Chy10G181800 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G181800
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	binding partner of ACD11 1
Location	chrH10: 15341173 .. 15343779 (-)
RNA-Seq Expression	Chy10G181800
Synteny	Chy10G181800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCCGGCGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTATAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTGGTTGAGATTGTTAGGTATTCGTTTTACTCAGTATCGAGCATTTCATTTCATGTGTTTGAGTCCTTAATCGATCTTTCTATATGTGATTAGTTTTGAGTTTGAAGAATTTATGGTTTCATGAAAACAGATCTGGTGAAGATGCCTGCACTGCTTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGTGAGTATTCCAGTTCCAAATAAGCTTCAGCCCTACAAAACAGTATTTGATTCAATTCTTCAATTGAGTTTATCAGGGTGTGCCAGCGCGCGCACTCTGATACTATATAGACATATGATCTTCATATATTTATATTTATATATTATATACATTATATGATTTATGGTATAATTTCTCTGACTTTTTATTTTTTTTATATGAACACGAGAATCTTACGGATGTTCAAATTTAAAAGACATATCTTTCAAATGATTTTTTTTTTCTGAAGAAAATAATTTATGGATTTAATGCATTGCATCGATAGAATAGTGAAAGCCGCATTCTTGATTATTGGGTTGTCAGCCACAGCCCACATATTTAATTTATAATGTCGAGTTAAATCGCTCTGGAAATACGGTAGTGCCTTAGTTGGCATTATTATGGGGTTAACTTGTGTTGATGTGGCTCATTTGGCAATTTTAGTTGTAAAAAGAATGACACGGTGACATTTGTTTTTCTCGATTTAAAATGCTTTTGAATTTGCTCTCGCTTCATTGGAGGAAGGATTCTTCATTTGCTTTTGGTGAAGGATCTCTCTATCTTTTTCCTCAATGAAGCAACCGATTGCCTTTGTAGAGGATTGAGCCCCGCTTTTACTGGATTCCTATTAATTGTAAAGGATGGTTCGTTTCCTCCAGTAAGGTCCTTTGTTAGAGAAGAAAACCTGAGTGTGGTTAAACCTTCGCTAAATAATAGCAAAAAACAACAATAACTATCAGTATCGAAATAATGGAAGGGAGAGAGAGATCCAGAAATTGGCTTTCAAATAATGAAAATTGCTTCATGAGCATTTAAGAATAAAAGTATAGTTTTGGCATCATCAAATCTGGAGAAGAAGCCATGATAGGAATATGCCATTGGAATGTTCTAAGCAGCACAAACGCGGATGTAACTATGCATTCTGTTGAAAAAAATGGACCCGTTTATCATTGTAGAGACATGGGGTATAAATGTTTTAGGCTTATGACAAATCTGGATCTTCTTATACAAATAATAATAATAATAATAAAAGAAGATAGGTCTGAACCATAGACATGTGGCAGTTCTGAATCTGTGATTAGAGAGAAAATAACGTTGTTGTTTTTGTTACTGCTGCTGCCGAGTCTCTGATTATGGATAATGACATTGTTGTTGTTGTTGTTGAATACGTGTTAATTAGAGAGCCAAACACATCGTTTTTATTGTTGTTGAGTACACTGTGATTAGAGAAAATAACGTTGCTGTTAATAGTTATCGTTGAATAATCTGCTAGACACATTTTTCTCTCCTTATTCTCCTTGACTGCAAATTTTCGTTGTTTTAGATAGCCACATCAGATTAACATCCTCTTGGATTCAAATGATTAAGGAATTTCTATACGGATACTAAATTTCAGTTTGTAAGCATCAAGTGTTCTGGTTTGATTATCCTGTCTATGCCTTTTGGTTTACCATTTGGTTTTCAATCAACTTTCTTTTCTGGTCATGTGCTTAATGATGGTGGAAATACCTTTATTTACCTGATCGGATTTCATCAGACCATTATTTTTTCTGTAAGGAGATGGTCGTTACGTTTGATCCTGTTTTTTCCTCCTGATAATAATGATCATGCTTTTAGCGTTCAATATCTGATTCTTGCAGGGTGCAAAAATTGTAGATCAAAGAGTTTGTATAACTCGGTGGGGACATTTTGATGATGAATGTGGTTTTTGGAGTAGGCCTCCTGGTCACCAGGAAGAAGACAGTACTCCTGCTGTAAGTGTCAAAAATTAGATTTATTAATATTTCCTACCTGTTGCAAATGTTTTCTTCCTATAGACAATCTTTTATTAATTGATGAGTTCTCCATATTGTAGTCGGCACAAAGAAGTCAGTTCATTTCCAGTGCTGGTAACGCAGTAACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGACACATTGACAAAAGCTAAAGCCTTTGATGAATCTCATCAGGTTTCAGCAACAGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTTACTGACATGTTAGGTGCGGGTTATGAAGCAGTTAAATCCGTGGATGAGAAGTACCACGTATTGGAGACCACCAAATCAGCTATATCAGCTACAGGAAGAACAGCTGCCGCCGCTGCCGATACTGTGGTCAGGAGTAGCTACTTCTCTAGGGGTGCTCTTTTCATGTCTGATGCCCTGAATCGAGCGGCCAAAGCTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAG

mRNA sequence

ATGAATCCCGGCGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTATAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTGGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCTTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAAAAATTGTAGATCAAAGAGTTTGTATAACTCGGTGGGGACATTTTGATGATGAATGTGGTTTTTGGAGTAGGCCTCCTGGTCACCAGGAAGAAGACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTCATTTCCAGTGCTGGTAACGCAGTAACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGACACATTGACAAAAGCTAAAGCCTTTGATGAATCTCATCAGGTTTCAGCAACAGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTTACTGACATGTTAGGTGCGGGTTATGAAGCAGTTAAATCCGTGGATGAGAAGTACCACGTATTGGAGACCACCAAATCAGCTATATCAGCTACAGGAAGAACAGCTGCCGCCGCTGCCGATACTGTGGTCAGGAGTAGCTACTTCTCTAGGGGTGCTCTTTTCATGTCTGATGCCCTGAATCGAGCGGCCAAAGCTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAG

Coding sequence (CDS)

ATGAATCCCGGCGGTTATACGGTTGAAGTGACGGGCTTGTCTCCTATAGCAACAGAGAAAGATGTCCTCGATTTCTTCGCTTTCTCTGGCGCAATCGAGCTGGTTGAGATTGTTAGATCTGGTGAAGATGCCTGCACTGCTTATGTAACATTCAAAGATGCTTATTCTCAAGAGACTGCTTGCTTGCTGAGTGGTGCAAAAATTGTAGATCAAAGAGTTTGTATAACTCGGTGGGGACATTTTGATGATGAATGTGGTTTTTGGAGTAGGCCTCCTGGTCACCAGGAAGAAGACAGTACTCCTGCTTCGGCACAAAGAAGTCAGTTCATTTCCAGTGCTGGTAACGCAGTAACCATGGCCCAGGAAGTAGTCAAAACCATGCTGGCCATGGGTTACGTGCTGGGTAAAGACACATTGACAAAAGCTAAAGCCTTTGATGAATCTCATCAGGTTTCAGCAACAGCAGCAGCTAAGGTAGCAGATTTGAGTCATAGAATTGGCCTTACTGACATGTTAGGTGCGGGTTATGAAGCAGTTAAATCCGTGGATGAGAAGTACCACGTATTGGAGACCACCAAATCAGCTATATCAGCTACAGGAAGAACAGCTGCCGCCGCTGCCGATACTGTGGTCAGGAGTAGCTACTTCTCTAGGGGTGCTCTTTTCATGTCTGATGCCCTGAATCGAGCGGCCAAAGCTGCAGCTGACTTGGGTAGTCGTGGTCTTGAACATTAG

Protein sequence

MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMAQEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVKSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGLEH*

Homology

[Close]

BLAST of Chy10G181800 vs. ExPASy Swiss-Prot
Match: Q9LFD5 (Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 96/241 (39.83%), Postives = 138/241 (57.26%), Query Frame = 0


Query: 7   TVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I +S E   +AYVTFK+    ETA LLSGA
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEH--SAYVTFKETQGAETAVLLSGA 66

Query: 67  KIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMAQEVVKT 126
            I DQ V I    ++                 S PA+       S A + V  A++VV +
Sbjct: 67  SIADQSVIIELAPNY-----------------SPPAAPHAETQSSGAESVVQKAEDVVSS 126

Query: 127 MLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAG----YEAVKSV 186
           MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  L AG     E +K+V
Sbjct: 127 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 186

Query: 187 DEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGL 244
           D+ + V E TKS  +A  +T ++A   V+++ Y   G  + + A NR A+AA ++G +  
Sbjct: 187 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 227

[Close]

BLAST of Chy10G181800 vs. ExPASy Swiss-Prot
Match: P87216 (Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vip1 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.1e-08
Identity = 54/189 (28.57%), Postives = 80/189 (42.33%), Query Frame = 0


Query: 8   VEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGAK 67
           V VT +SP  TEK + DFF+F G +  +   +SGE   TA + F+   + +TA LL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGETQ-TAKIQFERPSATKTALLLQDAL 64

Query: 68  IVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMAQE----- 127
           +   ++ IT                    ED   AS         AG      QE     
Sbjct: 65  LGQNKIQIT-------------------SEDGGAASTTDQ---GGAGGDQAARQEDKPRS 124

Query: 128 -VVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVKS 187
            ++  +L+ GY L   TL K+   D+S+ VS+                 +L +    V+S
Sbjct: 125 AIISELLSRGYHLSDVTLEKSIQLDQSYGVSSK-------------FKGILESALSGVRS 157

Query: 188 VDEKYHVLE 191
           V+E+YHV E
Sbjct: 185 VNERYHVTE 157

[Close]

BLAST of Chy10G181800 vs. ExPASy TrEMBL
Match: A0A0A0KSM6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604930 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 4.9e-129
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP+ATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPVATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGAKIVDQRVCITRWGHFDDE GFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 245
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. ExPASy TrEMBL
Match: A0A5D3CVI0 (Binding partner of ACD11 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G00120 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 5.9e-127
Identity = 239/244 (97.95%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSG+DACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGDDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGAKIVDQRVCITRWGHFDDE GFWSRPPGHQEEDST ASAQRSQFISSAGNAVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           QEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAG+EAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGFEAVK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 245
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. ExPASy TrEMBL
Match: A0A1S3BET5 (binding partner of ACD11 1 OS=Cucumis melo OX=3656 GN=LOC103489100 PE=4 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 5.9e-127
Identity = 239/244 (97.95%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSG+DACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGDDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGAKIVDQRVCITRWGHFDDE GFWSRPPGHQEEDST ASAQRSQFISSAGNAVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           QEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAG+EAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGFEAVK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 245
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. ExPASy TrEMBL
Match: A0A6J1G2B1 (binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450009 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 1.5e-117
Identity = 220/244 (90.16%), Postives = 233/244 (95.49%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGA IVDQRVCITRWGHFD+E  FWSRP G+ EED TP SAQRSQF+S+AG AV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIGLTDM+GAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 245
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. ExPASy TrEMBL
Match: A0A6J1HUH9 (binding partner of ACD11 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467575 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.5e-117
Identity = 219/244 (89.75%), Postives = 232/244 (95.08%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGA IVDQRVCITRWGHFD+E  FWSRP G+ EED TPASAQRSQF S+ G AV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPASAQRSQFASTTGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIGLTDM+GAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALF+SDALNRAAKAAADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFISDALNRAAKAAADLGSR 240

Query: 241 GLEH 245
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. NCBI nr
Match: XP_004135186.1 (binding partner of ACD11 1 [Cucumis sativus] >KGN51899.1 hypothetical protein Csa_008734 [Cucumis sativus])

HSP 1 Score: 469 bits (1208), Expect = 1.42e-166
Identity = 242/244 (99.18%), Postives = 243/244 (99.59%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP+ATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPVATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGAKIVDQRVCITRWGHFDDE GFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 244
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. NCBI nr
Match: XP_008446330.1 (PREDICTED: binding partner of ACD11 1 [Cucumis melo] >KAA0034401.1 binding partner of ACD11 1 [Cucumis melo var. makuwa] >TYK15522.1 binding partner of ACD11 1 [Cucumis melo var. makuwa])

HSP 1 Score: 462 bits (1190), Expect = 7.87e-164
Identity = 239/244 (97.95%), Postives = 241/244 (98.77%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSG+DACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGDDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGAKIVDQRVCITRWGHFDDE GFWSRPPGHQEEDST ASAQRSQFISSAGNAVTMA
Sbjct: 61  CLLSGAKIVDQRVCITRWGHFDDEFGFWSRPPGHQEEDSTSASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           QEVVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAG+EAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGFEAVK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 244
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. NCBI nr
Match: XP_038892042.1 (binding partner of ACD11 1 [Benincasa hispida])

HSP 1 Score: 441 bits (1135), Expect = 1.90e-155
Identity = 225/244 (92.21%), Postives = 236/244 (96.72%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKDVLDFFAFSGAI+LVEI+RSG+DACTAYVTFKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDVLDFFAFSGAIDLVEIIRSGDDACTAYVTFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGAKI+DQRVCITRWG+FDDE GFWSR  GH EEDSTPASAQRSQFISSAGNAVTMA
Sbjct: 61  CLLSGAKIIDQRVCITRWGYFDDEFGFWSRSSGHHEEDSTPASAQRSQFISSAGNAVTMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           QEVVKTMLAMGYVLGKDTLTKAKA DESHQVS TAAAKVADLSHRIGLTDM+GAG+EAVK
Sbjct: 121 QEVVKTMLAMGYVLGKDTLTKAKALDESHQVSTTAAAKVADLSHRIGLTDMIGAGFEAVK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           ++DEKYHVL+TTKSAISATG+TAAAAADTVVRSSYFSRGALFMSDALNRAAK AADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGKTAAAAADTVVRSSYFSRGALFMSDALNRAAKVAADLGSR 240

Query: 241 GLEH 244
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. NCBI nr
Match: XP_023541311.1 (binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 432 bits (1111), Expect = 8.65e-152
Identity = 221/244 (90.57%), Postives = 233/244 (95.49%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGA IVDQRVCITRWGHFD+E  FWSRP G  EED TPASAQRSQF+S+AG AV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGDHEEDGTPASAQRSQFVSTAGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIGLTDM+GAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 244
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. NCBI nr
Match: XP_022945905.1 (binding partner of ACD11 1-like [Cucurbita moschata])

HSP 1 Score: 431 bits (1109), Expect = 1.75e-151
Identity = 220/244 (90.16%), Postives = 233/244 (95.49%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           MNPGGYTVEVTGLSP ATEKD+LDFFAFSGAIELVEIVRSGEDACTAYV+FKDAYSQETA
Sbjct: 1   MNPGGYTVEVTGLSPKATEKDILDFFAFSGAIELVEIVRSGEDACTAYVSFKDAYSQETA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
           CLLSGA IVDQRVCITRWGHFD+E  FWSRP G+ EED TP SAQRSQF+S+AG AV+MA
Sbjct: 61  CLLSGATIVDQRVCITRWGHFDEEFDFWSRPSGYHEEDGTPPSAQRSQFVSTAGTAVSMA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           Q+VVKTMLAMGYVLGKDT TKAKAFDESHQVSATAAAKVADLS+RIGLTDM+GAGYEA K
Sbjct: 121 QDVVKTMLAMGYVLGKDTFTKAKAFDESHQVSATAAAKVADLSNRIGLTDMIGAGYEAAK 180

Query: 181 SVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240
           ++DEKYHVL+TTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR
Sbjct: 181 TMDEKYHVLQTTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSR 240

Query: 241 GLEH 244
           GLEH
Sbjct: 241 GLEH 244

[Close]

BLAST of Chy10G181800 vs. TAIR 10
Match: AT1G14340.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 288.1 bits (736), Expect = 6.6e-78
Identity = 154/238 (64.71%), Postives = 185/238 (77.73%), Query Frame = 0


Query: 5   GYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLS 64
           GY VEVTGLSP  T  D++DFF+FSG I+ ++IVRSGE ACTAYV FKD+YSQETA LL+
Sbjct: 6   GYGVEVTGLSPSVTHNDLIDFFSFSGTIQDIDIVRSGEQACTAYVMFKDSYSQETAVLLT 65

Query: 65  GAKIVDQRVCITRWGHFDDECGFWSRPP-GHQEEDSTPASAQRSQFISSAGNAVTMAQEV 124
           GA I+DQRVCITRWG   +E  FW+    G ++E  +   AQRS+F  +AG AVT AQEV
Sbjct: 66  GATILDQRVCITRWGQHHEEFDFWNATSRGFEDESDSQHYAQRSEF--NAGEAVTKAQEV 125

Query: 125 VKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVKSVD 184
           VK MLA G+VLGKD L+KAKAFDESH VSA A A+V+ L  RIGLTD +  G EAV+  D
Sbjct: 126 VKIMLATGFVLGKDALSKAKAFDESHGVSAAAVARVSQLEQRIGLTDKIFTGLEAVRMTD 185

Query: 185 EKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRG 242
           ++YHV +T KSA+ ATGRTAAAAA +VV SSYFS GAL++S AL RAAKAA+DLG+RG
Sbjct: 186 QRYHVSDTAKSAVFATGRTAAAAATSVVNSSYFSSGALWLSGALERAAKAASDLGTRG 241

[Close]

BLAST of Chy10G181800 vs. TAIR 10
Match: AT3G01210.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-55
Identity = 128/252 (50.79%), Postives = 161/252 (63.89%), Query Frame = 0


Query: 1   MNPGGYTVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETA 60
           M P GY  +VT LSP ATEKDV  FF+  G +ELVEI     DA TAYVTF+DAY+ + A
Sbjct: 1   MYPCGYVAQVTNLSPQATEKDVHRFFSHCGIVELVEITGCQGDALTAYVTFRDAYALDMA 60

Query: 61  CLLSGAKIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMA 120
            LLSGA IVDQ V I+ +G +  E          QEED +    +   F SS G A+T+A
Sbjct: 61  VLLSGATIVDQTVWISVYGVYLHESNNL-----RQEEDYSVTVTRSDAFASSPGEAITVA 120

Query: 121 QEVVKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGYEAVK 180
           Q+VV+TMLA GYVL KD + KAKA DES + S+  A K+A++SH +GLT  + +  E V+
Sbjct: 121 QQVVQTMLAKGYVLSKDAIGKAKALDESQRFSSLVATKLAEISHYLGLTQNIQSSMELVR 180

Query: 181 SVDEKYHVLETTKSAI-----------SATGRTAAAAADTVVRSSYFSRGALFMSDALNR 240
           S DEKYH  + TKSA+           + TG+ AAAAA +VV S YF+ GAL+ SDAL R
Sbjct: 181 SADEKYHFSDFTKSAVLVTGTAAVAAATITGKVAAAAATSVVNSRYFANGALWFSDALGR 240

Query: 241 AAKAAADLGSRG 242
           AAKAAA +G  G
Sbjct: 241 AAKAAAHIGGGG 247

[Close]

BLAST of Chy10G181800 vs. TAIR 10
Match: AT4G17720.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-37
Identity = 99/244 (40.57%), Postives = 142/244 (58.20%), Query Frame = 0


Query: 7   TVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           TV+V+ +S  AT++D+ +FF+FSG I  +E     E    AYVTFKD    ETA LLSGA
Sbjct: 5   TVKVSNVSLGATDRDLKEFFSFSGDILYLETQSETERTKLAYVTFKDLQGAETAVLLSGA 64

Query: 67  KIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISS--AGNAV-TMAQEV 126
            IVD  V +             S  P +Q      AS +      S  AG++V   A++V
Sbjct: 65  TIVDSSVIV-------------SMAPDYQLSPEALASLEPKDSNKSPKAGDSVLRKAEDV 124

Query: 127 VKTMLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAGY----EAV 186
           V +MLA G++LGKD + KAK+ DE HQ+++TA+AKVA    +IG TD +  G     E V
Sbjct: 125 VSSMLAKGFILGKDAIAKAKSVDEKHQLTSTASAKVASFDKKIGFTDKINTGTVVVGEKV 184

Query: 187 KSVDEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGS 244
           + VD+KY V E TKSAI+A  +T + A   ++++ Y   GA +++ A N+ AKAA ++G 
Sbjct: 185 REVDQKYQVSEKTKSAIAAAEQTVSNAGSAIMKNRYVLTGATWVTGAFNKVAKAAEEVGQ 235

[Close]

BLAST of Chy10G181800 vs. TAIR 10
Match: AT5G16840.2 (binding partner of acd11 1 )

HSP 1 Score: 151.0 bits (380), Expect = 1.3e-36
Identity = 96/241 (39.83%), Postives = 137/241 (56.85%), Query Frame = 0


Query: 7   TVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I  S E   +AYVTFK+    ETA LLSGA
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDIQSSNEH--SAYVTFKETQGAETAVLLSGA 66

Query: 67  KIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMAQEVVKT 126
            I DQ V I    ++                 S PA+       S A + V  A++VV +
Sbjct: 67  SIADQSVIIELAPNY-----------------SPPAAPHAETQSSGAESVVQKAEDVVSS 126

Query: 127 MLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAG----YEAVKSV 186
           MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  L AG     E +K+V
Sbjct: 127 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 186

Query: 187 DEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGL 244
           D+ + V E TKS  +A  +T ++A   V+++ Y   G  + + A NR A+AA ++G +  
Sbjct: 187 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 228

[Close]

BLAST of Chy10G181800 vs. TAIR 10
Match: AT5G16840.1 (binding partner of acd11 1 )

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-35
Identity = 96/241 (39.83%), Postives = 138/241 (57.26%), Query Frame = 0


Query: 7   TVEVTGLSPIATEKDVLDFFAFSGAIELVEIVRSGEDACTAYVTFKDAYSQETACLLSGA 66
           +V+V  LS  ATE D+ +FF+FSG +E ++I +S E   +AYVTFK+    ETA LLSGA
Sbjct: 7   SVKVGNLSSGATEHDIKEFFSFSGEVESIDI-QSNEH--SAYVTFKETQGAETAVLLSGA 66

Query: 67  KIVDQRVCITRWGHFDDECGFWSRPPGHQEEDSTPASAQRSQFISSAGNAVTMAQEVVKT 126
            I DQ V I    ++                 S PA+       S A + V  A++VV +
Sbjct: 67  SIADQSVIIELAPNY-----------------SPPAAPHAETQSSGAESVVQKAEDVVSS 126

Query: 127 MLAMGYVLGKDTLTKAKAFDESHQVSATAAAKVADLSHRIGLTDMLGAG----YEAVKSV 186
           MLA G++LGKD + KAKAFDE H  ++TA A VA L  +IGL+  L AG     E +K+V
Sbjct: 127 MLAKGFILGKDAVGKAKAFDEKHGFTSTATAGVASLDQKIGLSQKLTAGTSLVNEKIKAV 186

Query: 187 DEKYHVLETTKSAISATGRTAAAAADTVVRSSYFSRGALFMSDALNRAAKAAADLGSRGL 244
           D+ + V E TKS  +A  +T ++A   V+++ Y   G  + + A NR A+AA ++G +  
Sbjct: 187 DQNFQVTERTKSVYAAAEQTVSSAGSAVMKNRYVLTGVSWAAGAFNRVAQAAGEVGQKTK 227

The following BLAST results are available for this feature:

BLAST of Chy10G181800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFD5	1.5e-34	39.83	Binding partner of ACD11 1 OS=Arabidopsis thaliana OX=3702 GN=BPA1 PE=1 SV=1	[more]
P87216	4.1e-08	28.57	Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN...	[more]

BLAST of Chy10G181800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSM6	4.9e-129	99.18	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G604930 PE=4 SV...	[more]
A0A5D3CVI0	5.9e-127	97.95	Binding partner of ACD11 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3BET5	5.9e-127	97.95	binding partner of ACD11 1 OS=Cucumis melo OX=3656 GN=LOC103489100 PE=4 SV=1	[more]
A0A6J1G2B1	1.5e-117	90.16	binding partner of ACD11 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450009 PE...	[more]
A0A6J1HUH9	9.5e-117	89.75	binding partner of ACD11 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of Chy10G181800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135186.1	1.42e-166	99.18	binding partner of ACD11 1 [Cucumis sativus] >KGN51899.1 hypothetical protein Cs...	[more]
XP_008446330.1	7.87e-164	97.95	PREDICTED: binding partner of ACD11 1 [Cucumis melo] >KAA0034401.1 binding partn...	[more]
XP_038892042.1	1.90e-155	92.21	binding partner of ACD11 1 [Benincasa hispida]	[more]
XP_023541311.1	8.65e-152	90.57	binding partner of ACD11 1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022945905.1	1.75e-151	90.16	binding partner of ACD11 1-like [Cucurbita moschata]	[more]

BLAST of Chy10G181800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14340.1	6.6e-78	64.71	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G01210.1	1.2e-55	50.79	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G17720.1	1.5e-37	40.57	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G16840.2	1.3e-36	39.83	binding partner of acd11 1	[more]
AT5G16840.1	1.1e-35	39.83	binding partner of acd11 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 7..77 e-value: 9.1E-4 score: 28.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..72 e-value: 1.1E-5 score: 25.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..72 score: 8.637593
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..75 e-value: 9.0E-7 score: 30.9
None	No IPR available	PANTHER	PTHR32343:SF26	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..242
None	No IPR available	PANTHER	PTHR32343	SERINE/ARGININE-RICH SPLICING FACTOR	coord: 1..242
IPR034360	Vip1-like, RNA recognition motif, plant	CDD	cd12269	RRM_Vip1_like	coord: 8..76 e-value: 1.40827E-34 score: 116.776
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 5..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G181800.1	Chy10G181800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding