Chy10G183460 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G183460
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Ribulose bisphosphate carboxylase small subunit
Location	chrH10: 16421596 .. 16422354 (+)
RNA-Seq Expression	Chy10G183460
Synteny	Chy10G183460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCATCCATTCTCTCATCCGCCGCTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCTTCCGCTGGTTTCCCCATCACTCGCAAGAACAACGTCGACATCACCACTTTGGCTAGCAATGGTGGAAAAGTTCAGTGCATGAAGGTATCAAATTTCAATTTATATATTAATTAATTATATGTTTGTTTGATTTAATGATTAATTATTTCTCTTTTTTTTAAAAAAAAAATAAAATTAGGTGTGGCCACCACTTGGATTGAGGAAGTTCGAGACTCTTTCTTACCTGCCTGATATGAGTACCGAACAATTGTCAAAGGAAGTTGAGTACCTTCTCAGGAAAGGATGGGTTCCCTGCCTTGAATTCGATTGCGATGTATGGTTATTTCTATATTTATTTAATTTAATGGGATTGACTAATTAAATTAATTAGTGTTTACGTGATTAATTAGAGTTTTTTTTTTTTTCTTTTAATTTTTGCAGAGCGGATTCGTGTACCGTGAGCACCACAGGTCACCAGGATACTACGATGGACGTTACTGGACCATGTGGAAGCTGCCTATGTTTGGCTGCACCGACTCATCTCAGGTGATTAAGGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATTCATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTAA

mRNA sequence

ATGGCTTCATCCATTCTCTCATCCGCCGCTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCTTCCGCTGGTTTCCCCATCACTCGCAAGAACAACGTCGACATCACCACTTTGGCTAGCAATGGTGGAAAAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAGGAAGTTCGAGACTCTTTCTTACCTGCCTGATATGAGTACCGAACAATTGTCAAAGGAAGTTGAGTACCTTCTCAGGAAAGGATGGGTTCCCTGCCTTGAATTCGATTGCGATGTATGGTCACCAGGATACTACGATGGACGTTACTGGACCATGTGGAAGCTGCCTATGTTTGGCTGCACCGACTCATCTCAGGTGATTAAGGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATTCATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTAA

Coding sequence (CDS)

ATGGCTTCATCCATTCTCTCATCCGCCGCTGTTGCCTCTGTGAACAGTGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCATTCACTGGCCTCAAATCTTCCGCTGGTTTCCCCATCACTCGCAAGAACAACGTCGACATCACCACTTTGGCTAGCAATGGTGGAAAAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAGGAAGTTCGAGACTCTTTCTTACCTGCCTGATATGAGTACCGAACAATTGTCAAAGGAAGTTGAGTACCTTCTCAGGAAAGGATGGGTTCCCTGCCTTGAATTCGATTGCGATGTATGGTCACCAGGATACTACGATGGACGTTACTGGACCATGTGGAAGCTGCCTATGTTTGGCTGCACCGACTCATCTCAGGTGATTAAGGAGATTGAGGAGGCTAAGAAGGAATACCCCGACGCATTCATCAGGGTTATTGGCTTTGACAACGTCCGTCAAGTGCAGTGCATCAGTTTCATCGCCTACAAGCCCCCAAGATTCTACTCTTCTTAA

Protein sequence

MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCMKVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVWSPGYYDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPPRFYSS*

Homology

[Close]

BLAST of Chy10G183460 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.0e-85
Identity = 159/179 (88.83%), Postives = 164/179 (91.62%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASN GKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDC--------DVWSPGY 120
           KVWPPLGLRKFETLSYLPDMS EQLSKE +YLLR GWVPC+EFD         +  SPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 172
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

[Close]

BLAST of Chy10G183460 vs. ExPASy Swiss-Prot
Match: P10798 (Ribulose bisphosphate carboxylase small subunit 3B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 274.2 bits (700), Expect = 1.0e-72
Identity = 131/182 (71.98%), Postives = 155/182 (85.16%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCD---VW-----SPGY 120
           KVWPP+G +KFETLSYLPD+S  +L+KEV+YLLR  W+PC+EF+ +   V+     +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 175
           YDGRYWTMWKLP+FGCTDS+QV+KE+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

[Close]

BLAST of Chy10G183460 vs. ExPASy Swiss-Prot
Match: P24007 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifolia OX=3767 GN=RBCS PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.3e-72
Identity = 133/184 (72.28%), Postives = 157/184 (85.33%), Query Frame = 0


Query: 1   MASSILSSAAVASVNS--ASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQ 60
           MASS++SS  VA+V++   +PAQA MVAPF GLKSS+ FP+TRK+N DIT++ASNGG+VQ
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQ 60

Query: 61  CMKVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SP 120
           CM+VWPPLGL+KFETLSYLP +S+E L+KEV+YLLRK WVPCLEF+ +          SP
Sbjct: 61  CMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYK 175
           GYYDGRYWTMWKLPMFGCTDSSQV+KE+EEAKK YP +FIR+IGFDNVRQVQCISFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYK 180

[Close]

BLAST of Chy10G183460 vs. ExPASy Swiss-Prot
Match: Q02980 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3751 GN=RBCS PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.2e-72
Identity = 135/184 (73.37%), Postives = 159/184 (86.41%), Query Frame = 0


Query: 1   MASSILSSAAVASVNS--ASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQ 60
           MASS++SS  VA+V++   +PAQA MVAPFTGLKSS+  P+TRK+N DIT++ASNGG+VQ
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQ 60

Query: 61  CMKVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCD---VW-----SP 120
           CM+VWPPLGL+KFETLSYLP +STE L+KEV+YLLRK WVPCLEF+ +   V+     SP
Sbjct: 61  CMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSP 120

Query: 121 GYYDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYK 175
           GYYDGRYWTMWKLPMFGCTDSSQV+KE+EEAKK YP +FIR+IGFDNVRQVQCISFIAYK
Sbjct: 121 GYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYK 180

[Close]

BLAST of Chy10G183460 vs. ExPASy Swiss-Prot
Match: P31333 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Gossypium hirsutum OX=3635 GN=RBCS PE=3 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 3.8e-72
Identity = 128/179 (71.51%), Postives = 154/179 (86.03%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS++SSA +A+VN +SPAQA+MVAPFTGLKS++ FP+TRK N DIT+LASNGG+VQCM
Sbjct: 1   MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           +VWPPLG +KFETLSYLPD++  QL+KEV+YLLR  W+PCLEF+ +           P Y
Sbjct: 61  QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 172
           YDGRYWTMWKLPMFGCTDS+QV++E+E  KKEYP+AFIR+IGFDNVRQVQCISFIAYKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 179

[Close]

BLAST of Chy10G183460 vs. ExPASy TrEMBL
Match: A0A5P8U3Q3 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 GN=rbcS PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.2e-89
Identity = 166/185 (89.73%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPPLG++KFETLSYLPDMS EQL+KEV+YLLRKGW+PC+EF C+          SPGY
Sbjct: 61  KVWPPLGVKKFETLSYLPDMSNEQLAKEVDYLLRKGWIPCVEFQCESGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 178
           YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. ExPASy TrEMBL
Match: A0A0A0KR46 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=rbcS PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.3e-88
Identity = 167/185 (90.27%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDC--------DVWSPGY 120
           KVWPPLGLRKFETLSYLPDMS EQLSKE +YLLR GWVPC+EFD         +  SPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 178
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. ExPASy TrEMBL
Match: A0A5P8U3Q4 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 GN=rbcS PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.3e-88
Identity = 167/185 (90.27%), Postives = 171/185 (92.43%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDC--------DVWSPGY 120
           KVWPPLGLRKFETLSYLPDMS EQLSKE +YLLR GWVPC+EFD         +  SPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 178
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. ExPASy TrEMBL
Match: A0A5P8U3Q8 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis hystrix OX=396994 GN=rbcS PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 3.0e-88
Identity = 165/185 (89.19%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPP G++KFETLSYLPDM+TEQL KEVEYL+R GW+PCLEF  D          SPGY
Sbjct: 61  KVWPPRGVKKFETLSYLPDMNTEQLGKEVEYLIRNGWIPCLEFQIDSGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 178
           YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. ExPASy TrEMBL
Match: H8WR56 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=ruBisCO PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 6.7e-88
Identity = 166/185 (89.73%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDC--------DVWSPGY 120
           KVWPPLGLRKFETLSYLPDMS EQLSKE +YLLR GWVPC+EFD         +  SPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 178
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. NCBI nr
Match: QFS21935.1 (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis x hytivus])

HSP 1 Score: 335 bits (860), Expect = 1.28e-115
Identity = 166/185 (89.73%), Postives = 173/185 (93.51%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPPLG++KFETLSYLPDMS EQL+KEV+YLLRKGW+PC+EF C+          SPGY
Sbjct: 61  KVWPPLGVKKFETLSYLPDMSNEQLAKEVDYLLRKGWIPCVEFQCESGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 177
           YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. NCBI nr
Match: XP_004135094.1 (ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus] >KGN52085.1 hypothetical protein Csa_009195 [Cucumis sativus] >QFS21936.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis x hytivus] >QFS21937.1 chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis sativus])

HSP 1 Score: 331 bits (849), Expect = 6.08e-114
Identity = 167/185 (90.27%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPPLGLRKFETLSYLPDMS EQLSKE +YLLR GWVPC+EFD            SPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 177
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. NCBI nr
Match: QFS21934.1 (chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucumis hystrix])

HSP 1 Score: 331 bits (848), Expect = 8.64e-114
Identity = 165/185 (89.19%), Postives = 170/185 (91.89%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPP G++KFETLSYLPDM+TEQL KEVEYL+R GW+PCLEF  D          SPGY
Sbjct: 61  KVWPPRGVKKFETLSYLPDMNTEQLGKEVEYLIRNGWIPCLEFQIDSGFVYREHHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 177
           YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. NCBI nr
Match: CCF55356.1 (ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus])

HSP 1 Score: 330 bits (845), Expect = 2.48e-113
Identity = 166/185 (89.73%), Postives = 169/185 (91.35%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSA VASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM
Sbjct: 1   MASSILSSAVVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPPLGLRKFETLSYLPDMS EQLSKE +YLLR GWVPC+EFD            SPGY
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 177
           YDGRYWTMWKLPMFGCTDSSQVI+EIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. NCBI nr
Match: WP_082918361.1 (ribulose-1,5-bisphosphate carboxylase small subunit [Pseudoalteromonas sp. MQS005] >XP_008446602.1 PREDICTED: ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis melo] >KAA0034557.1 ribulose bisphosphate carboxylase small chain [Cucumis melo var. makuwa] >TYK09110.1 ribulose bisphosphate carboxylase small chain [Cucumis melo var. makuwa])

HSP 1 Score: 318 bits (815), Expect = 9.27e-109
Identity = 158/185 (85.41%), Postives = 168/185 (90.81%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASSILSSAAVASVNSASPAQASMVAPFTGLKS+A FP+TRKNN DITTLASNGG+VQCM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNN-DITTLASNGGRVQCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW--------SPGY 120
           KVWPPLGL+KFETLSYLPDMS EQL KEV+YLLRKGW+PC+EFD            SPGY
Sbjct: 61  KVWPPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 177
           YDGRYWTMWKLPMFGCTDSSQV+ EIEEAKKEYPDA+IRVIGFDNVRQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 180

[Close]

BLAST of Chy10G183460 vs. TAIR 10
Match: AT5G38410.2 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-74
Identity = 130/175 (74.29%), Postives = 153/175 (87.43%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW-SPGYYDGRYWT 120
           KVWPP+G +KFETLSYLPD+S  +L+KEV+YLLR  W+PC+EF+ +   +PGYYDGRYWT
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGNTPGYYDGRYWT 120

Query: 121 MWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPPRF 175
           MWKLP+FGCTDS+QV+KE+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP F
Sbjct: 121 MWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 171

[Close]

BLAST of Chy10G183460 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 274.6 bits (701), Expect = 5.5e-74
Identity = 131/187 (70.05%), Postives = 154/187 (82.35%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCDVW------------ 120
           KVWPP+G +KFETLSYLPD+S  +L+KEV+YLLR  W+PC+EF+ +V             
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 120

Query: 121 -SPGYYDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFI 175
            +PGYYDGRYWTMWKLP+FGCTDS+QV+KE+EE KKEYP AFIR+IGFDN RQVQCISFI
Sbjct: 121 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 180

[Close]

BLAST of Chy10G183460 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 274.2 bits (700), Expect = 7.2e-74
Identity = 131/182 (71.98%), Postives = 155/182 (85.16%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ASNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCD---VW-----SPGY 120
           KVWPP+G +KFETLSYLPD+S  +L+KEV+YLLR  W+PC+EF+ +   V+     +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 175
           YDGRYWTMWKLP+FGCTDS+QV+KE+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

[Close]

BLAST of Chy10G183460 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-72
Identity = 129/182 (70.88%), Postives = 154/182 (84.62%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+LSSAAV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ SNGG+V CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCD---VW-----SPGY 120
           KVWPP+G +KFETLSYLPD++  +L+KEV+YLLR  W+PC+EF+ +   V+     +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 175
           YDGRYWTMWKLP+FGCTDS+QV+KE+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

[Close]

BLAST of Chy10G183460 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 268.5 bits (685), Expect = 3.9e-72
Identity = 128/182 (70.33%), Postives = 152/182 (83.52%), Query Frame = 0


Query: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNGGKVQCM 60
           MASS+ SS AV +    SPAQA+MVAPFTGLKSSA FP+TRK N DIT++ SNGG+V CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLRKFETLSYLPDMSTEQLSKEVEYLLRKGWVPCLEFDCD---VW-----SPGY 120
           KVWPP+G +KFETLSYLPD+S  +L+KEV+YLLR  W+PC+EF+ +   V+     +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDSSQVIKEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKPP 175
           YDGRYWTMWKLP+FGCTDS+QV+KE+EE KKEYP AFIR+IGFDN RQVQCISFIAYKPP
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

The following BLAST results are available for this feature:

BLAST of Chy10G183460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08474	1.0e-85	88.83	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu...	[more]
P10798	1.0e-72	71.98	Ribulose bisphosphate carboxylase small subunit 3B, chloroplastic OS=Arabidopsis...	[more]
P24007	1.3e-72	72.28	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifoli...	[more]
Q02980	2.2e-72	73.37	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3...	[more]
P31333	3.8e-72	71.51	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Gossypium hirs...	[more]

BLAST of Chy10G183460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5P8U3Q3	1.2e-89	89.73	Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 G...	[more]
A0A0A0KR46	2.3e-88	90.27	Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=rb...	[more]
A0A5P8U3Q4	2.3e-88	90.27	Ribulose bisphosphate carboxylase small subunit OS=Cucumis x hytivus OX=442738 G...	[more]
A0A5P8U3Q8	3.0e-88	89.19	Ribulose bisphosphate carboxylase small subunit OS=Cucumis hystrix OX=396994 GN=...	[more]
H8WR56	6.7e-88	89.73	Ribulose bisphosphate carboxylase small subunit OS=Cucumis sativus OX=3659 GN=ru...	[more]

BLAST of Chy10G183460 vs. NCBI nr


Match Name	E-value	Identity	Description
QFS21935.1	1.28e-115	89.73	chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucum...	[more]
XP_004135094.1	6.08e-114	90.27	ribulose bisphosphate carboxylase small chain, chloroplastic [Cucumis sativus] >...	[more]
QFS21934.1	8.64e-114	89.19	chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Cucum...	[more]
CCF55356.1	2.48e-113	89.73	ribulose-1,5-bisphosphate carboxylase small subunit [Cucumis sativus]	[more]
WP_082918361.1	9.27e-109	85.41	ribulose-1,5-bisphosphate carboxylase small subunit [Pseudoalteromonas sp. MQS00...	[more]

BLAST of Chy10G183460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38410.2	1.1e-74	74.29	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38410.3	5.5e-74	70.05	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38410.1	7.2e-74	71.98	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38430.1	1.0e-72	70.88	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38420.1	3.9e-72	70.33	Ribulose bisphosphate carboxylase (small chain) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024681	Ribulose bisphosphate carboxylase, small subunit	PRINTS	PR00152	RUBISCOSMALL	coord: 111..140 score: 84.23 coord: 145..171 score: 85.34 coord: 21..38 score: 76.11
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	SMART	SM00961	RuBisCO_small_2_a	coord: 70..171 e-value: 8.7E-39 score: 144.8
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	PFAM	PF00101	RuBisCO_small	coord: 71..171 e-value: 2.0E-39 score: 133.5
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	CDD	cd03527	RuBisCO_small	coord: 69..171 e-value: 1.89111E-62 score: 186.308
IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	PFAM	PF12338	RbcS	coord: 2..46 e-value: 4.5E-23 score: 81.2
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	GENE3D	3.30.190.10	Ribulose bisphosphate carboxylase, small subunit	coord: 60..176 e-value: 2.0E-55 score: 188.1
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	SUPERFAMILY	55239	RuBisCO, small subunit	coord: 60..172
None	No IPR available	PANTHER	PTHR31262	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC	coord: 1..175
None	No IPR available	PANTHER	PTHR31262:SF18	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN	coord: 1..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G183460.1	Chy10G183460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0019253	reductive pentose-phosphate cycle
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0016829	lyase activity