCTTAAATCATTCTTAATCTTAGTCTTTCATAATAATTATATATATAATCCATATTATATGTGTAGATTTTCTTTTTGCAAACCTTTCATTTCTAAGTGTTGATTCTTTTTTTTCTTCTTCTTTTCTATCTATAAATTAAATGAGGCACTTTGATGATTCAATAGTCTCTCTCTTGTATTATATTTTTCTTCTTTTGGGAAAAGAATTCATCTCGTTTATGATTATTTTCACTCTATGCATAAATTAAAATCAACTCACAAAATAATATAATAAAATTACTCTTCTCTTCTCTTCTGTTCTTTGAAATTAATTAGAAATTATTTTCCAATCGAATAAGTTGAAAAAACTAGAGAAAGATGAGGAAGTTGACAGAAGATGAATAACCTTTCATATTAACTTTTTCAAAAAACAATTGTTGTCTTTTTTAATTCCAAAATTAATTAACGTCTCTAATGTTTATGTTAATTTGTGTTTTTAAAGAACTTGGGAAGAGATGTGGTTTAAATTACATAAACTTTATTGTTGTATTTAAAAAGAAATTTAAATCGATTCACAAAAATTGAAAGATGTTATATTGAGTTGGGGTTTGGAGTTTTATTTAAAAGAAACACACCCCCATATGTAGGGTTATAAAAACACTTATATCCAATGGGCAATAGGTTTTTCTTTAACTATTCATTTAGAATTAGATATATGACTAAATTCTCTCTTTTTTAAAAGGAAATATAAGTAATAAGAATTCCAAATAACTGTTCCTTAGTTTTGAGATTAAATTTGATAAAATTACATTTTTTTTAGTAAGAATGTATACATAATTTTTTTCTTCATAACTTAGACATGAGATTCGAAGGAGAGAAATCTCATGTTTTCTAGTTTCCTCGTACGTCAAAACCTACCATTCCTAATAAATTCAAATTGATACATGATTAAATTAAAAGTAGATTTTTATTTTTGGTATCATAATTCAAGAGGGGGAAAATATTTGAATTTTGAAAAGAATAATTGAATTGAAAGAGAACCACATATGTATAAAGGTAGAAAAAAAAGTCAAAGGGAAAAAAATGGGAATATATTTGAAACGTATCCTCATCTTAGCTTTTTATAGATAGGATTATTATTCTGTAATTAGGTTGAGAATAATTAATAGAATACACATTTACCCCCATGCACCACCAATTCACCCAATTACCCTTTTCTCTTTTACTTTCTTTTCAATTCTTCAATTATTTAAATTCCAAATATGGTCAAACATCCATTTTGACCAATCATCCCTAACTTTTCAACCTTTAATTATATTTCATGGATAAATTTCAACAAATATTATTATATATATTTGACCCTTTGCATCACAACTTGACCTAGTAATTAGCAGTGAAAAATTGATCATAATTCATAAACACATAATTAATTATTTACCATATTAATTAAGTAGGTAGAAGAAAAATTGAATTAATAAACACCTAATAATGTGGAAGCTGACTTTGATTTCTCGCCCGCATCTTCCGTAATGGAAAAATGGTGTATCTTTTCATTACTCATTATTCTCCTTTTTCCTTTTACTAATCCTTTTTTTAAAAAAATTAAGTTTTTCTAAACTTAATTAAAACTTCAATAACCTAAAATAAATACATTTTCAAACTGAAACATATTTAAATTACGAGCCATTTAATCCATGACCTAAAAGTCAAAAAGTCAACAAATGTTGGGTTCTTTATTCAATTGTTTTTGCTATGAGATTCGTTTTATATTTAGTCTACGTGTTATTATATTATTGGTGGAAGGTTGAATATTACATATATAGACCTCTTGACTTGGCCCTTCGTCATTATTCTTCACTTCTAATAATCCAATCTCATTAACCTACACATTTACTCTTAGATGGTGAGGGTATTGAGAGATTTCCACGGCGGAGGATTGACGATCGCTTCCCCAGTTTTGATATTTTGGGCGGTGGTGCTTTCGATTTCGATCATCACAACCGTTATATTCTCCTGCACCGGCGGCAGCGGCGCTAAAGATAAGGACACGTCCCATGCCGATACTTACGGTGGTGCTGCTTGTGCTGCCGGCTGTGGAGGCGGCTGCGGCGCTTAA

mRNA sequence

ATGTCGAATCCCCATGGCCGTCGCAGATTTGTATATTCCATTTCAGGCAATGGCAAAGTGGCGGAGCTGATGCTGTGGAAGAACAAGAGACAATCGGCGGCCATGGTGGCCGGAATGAGCGGTGTTTGGTTGATGGTGGAGGTTTTAGATTACCATTTGATTACTCTTATTTGCCATCTTCTCATCATCCTCATGCTTCTTCTCTTCTTATGGAAGAAATTAGCATTTTTCACAGTCCCATGGAGTCCACCCAATGCCCAAGATTTAGAAATCTCAGACTCCACTTTCACTCATCTCTTTCAAACATTCAATTGGTTCCTCCACAGCTTCTTTCAAATTTCCAAGGGCAATGACTTTAAGCTCTTTGCAATGGTAATGGCTGGCCTTTGGTTATTATCGGTTATTGGAGAGTTGATGGTGAGGGTATTGAGAGATTTCCACGGCGGAGGATTGACGATCGCTTCCCCAGTTTTGATATTTTGGGCGGTGGTGCTTTCGATTTCGATCATCACAACCGTTATATTCTCCTGCACCGGCGGCAGCGGCGCTAAAGATAAGGACACGTCCCATGCCGATACTTACGGTGGTGCTGCTTGTGCTGCCGGCTGTGGAGGCGGCTGCGGCGCTTAA

Coding sequence (CDS)

ATGTCGAATCCCCATGGCCGTCGCAGATTTGTATATTCCATTTCAGGCAATGGCAAAGTGGCGGAGCTGATGCTGTGGAAGAACAAGAGACAATCGGCGGCCATGGTGGCCGGAATGAGCGGTGTTTGGTTGATGGTGGAGGTTTTAGATTACCATTTGATTACTCTTATTTGCCATCTTCTCATCATCCTCATGCTTCTTCTCTTCTTATGGAAGAAATTAGCATTTTTCACAGTCCCATGGAGTCCACCCAATGCCCAAGATTTAGAAATCTCAGACTCCACTTTCACTCATCTCTTTCAAACATTCAATTGGTTCCTCCACAGCTTCTTTCAAATTTCCAAGGGCAATGACTTTAAGCTCTTTGCAATGGTAATGGCTGGCCTTTGGTTATTATCGGTTATTGGAGAGTTGATGGTGAGGGTATTGAGAGATTTCCACGGCGGAGGATTGACGATCGCTTCCCCAGTTTTGATATTTTGGGCGGTGGTGCTTTCGATTTCGATCATCACAACCGTTATATTCTCCTGCACCGGCGGCAGCGGCGCTAAAGATAAGGACACGTCCCATGCCGATACTTACGGTGGTGCTGCTTGTGCTGCCGGCTGTGGAGGCGGCTGCGGCGCTTAA

Protein sequence

MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMVMAGLWLLSVIGELMVRVLRDFHGGGLTIASPVLIFWAVVLSISIITTVIFSCTGGSGAKDKDTSHADTYGGAACAAGCGGGCGA*

Homology

[Close]

BLAST of Chy10G183670 vs. ExPASy Swiss-Prot
Match: A2RVT6 (Reticulon-like protein B14 OS=Arabidopsis thaliana OX=3702 GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-20
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           RRR +Y   G G+ A++M WKNK++S  ++   + +W + EV++Y  IT +C +L++ + 
Sbjct: 18  RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIF 77

Query: 67  LLFLWKKLAFFTVPWS-PPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMV 126
           +  +W  +    +  S PP+  DL IS+S +  LF   NWF+   + IS G DF+L  + 
Sbjct: 78  IFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLA 137

Query: 127 MAGLWLLSVIG 137
           +  LW+LSV+G
Sbjct: 138 VVSLWILSVVG 148

[Close]

BLAST of Chy10G183670 vs. ExPASy Swiss-Prot
Match: Q9SUR3 (Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-19
Identity = 47/135 (34.81%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 6   GRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILM 65
           GR + V+ + G GK A++ +WKNK+ S  ++ G +  W++ E+++YHL+TL+CH++I+++
Sbjct: 75  GREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVL 134

Query: 66  LLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQ----TFNWFLHSFFQISKGNDFKL 125
            +LFLW     F +  SPP   ++ I +     L        N    S  +I+ G D K 
Sbjct: 135 AVLFLWSNATMF-INKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKK 194

Query: 126 FAMVMAGLWLLSVIG 137
           F + +AGLW+LS++G
Sbjct: 195 FLIAIAGLWVLSILG 208

[Close]

BLAST of Chy10G183670 vs. ExPASy Swiss-Prot
Match: Q9SUT9 (Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.9e-18
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 6   GRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILM 65
           GR R V+ + G GK A++ +WK+K+ S  +  G +  W++ E+++YHL+TL+CH++I+ +
Sbjct: 71  GRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVAL 130

Query: 66  LLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQ----TFNWFLHSFFQISKGNDFKL 125
            +LFLW     F +  SPP   ++ I +     L        N  + S  +I+ G D K 
Sbjct: 131 AVLFLWSNATMF-IHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKK 190

Query: 126 FAMVMAGLWLLSVIG 137
           F   +AGLW+LS++G
Sbjct: 191 FLSAIAGLWVLSILG 204

[Close]

BLAST of Chy10G183670 vs. ExPASy Swiss-Prot
Match: Q9LJQ5 (Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-15
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           R+R ++SI G GKVA+++LW+  + +A +V G+S +W ++EV++Y+ ITLICH  +  ML
Sbjct: 26  RQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSML 85

Query: 67  LLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQT----FNWFLHSFFQISKGNDFKLF 126
             F+W   + F + W  P   ++ + +S+F  L ++    FN  L     ++ G D  LF
Sbjct: 86  FFFIWSTASDF-LNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLF 145

Query: 127 AMVMAGLWLLSVIG 137
            +    L+++S+IG
Sbjct: 146 FLTTISLYIVSIIG 158

[Close]

BLAST of Chy10G183670 vs. ExPASy Swiss-Prot
Match: Q9FFS0 (Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.6e-15
Identity = 45/135 (33.33%), Postives = 73/135 (54.07%), Query Frame = 0


Query: 6   GRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILM 65
           GR + V+ + G GK A++ LW+NK+ S  ++  ++  W++ E+ +YHL+  +CH  I  +
Sbjct: 54  GREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFAL 113

Query: 66  LLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQ----TFNWFLHSFFQISKGNDFKL 125
             LFLW     F +  S P+  ++ I +     L        N  L     I+ G D K 
Sbjct: 114 AALFLWSNACTF-IHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKK 173

Query: 126 FAMVMAGLWLLSVIG 137
           F +V+AGLW+LS+IG
Sbjct: 174 FILVIAGLWVLSIIG 187

[Close]

BLAST of Chy10G183670 vs. ExPASy TrEMBL
Match: A0A5D3CCB1 (Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001260 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.3e-63
Identity = 125/139 (89.93%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHL 60
           MSNPHGRR F+YSI GNGKVAELMLWKNK++SAAMVAGMSGVWLMVEVLDYHLITLICHL
Sbjct: 1   MSNPHGRRSFLYSILGNGKVAELMLWKNKKESAAMVAGMSGVWLMVEVLDYHLITLICHL 60

Query: 61  LIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFK 120
           LIILMLLLFLWKKLAF  VPWSPP AQDLEISDS+ THLFQTFNWFLHSFFQIS GNDFK
Sbjct: 61  LIILMLLLFLWKKLAFLPVPWSPPTAQDLEISDSSLTHLFQTFNWFLHSFFQISNGNDFK 120

Query: 121 LFAMVMAGLWLLSVIGELM 140
           LFAMVM  LWLLSVIGEL+
Sbjct: 121 LFAMVMGSLWLLSVIGELV 139

[Close]

BLAST of Chy10G183670 vs. ExPASy TrEMBL
Match: A0A6J1HWC4 (Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467461 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 91/139 (65.47%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHL 60
           MS+   R RF++SI G+GKVAELMLWK KR+SAAM+AG+SGVW ++EVLDYH +TL+C+L
Sbjct: 1   MSDSGVRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWFLLEVLDYHFVTLLCYL 60

Query: 61  LIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFK 120
           LII MLLLF W KLA   + W+PP+  D EIS++T TH F TFNWFLH FFQIS   +FK
Sbjct: 61  LIITMLLLFSWNKLALL-INWAPPSVHDFEISNATLTHFFDTFNWFLHHFFQISTAQNFK 120

Query: 121 LFAMVMAGLWLLSVIGELM 140
           LFAMVM  +WL+S+IGELM
Sbjct: 121 LFAMVMGSIWLVSLIGELM 138

[Close]

BLAST of Chy10G183670 vs. ExPASy TrEMBL
Match: A0A6J1G247 (Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 3.5e-43
Identity = 92/138 (66.67%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 1   MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHL 60
           MSN   R RF++SI G+GKVAELMLWK KR+SAAM+AG+SGVWL++EVLDYH +TL+C+L
Sbjct: 63  MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL 122

Query: 61  LIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFK 120
           LII MLLLF W KLA   V W+PPN  D EIS++TFT  F T NW +H FFQIS G +FK
Sbjct: 123 LIITMLLLFSWNKLALL-VNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFK 182

Query: 121 LFAMVMAGLWLLSVIGEL 139
           LFAMVM  +WL+S+IGEL
Sbjct: 183 LFAMVMGSIWLVSLIGEL 199

[Close]

BLAST of Chy10G183670 vs. ExPASy TrEMBL
Match: A0A6J1DC54 (Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111018734 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.0e-39
Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           R RF++SI G+GKVA++MLWKNK  SAA + G+S VWL+ E L+Y  +TL+CHLLIILML
Sbjct: 17  RHRFMHSILGHGKVADMMLWKNKTASAATLVGLSAVWLVFEGLEYPFVTLLCHLLIILML 76

Query: 67  LLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMVM 126
           LL +W KLA     W+PPN  D +IS+STF HLF +FNW L +FF++S G+DFKLFAMVM
Sbjct: 77  LLLVWNKLALL-ANWAPPNVHDFQISESTFRHLFDSFNWLLFNFFEVSSGHDFKLFAMVM 136

Query: 127 AGLWLLSVIGEL 139
            GLWL+S IGEL
Sbjct: 137 GGLWLISAIGEL 147

[Close]

BLAST of Chy10G183670 vs. ExPASy TrEMBL
Match: A0A5N6RF69 (Reticulon-like protein OS=Carpinus fangiana OX=176857 GN=FH972_015839 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-29
Identity = 65/131 (49.62%), Postives = 97/131 (74.05%), Query Frame = 0


Query: 6   GRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILM 65
           GR R +++I G GKVA+++LWKN + SAA++AG + +WL+ EV +Y  +TL+CHLLII M
Sbjct: 20  GRERSLHNILGGGKVADILLWKNTKLSAAILAGFTTIWLLFEVAEYQFVTLLCHLLIITM 79

Query: 66  LLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMV 125
           L++F+W K A F +   PPN Q++ +S+ST+ HLF   NWFL+ F++IS G D K F + 
Sbjct: 80  LIIFIWSKAAGF-IDRRPPNIQEIRLSESTWRHLFTNVNWFLYKFYEISSGKDLKHFFLA 139

Query: 126 MAGLWLLSVIG 137
           ++ LW+LSV+G
Sbjct: 140 VSCLWMLSVVG 149

[Close]

BLAST of Chy10G183670 vs. NCBI nr
Match: KAA0034583.1 (reticulon-like protein B14 [Cucumis melo var. makuwa] >TYK09135.1 reticulon-like protein B14 [Cucumis melo var. makuwa])

HSP 1 Score: 252 bits (643), Expect = 8.73e-82
Identity = 125/138 (90.58%), Postives = 129/138 (93.48%), Query Frame = 0


Query: 1   MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHL 60
           MSNPHGRR F+YSI GNGKVAELMLWKNK++SAAMVAGMSGVWLMVEVLDYHLITLICHL
Sbjct: 1   MSNPHGRRSFLYSILGNGKVAELMLWKNKKESAAMVAGMSGVWLMVEVLDYHLITLICHL 60

Query: 61  LIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFK 120
           LIILMLLLFLWKKLAF  VPWSPP AQDLEISDS+ THLFQTFNWFLHSFFQIS GNDFK
Sbjct: 61  LIILMLLLFLWKKLAFLPVPWSPPTAQDLEISDSSLTHLFQTFNWFLHSFFQISNGNDFK 120

Query: 121 LFAMVMAGLWLLSVIGEL 138
           LFAMVM  LWLLSVIGEL
Sbjct: 121 LFAMVMGSLWLLSVIGEL 138

[Close]

BLAST of Chy10G183670 vs. NCBI nr
Match: XP_022968135.1 (reticulon-like protein B14 [Cucurbita maxima])

HSP 1 Score: 185 bits (469), Expect = 2.16e-55
Identity = 91/139 (65.47%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 1   MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHL 60
           MS+   R RF++SI G+GKVAELMLWK KR+SAAM+AG+SGVW ++EVLDYH +TL+C+L
Sbjct: 1   MSDSGVRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWFLLEVLDYHFVTLLCYL 60

Query: 61  LIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFK 120
           LII MLLLF W KLA   + W+PP+  D EIS++T TH F TFNWFLH FFQIS   +FK
Sbjct: 61  LIITMLLLFSWNKLALL-INWAPPSVHDFEISNATLTHFFDTFNWFLHHFFQISTAQNFK 120

Query: 121 LFAMVMAGLWLLSVIGELM 139
           LFAMVM  +WL+S+IGELM
Sbjct: 121 LFAMVMGSIWLVSLIGELM 138

[Close]

BLAST of Chy10G183670 vs. NCBI nr
Match: XP_022945840.1 (reticulon-like protein B14 isoform X3 [Cucurbita moschata])

HSP 1 Score: 185 bits (470), Expect = 1.00e-54
Identity = 92/138 (66.67%), Postives = 111/138 (80.43%), Query Frame = 0


Query: 1   MSNPHGRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHL 60
           MSN   R RF++SI G+GKVAELMLWK KR+SAAM+AG+SGVWL++EVLDYH +TL+C+L
Sbjct: 63  MSNSGDRPRFLHSIFGHGKVAELMLWKKKRESAAMLAGISGVWLLLEVLDYHFVTLLCYL 122

Query: 61  LIILMLLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFK 120
           LII MLLLF W KLA   V W+PPN  D EIS++TFT  F T NW +H FFQIS G +FK
Sbjct: 123 LIITMLLLFSWNKLALL-VNWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQISTGQNFK 182

Query: 121 LFAMVMAGLWLLSVIGEL 138
           LFAMVM  +WL+S+IGEL
Sbjct: 183 LFAMVMGSIWLVSLIGEL 199

[Close]

BLAST of Chy10G183670 vs. NCBI nr
Match: XP_022150651.1 (reticulon-like protein B14 [Momordica charantia])

HSP 1 Score: 171 bits (434), Expect = 5.43e-50
Identity = 83/132 (62.88%), Postives = 104/132 (78.79%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           R RF++SI G+GKVA++MLWKNK  SAA + G+S VWL+ E L+Y  +TL+CHLLIILML
Sbjct: 17  RHRFMHSILGHGKVADMMLWKNKTASAATLVGLSAVWLVFEGLEYPFVTLLCHLLIILML 76

Query: 67  LLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMVM 126
           LL +W KLA     W+PPN  D +IS+STF HLF +FNW L +FF++S G+DFKLFAMVM
Sbjct: 77  LLLVWNKLALLA-NWAPPNVHDFQISESTFRHLFDSFNWLLFNFFEVSSGHDFKLFAMVM 136

Query: 127 AGLWLLSVIGEL 138
            GLWL+S IGEL
Sbjct: 137 GGLWLISAIGEL 147

[Close]

BLAST of Chy10G183670 vs. NCBI nr
Match: KAG6573940.1 (Reticulon-like protein B14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 8.92e-45
Identity = 77/119 (64.71%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 20  VAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILMLLLFLWKKLAFFTV 79
           +AELMLWK KR+SA M+AG+SGVWL++EVLDYH +TL+C+LLII MLLLF W KLA   +
Sbjct: 109 MAELMLWKKKRESAVMLAGISGVWLLLEVLDYHFVTLLCYLLIITMLLLFSWNKLALL-I 168

Query: 80  PWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMVMAGLWLLSVIGEL 138
            W+PPN  D EIS++TFT  F T NW +H FFQ+S G +FKLFAMVM  +WL+S+IGEL
Sbjct: 169 NWAPPNVHDFEISNATFTRFFDTVNWLVHHFFQVSTGQNFKLFAMVMGSIWLVSLIGEL 226

[Close]

BLAST of Chy10G183670 vs. TAIR 10
Match: AT1G68230.2 (Reticulon family protein )

HSP 1 Score: 101.3 bits (251), Expect = 9.8e-22
Identity = 47/131 (35.88%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           RRR +Y   G G+ A++M WKNK++S  ++   + +W + EV++Y  IT +C +L++ + 
Sbjct: 18  RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIF 77

Query: 67  LLFLWKKLAFFTVPWS-PPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMV 126
           +  +W  +    +  S PP+  DL IS+S +  LF   NWF+   + IS G DF+L  + 
Sbjct: 78  IFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLA 137

Query: 127 MAGLWLLSVIG 137
           +  LW+LSV+G
Sbjct: 138 VVSLWILSVVG 148

[Close]

BLAST of Chy10G183670 vs. TAIR 10
Match: AT1G68230.1 (Reticulon family protein )

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-20
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           RRR +Y   G G+ A++M WKNK++S  ++   + +W + EV++Y  IT +C +L++ + 
Sbjct: 18  RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIF 77

Query: 67  LLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQTFNWFLHSFFQISKGNDFKLFAMVM 126
           +  + K          PP+  DL IS+S +  LF   NWF+   + IS G DF+L  + +
Sbjct: 78  IFLICK----------PPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAV 137

Query: 127 AGLWLLSVIG 137
             LW+LSV+G
Sbjct: 138 VSLWILSVVG 137

[Close]

BLAST of Chy10G183670 vs. TAIR 10
Match: AT4G23630.1 (VIRB2-interacting protein 1 )

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-20
Identity = 47/135 (34.81%), Postives = 81/135 (60.00%), Query Frame = 0


Query: 6   GRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILM 65
           GR + V+ + G GK A++ +WKNK+ S  ++ G +  W++ E+++YHL+TL+CH++I+++
Sbjct: 75  GREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVL 134

Query: 66  LLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQ----TFNWFLHSFFQISKGNDFKL 125
            +LFLW     F +  SPP   ++ I +     L        N    S  +I+ G D K 
Sbjct: 135 AVLFLWSNATMF-INKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKK 194

Query: 126 FAMVMAGLWLLSVIG 137
           F + +AGLW+LS++G
Sbjct: 195 FLIAIAGLWVLSILG 208

[Close]

BLAST of Chy10G183670 vs. TAIR 10
Match: AT4G11220.1 (VIRB2-interacting protein 2 )

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-19
Identity = 47/135 (34.81%), Postives = 79/135 (58.52%), Query Frame = 0


Query: 6   GRRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILM 65
           GR R V+ + G GK A++ +WK+K+ S  +  G +  W++ E+++YHL+TL+CH++I+ +
Sbjct: 71  GRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVAL 130

Query: 66  LLLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQ----TFNWFLHSFFQISKGNDFKL 125
            +LFLW     F +  SPP   ++ I +     L        N  + S  +I+ G D K 
Sbjct: 131 AVLFLWSNATMF-IHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKK 190

Query: 126 FAMVMAGLWLLSVIG 137
           F   +AGLW+LS++G
Sbjct: 191 FLSAIAGLWVLSILG 204

[Close]

BLAST of Chy10G183670 vs. TAIR 10
Match: AT3G18260.1 (Reticulon family protein )

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-17
Identity = 46/134 (34.33%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 7   RRRFVYSISGNGKVAELMLWKNKRQSAAMVAGMSGVWLMVEVLDYHLITLICHLLIILML 66
           R+R ++SI G GKVA+++LW+  + +A +V G+S +W ++EV++Y+ ITLICH  +  ML
Sbjct: 26  RQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSML 85

Query: 67  LLFLWKKLAFFTVPWSPPNAQDLEISDSTFTHLFQT----FNWFLHSFFQISKGNDFKLF 126
             F+W   + F + W  P   ++ + +S+F  L ++    FN  L     ++ G D  LF
Sbjct: 86  FFFIWSTASDF-LNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLF 145

Query: 127 AMVMAGLWLLSVIG 137
            +    L+++S+IG
Sbjct: 146 FLTTISLYIVSIIG 158

The following BLAST results are available for this feature:

BLAST of Chy10G183670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVT6	1.4e-20	35.88	Reticulon-like protein B14 OS=Arabidopsis thaliana OX=3702 GN=RTNLB14 PE=2 SV=2	[more]
Q9SUR3	4.4e-19	34.81	Reticulon-like protein B1 OS=Arabidopsis thaliana OX=3702 GN=RTNLB1 PE=1 SV=1	[more]
Q9SUT9	2.9e-18	34.81	Reticulon-like protein B2 OS=Arabidopsis thaliana OX=3702 GN=RTNLB2 PE=1 SV=1	[more]
Q9LJQ5	1.3e-15	34.33	Reticulon-like protein B9 OS=Arabidopsis thaliana OX=3702 GN=RTNLB9 PE=2 SV=1	[more]
Q9FFS0	6.6e-15	33.33	Reticulon-like protein B4 OS=Arabidopsis thaliana OX=3702 GN=RTNLB4 PE=1 SV=1	[more]

BLAST of Chy10G183670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CCB1	2.3e-63	89.93	Reticulon-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4...	[more]
A0A6J1HWC4	3.5e-43	65.47	Reticulon-like protein OS=Cucurbita maxima OX=3661 GN=LOC111467461 PE=4 SV=1	[more]
A0A6J1G247	3.5e-43	66.67	Reticulon-like protein OS=Cucurbita moschata OX=3662 GN=LOC111449961 PE=4 SV=1	[more]
A0A6J1DC54	4.0e-39	62.88	Reticulon-like protein OS=Momordica charantia OX=3673 GN=LOC111018734 PE=4 SV=1	[more]
A0A5N6RF69	1.3e-29	49.62	Reticulon-like protein OS=Carpinus fangiana OX=176857 GN=FH972_015839 PE=4 SV=1	[more]

BLAST of Chy10G183670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034583.1	8.73e-82	90.58	reticulon-like protein B14 [Cucumis melo var. makuwa] >TYK09135.1 reticulon-like...	[more]
XP_022968135.1	2.16e-55	65.47	reticulon-like protein B14 [Cucurbita maxima]	[more]
XP_022945840.1	1.00e-54	66.67	reticulon-like protein B14 isoform X3 [Cucurbita moschata]	[more]
XP_022150651.1	5.43e-50	62.88	reticulon-like protein B14 [Momordica charantia]	[more]
KAG6573940.1	8.92e-45	64.71	Reticulon-like protein B14, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Chy10G183670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68230.2	9.8e-22	35.88	Reticulon family protein	[more]
AT1G68230.1	1.8e-20	35.38	Reticulon family protein	[more]
AT4G23630.1	3.1e-20	34.81	VIRB2-interacting protein 1	[more]
AT4G11220.1	2.0e-19	34.81	VIRB2-interacting protein 2	[more]
AT3G18260.1	9.5e-17	34.33	Reticulon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003388	Reticulon	PFAM	PF02453	Reticulon	coord: 20..139 e-value: 2.1E-25 score: 89.5
IPR003388	Reticulon	PROSITE	PS50845	RETICULON	coord: 20..136 score: 13.159104
None	No IPR available	PANTHER	PTHR10994:SF157	RETICULON-LIKE PROTEIN B14	coord: 5..139
IPR045064	Reticulon-like protein, plant	PANTHER	PTHR10994	RETICULON	coord: 5..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G183670.1	Chy10G183670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009617	response to bacterium
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane