Chy10G178770 (gene) Cucumber (hystrix) v1

Overview
NameChy10G178770
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH10: 13252954 .. 13255093 (+)
RNA-Seq ExpressionChy10G178770
SyntenyChy10G178770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCCAAAAGCAATCCCAGGTTGATGTCAAGTCTACAAATTTTCTTTCGGTCTTCAGATATTTGCTTGAAGTTGCCTGTCAATATTTGATTCGAGAAGAATTGTTTGCTGCTGCTGAGAAATATTACATAGTTGAGAGATCTGAAAAAATGGCCAGTTCTTTTGCAACTTCATTTAATTATTAATACCCTACAAGTTAGCCTCAGTAATTTGCGTGGATCAGTCATTAGTGTGTATATATTTTCAGCCAAATAATGACATTTGTTCCTTACCCAAGATTAGATATCTGATACCTCTTATTTGGATAGGGAATGATTAATTTGTATCATAAACAATTTCATCCGTGAATCTGAATGCAATGCTCAATGTGTGTATGGGGTTACATACTTGAAAGTAATTCTGACAGACATAGGGAAGTTTACATTCTATTTAGCAGCCATGGTTGTGTACTAATGAACATGCAGGTCACTGACTGTGAGCCTGAGGATAGGAGATAGAGAAGAGCTGGGGAATCGTCGTGACACTGCTCATGATCTCAAAATTACCATGCCAGAATTCCAAGCTGCTATGTGCGCCACCCTTTCCATTTAGTCAACCCAAAAAAGGTTGTGGGTAAGTTTTTGTGCTGTAAGTGCACGGATGAAATTCAATACTACAGTAGTATAGAAAAGCTTTCATACCACCACAGTTAATTGTCTGTTAGAATTAGTGCATTTAAGAGTACTACTAGGTCCATAAATCATTAAATGACATGTCGAAATATGGATAGAAGAAGTGATACTACTAATTTTCTTTGGTAGTGCAGGGATGGAGTGGCACTGCCATGATGTTAAATTGCCATCCAGGTTGGTTAAGTTGCTGGGAAGAGACAACCCCTCTATCAACCCAACCAGACAAAGGTTTGTTATTACTTTTTAATTTTTTTTTAAATAAATAAAAATTAATTTTTACTATATATATATATATATTTTTTACAATTCAACACAGAGTAGTGATTTGAACCTAGGGTCCATGAGGTATGGGAATGGGACTTCATCCAGCAGCAATAAATTGACCTTTAAGATTGACAGTTGGTGCTGGATAGCCCAGATATGTTTGTGCCATTAGACGATATCTTATCTTGTTCACATTGACTCGGATAGGGAAAAAAACATGAATATGAATCTAGATCATGCTCATGTGCGTGTTCCCTAAACAGAAACCATTCATTGAAATGGTGAAAAATGAGATACAAAAAAGTGTTCCTATCAAGAAATAGTTTAAAAGCAAAGAAAAAAAAAACATCTTCATTGAGTAGCCATGGTGTTTAAGCTATAAATTATCAATTCGATACCTCTTGTGCATATTACTATTGTTAGTTTGCTTGGAGTTACGCCATCTCTGAGAATCTTATTGAGATTGCAATGGAAGCAAAATTGTTGAGTTAGGATTGTCACTTTGAGAACACTTGGCCTTCGAGTGGGCTAAAGGAGTTCTTTTTTTTTTTTTCTTTTTCTTCTTTTTTTAATTTAAATTTTGGTCAAAGTCATTTCGTTTTAGTCCATTTATGTCTGAATTTAGTCTACACTTGCAAGAAATTTTAAATTCAGTCTCCAGACATTGTCGATTTTCTTTTTCTAAATGGTCTGTTGCTTACTTTTGATTATGATATTTGATAATAGTATTTAAGGTCGATGTAGTATTGACATGACCTTCATTTTCAAACATTGAAGGATCAATTCTTTATCGTGCAATGGAACCAATATATTAACATTTCTCTTTTATGATTTCATTATCGAGCAAATACTATAGTTGATTAACAAGAATTCTTCCATTTCCAGCTGGGAAATGAGTTCAATGCATTAGGTTAAGAGCGTCTTTCAGTGACATCTAAATTACATTTCTGCATTTCTCACTTTCCCTTGGTCTTTGAAGTTCAGAATTTAGGGTGTTTGCAGCTACTAATTCCCCTATGGTTACATACCTGGATTAGATTGGCATCAATTTCTTTTATTGGTAAGCTGTGGGCTAAAATGGCAAATTTAGTCCCTTCAATTATATGTTGGTTGTTAGTTTCCAATTTCATGAAATTCATATCATCTTTGTTATCAACAGTTTTACCCAGCAAAGTATGTGGTATCTTTATTCATGAAAAATCAA

mRNA sequence

ATGGCCCAAAAGCAATCCCAGGTTGATGTCAAGTCTACAAATTTTCTTTCGGTCTTCAGATATTTGCTTGAAGTTGCCTGTCAATATTTGATTCGAGAAGAATTAATTCCAAGCTGCTATGTGCGCCACCCTTTCCATTTAGTCAACCCAAAAAAGGTTGTGGGGATGGAGTGGCACTGCCATGATGTTAAATTGCCATCCAGGTTGGTTAAGTTGCTGGGAAGAGACAACCCCTCTATCAACCCAACCAGACAAAGTATATATATATATATATTTTTTACAATTCAACACAGAGTAGTGATTTGAACCTAGGGTCCATGAGTTTCCAATTTCATGAAATTCATATCATCTTTGTTATCAACAGTTTTACCCAGCAAAGTATGTGGTATCTTTATTCATGAAAAATCAA

Coding sequence (CDS)

ATGGCCCAAAAGCAATCCCAGGTTGATGTCAAGTCTACAAATTTTCTTTCGGTCTTCAGATATTTGCTTGAAGTTGCCTGTCAATATTTGATTCGAGAAGAATTAATTCCAAGCTGCTATGTGCGCCACCCTTTCCATTTAGTCAACCCAAAAAAGGTTGTGGGGATGGAGTGGCACTGCCATGATGTTAAATTGCCATCCAGGTTGGTTAAGTTGCTGGGAAGAGACAACCCCTCTATCAACCCAACCAGACAAAGTATATATATATATATATTTTTTACAATTCAACACAGAGTAGTGATTTGAACCTAGGGTCCATGAGTTTCCAATTTCATGAAATTCATATCATCTTTGTTATCAACAGTTTTACCCAGCAAAGTATGTGGTATCTTTATTCATGAAAAATCAA

Protein sequence

MAQKQSQVDVKSTNFLSVFRYLLEVACQYLIREELIPSCYVRHPFHLVNPKKVVGMEWHCHDVKLPSRLVKLLGRDNPSINPTRQSIYIYIFFTIQHRVVI*T*GP*VSNFMKFISSLLSTVLPSKVCGIFIHEKSX
Homology
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BLAST of Chy10G178770 vs. NCBI nr
Match: KGN51584.1 (hypothetical protein Csa_009340 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 2.66e-06
Identity = 22/31 (70.97%), Postives = 23/31 (74.19%), Query Frame = 0 

Query: 56 MEWHCHDVKLPSRLVKLLGRDNPSINPTRQS 86
          MEWHCHDVKLPSRLVK+LGRD P     R  
Sbjct: 1  MEWHCHDVKLPSRLVKVLGRDKPDKGSMRYG 31

The following BLAST results are available for this feature:
BLAST of Chy10G178770 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G178770 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G178770 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51584.12.66e-0670.97hypothetical protein Csa_009340 [Cucumis sativus][more]
BLAST of Chy10G178770 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G178770.1Chy10G178770.1mRNA