Chy10G178290 (gene) Cucumber (hystrix) v1

Overview
NameChy10G178290
Typegene
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH10: 12900214 .. 12902557 (-)
RNA-Seq ExpressionChy10G178290
SyntenyChy10G178290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTTTTAGGGAGAAGAGATATGATGGGGATTGTGTCGGCCCCGTTTTGGGGCCACTCTTTACAGGTCAAGGAGCAAGAAGAGCGAACATGGGGCTGACAGCTTCGTGGTGGCACTCAACGCCTACTGTTCATCTATCGATTTCCACAGGTTTGAAACCCAGGTTCCCAACAATTTGTCAAGTTTGAAAGATTCGATTTGCTTATATTGTTATCTACCATTAAAATAAAATCTGAGTGCAATTATGGCCTTTTCCCTTTCTGTTGCAATTTGTATGTGAGAGCCAATGAAAGTATTACAAATTTCAGGGAAAAGCACCTTTCCCCTCTTTCATTTATGCTGCTACATATGGAAAATTCAAGACTTTAATTCTCTGGCCCTCAAGAAAATTAGTCAATATCTCCATTATGTGGCACCCGTGATTTGGTTTTTCTTTTATCATAAGCCTCAAGGACAAATTGGCATGTCTTCTTCAATCTTAGATTGGCCAAGCATTAGGATCCAATCAGAATTTGCCTTATGGTTTCTTTTACAGCCTTCCTCAATATCTAGAGTTTTCAGTGTGCTGACAACATCTATATCACGAATTCAACTTATTTGACTTCTTGTGTTACAAAAGCGAAGCTCTTTAAGGTTGTTGCAGGTTGTGGGCTTATTGGAATGAAAATGACCTGTTAGTTTTATATGCAAAGGCAATATAAACAAAATCATCTTGAAAACTGCATTTAAGATAGCTTTGTGAGACTTCCTTTTTTCCCCTGCTCTTCAGAGCAAAGTCATCCCCTTTTTGATATTATAAAATTAAGATTGTGATAATTTGGTATGGATATTGCAATCCCTTACTTTTATCTATATATTAAGTTTGTAGTGTGAATTCCAGACTTTACTCCAACATAAAAGAGTCATCCCATTTATGGTGAAAAACCTAATTGATGATTACATGTTTTCTAGAAGGAGACCGACCACCAATAAATTAATCTATTTTGACTCTTTAGCTTTAGTGGACTCTTAATTGTGTTGGAGCTATACCTCTATGCTCCATTCCCACTTTAACACCGACGAATTAAATTACATCATGGGGCATCTCCTGTCCTTCAAATGCCTGCACTTGGGGACTGCAACAATCTCCTTTCATCTGTGTAAAGTTGTTCGATCCAATCACTCCCAACATTGCCATAGCATGAAATCTTATGTGGACCTCATCGGGTTAATTTTTTTTTTCACTTGCTATTATAATTTCGATGGTATTCTTGTTAAATAATCCTCTACCATTTGACTAGAAACCATTGATGTTGAGCCAGTCAGAATTGTATAGTCAGAGAAGGAAATGAAGAATGCTAAGGTAAGGAGTTAAGGAATTATGGCTAGCCTGTCAATTGTATAGTTAGAGAAGGAAATGAGGAATGCTAGGGTAAGAAGTTGAGAAATTATCAGTAGCCGATCGATTGATAAGCATATTGGCTTTAAGGGCAATGGTCACCGCTCTTGTTATAATGTGATTAAAACCGCATAAATGGGATTAGTAGGATTGGTTTGACAAACTTTATGAAATATGAATTCTTATCATGTTCCCTATCTATCCCCACTTTTAATAATATTCCCCTTCAGTCATTGTTTGTTTGTTCTCTTTCTATCCTCTTTATAGCCGGAAATCTAAGGGCTATAAGAATCTTTTCCTAATCATTTTTGCCTAAACCTTCTTTTGATTATAAAATATTCGACAAATCTGGAGAGCAAAAACAAAATCTTTAATGGCAACAAAAGCAATGTAAAATATATCATTATCGTAAAAGCCAAGAAACCACACGTAGCCATTCTGAAAAAATCATATTATGCATAGTTACAAAATGGACTTTATTTCAGTCACTTGCCAAATGTGCAATTAGAGCACTGTTCCTTTTGTTCTAATCATTCCCATTATTTTAGTGAGCCATCCAATCTTTGTCGTTTTGTTCATTATTTTACTGATTAATGATAATTACTTCCCGAAAGTTTGTGAAATATGCATTTTGAGGGGTCACTATTGAGGTGTCGATTGGGAGGCTGGGAAATGAACTGTCTCCCATTACCTGACTAATTTATTTATATATTCCTTTGTTAGTTGCCAAATTATCATTATGTCTTATTCCTAGCTTTAAACATTTGGTAAAAAACCTCTCTCTCCCTCTCTCTCTCTCTCTAAATGTGAACAAATTATTATCTTGTTTTTTTATGGTTTTTTTGTCCAAGTTCACGACCGACTGTTTTTTTTCTGATCTTCAAGATCTCACTTTGCAGGGCATAGCTAGGCTAGCACTCAAGATTGCGATTTTTGGAGTTACCCCACCGCACCCAGGAATGTGA

mRNA sequence

ATGCTTTTTAGGGAGAAGAGATATGATGGGGATTGTGTCGGCCCCGTTTTGGGGCCACTCTTTACAGGTCAAGGAGCAAGAAGAGCGAACATGGGGCTGACAGCTTCGTGGTGGCACTCAACGCCTACTGTTCATCTATCGATTTCCACAGATCTCACTTTGCAGGGCATAGCTAGGCTAGCACTCAAGATTGCGATTTTTGGAGTTACCCCACCGCACCCAGGAATGTGA

Coding sequence (CDS)

ATGCTTTTTAGGGAGAAGAGATATGATGGGGATTGTGTCGGCCCCGTTTTGGGGCCACTCTTTACAGGTCAAGGAGCAAGAAGAGCGAACATGGGGCTGACAGCTTCGTGGTGGCACTCAACGCCTACTGTTCATCTATCGATTTCCACAGATCTCACTTTGCAGGGCATAGCTAGGCTAGCACTCAAGATTGCGATTTTTGGAGTTACCCCACCGCACCCAGGAATGTGA

Protein sequence

MLFREKRYDGDCVGPVLGPLFTGQGARRANMGLTASWWHSTPTVHLSISTDLTLQGIARLALKIAIFGVTPPHPGM*
Homology
[Close]
BLAST of Chy10G178290 vs. NCBI nr
Match: KAG6600110.1 (hypothetical protein SDJN03_05343, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.1 bits (131), Expect = 2.06e-07
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 11  DCVGPVLGPLF-TGQGARRANMGLTASWWHSTPTVHLSIST 50
           D +G V GPL    QG RRANMGLT SWW+STP +HLS ST
Sbjct: 61  DMMGIVSGPLLRVKQGERRANMGLTPSWWNSTPLLHLSTST 101

[Close]
BLAST of Chy10G178290 vs. NCBI nr
Match: KAG7030780.1 (hypothetical protein SDJN02_04817, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.1 bits (131), Expect = 2.67e-07
Identity = 27/41 (65.85%), Postives = 30/41 (73.17%), Query Frame = 0 

Query: 11  DCVGPVLGPLF-TGQGARRANMGLTASWWHSTPTVHLSIST 50
           D +G V GPL    QG RRANMGLT SWW+STP +HLS ST
Sbjct: 73  DMMGIVSGPLLRVKQGERRANMGLTPSWWNSTPLLHLSTST 113

The following BLAST results are available for this feature:
BLAST of Chy10G178290 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G178290 vs.
Match NameE-valueIdentityDescription
BLAST of Chy10G178290 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600110.12.06e-0765.85hypothetical protein SDJN03_05343, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7030780.12.67e-0765.85hypothetical protein SDJN02_04817, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Chy10G178290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Chy10G178290.1Chy10G178290.1mRNA