Chy10G180240 (gene) Cucumber (hystrix) v1

Overview


Name	Chy10G180240
Type	gene
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH10: 14243540 .. 14244178 (-)
RNA-Seq Expression	Chy10G180240
Synteny	Chy10G180240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTCAAAAACCCTCTGTCGAGTAACTGGGACCGCCGGAGAAGAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACGTGAGTTCGCAGAGCCGCAGGAGAAGGAGAAACAGTGAGTAAATGCCAATATTTATATGCCGTCTGATGCTCGCCGGGGAAGAAGAGTGAGCAGACGGGGTGGGGTGAGGGTCGTCGGCGGCTGCGAGGGAAAAGTAATGGAATGGTTTCATAAAAATATCGTACTATTATTACTGTTAGGGTAAAATGCATTTTTTTTTCCTCAACGAATCAAAATACTAAAAAATTTCAAAATTTTTACCGTATATTCAAACCATTTAAACTAGATTTTCTCCAAAAATTAATAACTTAATTCAATGGTTATAGTCTAACAACAAGATAATCAAGAGGGTTCTTACCTCAATTTTGCCGTTAAATCTTGTTGGATGAGTCCGAAGTTATCAATGGTGGTTTCGGTGTTGGTGCTGGTCGGAGTCGATGAGTGCGAGGGTATCGTGGGGGTCTATGGAGAGTCGCCGGAGTTGGAAGCTGGGGACTGTAAAGGTGACACGGGGAATGTAAACAATGAAAAGAAAGAGGGAAACTAA

mRNA sequence

ATGTGGGTCAAAAACCCTCTGTCGAGTAACTGGGACCGCCGGAGAAGAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACATAATCAAGAGGGTTCTTACCTCAATTTTGCCGTTAAATCTTGTTGGATGAGTCCGAAGTTATCAATGGTGGTTTCGGTGTTGGTGCTGGTCGGAGTCGATGAGTGCGAGGGTATCGTGGGGGTCTATGGAGAGTCGCCGGAGTTGGAAGCTGGGGACTGTAAAGGTGACACGGGGAATGTAAACAATGAAAAGAAAGAGGGAAACTAA

Coding sequence (CDS)

ATGTGGGTCAAAAACCCTCTGTCGAGTAACTGGGACCGCCGGAGAAGAAGTTCGGCGTCAATCTATGTAGGTGGCTACTCGCGTCGGTTGCCGGAGGAACTTGGTCGTCGACATAATCAAGAGGGTTCTTACCTCAATTTTGCCGTTAAATCTTGTTGGATGAGTCCGAAGTTATCAATGGTGGTTTCGGTGTTGGTGCTGGTCGGAGTCGATGAGTGCGAGGGTATCGTGGGGGTCTATGGAGAGTCGCCGGAGTTGGAAGCTGGGGACTGTAAAGGTGACACGGGGAATGTAAACAATGAAAAGAAAGAGGGAAACTAA

Protein sequence

MWVKNPLSSNWDRRRRSSASIYVGGYSRRLPEELGRRHNQEGSYLNFAVKSCWMSPKLSMVVSVLVLVGVDECEGIVGVYGESPELEAGDCKGDTGNVNNEKKEGN*

Homology

[Close]

BLAST of Chy10G180240 vs. ExPASy TrEMBL
Match: A0A0A0KQ33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593420 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.8e-11
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MWVKNPLSSNWDRRRRSSASIYVGGYSRRLPEELGRR 38
          MWVKNP +SNWDRRR+SSASIYVGGYSRRLPEELGRR
Sbjct: 20 MWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRR 56

[Close]

BLAST of Chy10G180240 vs. ExPASy TrEMBL
Match: A0A5D3CUV7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001700 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-10
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MWVKNPLSSNWDRRRRSSASIYVGGYSRRLPEELGRR 38
          MWVKNPL+SNWD RRRSSASIYVGGYSRRL EELGRR
Sbjct: 20 MWVKNPLASNWDHRRRSSASIYVGGYSRRLSEELGRR 56

[Close]

BLAST of Chy10G180240 vs. NCBI nr
Match: KGN51728.1 (hypothetical protein Csa_008236 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 3.34e-16
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 1  MWVKNPLSSNWDRRRRSSASIYVGGYSRRLPEELGRR 37
          MWVKNP +SNWDRRR+SSASIYVGGYSRRLPEELGRR
Sbjct: 20 MWVKNPTTSNWDRRRKSSASIYVGGYSRRLPEELGRR 56

[Close]

BLAST of Chy10G180240 vs. NCBI nr
Match: KAA0034247.1 (hypothetical protein E6C27_scaffold65G002460 [Cucumis melo var. makuwa] >TYK15673.1 hypothetical protein E5676_scaffold35G001700 [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.23e-15
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 0


Query: 1  MWVKNPLSSNWDRRRRSSASIYVGGYSRRLPEELGRR 37
          MWVKNPL+SNWD RRRSSASIYVGGYSRRL EELGRR
Sbjct: 20 MWVKNPLASNWDHRRRSSASIYVGGYSRRLSEELGRR 56

The following BLAST results are available for this feature:

BLAST of Chy10G180240 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G180240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ33	6.8e-11	91.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G593420 PE=4 SV=1	[more]
A0A5D3CUV7	2.6e-10	91.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy10G180240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN51728.1	3.34e-16	91.89	hypothetical protein Csa_008236 [Cucumis sativus]	[more]
KAA0034247.1	1.23e-15	91.89	hypothetical protein E6C27_scaffold65G002460 [Cucumis melo var. makuwa] >TYK1567...	[more]

BLAST of Chy10G180240 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Chy10G180240.1	Chy10G180240.1	mRNA